Wall clock time and date at job start Tue Mar 31 2020 01:07:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81410 * 1 3 3 C 1.76201 * 102.99754 * 2 1 4 4 C 1.38774 * 120.10516 * 0.02562 * 3 2 1 5 5 C 1.38203 * 119.98779 * 179.97438 * 4 3 2 6 6 C 1.50699 * 119.90045 * 180.02562 * 5 4 3 7 7 C 1.38290 * 120.19733 * 0.02562 * 5 4 3 8 8 C 1.38263 * 120.20293 * 359.70189 * 7 5 4 9 9 C 1.38630 * 120.01179 * 0.55097 * 8 7 5 10 10 N 1.40195 * 120.09765 * 179.74343 * 9 8 7 11 11 C 1.34772 * 119.99634 * 34.68196 * 10 9 8 12 12 O 1.21599 * 120.00380 * 355.51514 * 11 10 9 13 13 N 1.34774 * 120.00001 * 175.24529 * 11 10 9 14 14 C 1.46496 * 120.00428 * 180.27372 * 13 11 10 15 15 C 1.50703 * 109.47598 * 180.02562 * 14 13 11 16 16 H 1.08004 * 119.99421 * 359.97438 * 15 14 13 17 17 C 1.37872 * 120.00204 * 180.02562 * 15 14 13 18 18 N 1.31517 * 120.00219 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99988 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47170 * 359.97438 * 19 17 15 21 21 H 1.48504 * 109.47475 * 119.99357 * 19 17 15 22 22 H 1.48503 * 109.47436 * 239.99749 * 19 17 15 23 23 H 1.08994 * 109.46973 * 300.00266 * 1 2 3 24 24 H 1.08997 * 109.46638 * 60.00158 * 1 2 3 25 25 H 1.09000 * 109.46709 * 179.97438 * 1 2 3 26 26 H 1.08001 * 120.00291 * 359.96002 * 4 3 2 27 27 H 1.09003 * 109.47024 * 90.00103 * 6 5 4 28 28 H 1.09001 * 109.47156 * 209.99675 * 6 5 4 29 29 H 1.09000 * 109.47468 * 330.00381 * 6 5 4 30 30 H 1.08000 * 119.89723 * 179.97438 * 7 5 4 31 31 H 1.08002 * 119.99423 * 180.29569 * 8 7 5 32 32 H 0.96999 * 119.99736 * 214.67358 * 10 9 8 33 33 H 0.97003 * 120.00157 * 0.27546 * 13 11 10 34 34 H 1.09001 * 109.47057 * 299.99915 * 14 13 11 35 35 H 1.09004 * 109.47303 * 59.99792 * 14 13 11 36 36 H 0.97000 * 120.00217 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2104 1.7169 0.0000 4 6 1.1972 2.6651 0.0005 5 6 1.5108 4.0111 0.0011 6 6 0.4089 5.0392 0.0022 7 6 2.8326 4.4173 0.0005 8 6 3.8485 3.4794 0.0057 9 6 3.5437 2.1271 -0.0001 10 7 4.5724 1.1746 -0.0004 11 6 5.7168 1.4186 0.6682 12 8 5.8904 2.4967 1.2033 13 7 6.6667 0.4659 0.7485 14 6 7.9082 0.7290 1.4804 15 6 8.7953 -0.4877 1.4187 16 1 8.4668 -1.3691 0.8878 17 6 10.0256 -0.4762 2.0409 18 7 10.4253 0.5969 2.6878 19 14 11.1248 -1.9846 1.9650 20 1 10.4489 -3.0508 1.1831 21 1 12.4093 -1.6287 1.3102 22 1 11.3899 -2.4737 3.3419 23 1 -0.3633 0.5138 0.8899 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 0.1638 2.3513 0.0003 27 1 0.1438 5.2865 1.0302 28 1 0.7501 5.9381 -0.5113 29 1 -0.4643 4.6366 -0.5112 30 1 3.0722 5.4704 0.0005 31 1 4.8797 3.8005 0.0101 32 1 4.4603 0.3399 -0.4816 33 1 6.5283 -0.3941 0.3217 34 1 8.4233 1.5769 1.0290 35 1 7.6754 0.9570 2.5206 36 1 11.2910 0.6051 3.1253 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000417211043.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:07:45 Heat of formation + Delta-G solvation = -11.263367 kcal Electronic energy + Delta-G solvation = -18831.850899 eV Core-core repulsion = 15827.926528 eV Total energy + Delta-G solvation = -3003.924371 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.20362 -38.51670 -34.96717 -34.12754 -32.45340 -31.44634 -31.12060 -29.05685 -27.45338 -25.93271 -23.12570 -22.83107 -21.43489 -20.20751 -18.27784 -17.70359 -16.70539 -16.06130 -15.46461 -15.09728 -14.80851 -14.59191 -14.18173 -14.09992 -14.00820 -13.70209 -13.58224 -13.10613 -12.66433 -12.53969 -12.31481 -11.99791 -11.96620 -11.80586 -11.24887 -10.93805 -10.92826 -10.37255 -10.30882 -9.95275 -9.67250 -9.37569 -9.36176 -8.75793 -8.21091 -7.85734 -7.26662 -6.16587 -4.23292 1.23276 1.39067 1.41907 2.29528 3.16385 3.24317 3.31917 3.35505 3.57360 3.95578 4.32203 4.75887 4.81439 4.82536 4.91111 4.92580 5.12842 5.19851 5.28704 5.38373 5.47756 5.52074 5.67995 5.77582 5.93649 6.24488 6.34005 6.58776 6.71198 7.02592 7.15164 7.41132 7.50341 7.52811 7.82409 7.98982 8.69240 8.83847 9.19352 9.43784 10.93645 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.026351 B = 0.003671 C = 0.003269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.331595 B = 7625.927678 C = 8563.632436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 S -0.119 6.119 3 C -0.120 4.120 4 C -0.116 4.116 5 C -0.098 4.098 6 C -0.108 4.108 7 C -0.103 4.103 8 C -0.102 4.102 9 C 0.198 3.802 10 N -0.691 5.691 11 C 0.693 3.307 12 O -0.583 6.583 13 N -0.720 5.720 14 C 0.266 3.734 15 C -0.542 4.542 16 H 0.064 0.936 17 C 0.064 3.936 18 N -0.885 5.885 19 Si 0.905 3.095 20 H -0.272 1.272 21 H -0.282 1.282 22 H -0.282 1.282 23 H 0.083 0.917 24 H 0.082 0.918 25 H 0.106 0.894 26 H 0.123 0.877 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.061 0.939 30 H 0.126 0.874 31 H 0.150 0.850 32 H 0.403 0.597 33 H 0.389 0.611 34 H 0.027 0.973 35 H 0.027 0.973 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.450 2.398 -7.738 22.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.311 4.311 2 S 0.121 5.879 3 C -0.235 4.235 4 C -0.140 4.140 5 C -0.101 4.101 6 C -0.165 4.165 7 C -0.124 4.124 8 C -0.124 4.124 9 C 0.096 3.904 10 N -0.339 5.339 11 C 0.393 3.607 12 O -0.461 6.461 13 N -0.372 5.372 14 C 0.145 3.855 15 C -0.581 4.581 16 H 0.082 0.918 17 C -0.140 4.140 18 N -0.522 5.522 19 Si 0.732 3.268 20 H -0.196 1.196 21 H -0.208 1.208 22 H -0.208 1.208 23 H 0.102 0.898 24 H 0.101 0.899 25 H 0.125 0.875 26 H 0.140 0.860 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.144 0.856 31 H 0.168 0.832 32 H 0.239 0.761 33 H 0.222 0.778 34 H 0.045 0.955 35 H 0.045 0.955 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -20.336 2.328 -7.078 21.658 hybrid contribution -0.279 -0.538 -0.338 0.694 sum -20.615 1.790 -7.416 21.981 Atomic orbital electron populations 1.23641 0.95055 1.06875 1.05493 1.85398 1.06172 1.03110 1.93170 1.21421 0.94827 0.96779 1.10499 1.20710 0.97346 0.92215 1.03716 1.19706 0.94868 0.93673 1.01809 1.20724 0.96304 0.97341 1.02141 1.20995 0.91589 0.99532 1.00280 1.21404 1.01414 0.90565 0.99019 1.17013 0.84838 0.89174 0.99412 1.42854 1.15272 1.20933 1.54875 1.16118 0.79711 0.85284 0.79573 1.90867 1.79268 1.24053 1.51875 1.45773 1.19171 1.15105 1.57111 1.19067 0.77851 0.97100 0.91501 1.21248 1.01980 0.99526 1.35314 0.91799 1.24942 0.97664 0.96623 0.94777 1.69987 1.20765 1.27864 1.33612 0.86344 0.80262 0.82289 0.77905 1.19625 1.20795 1.20793 0.89810 0.89911 0.87541 0.85964 0.91380 0.91524 0.91990 0.85642 0.83204 0.76080 0.77845 0.95460 0.95462 0.92479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 9.15 101.05 0.92 -0.15 16 2 S -0.12 -1.40 21.45 -107.50 -2.31 -3.70 16 3 C -0.12 -1.65 6.12 -38.91 -0.24 -1.89 16 4 C -0.12 -1.37 9.01 -39.40 -0.35 -1.73 16 5 C -0.10 -1.14 5.88 -104.62 -0.62 -1.75 16 6 C -0.11 -0.89 10.01 36.01 0.36 -0.53 16 7 C -0.10 -1.36 9.69 -39.55 -0.38 -1.75 16 8 C -0.10 -1.66 8.70 -39.43 -0.34 -2.00 16 9 C 0.20 3.21 6.32 -83.42 -0.53 2.68 16 10 N -0.69 -11.63 5.03 -14.06 -0.07 -11.71 16 11 C 0.69 14.63 8.41 -86.92 -0.73 13.90 16 12 O -0.58 -14.31 13.76 5.28 0.07 -14.24 16 13 N -0.72 -15.57 5.55 -66.41 -0.37 -15.94 16 14 C 0.27 7.09 5.43 -5.19 -0.03 7.06 16 15 C -0.54 -14.75 9.28 -34.44 -0.32 -15.07 16 16 H 0.06 1.63 7.60 -52.48 -0.40 1.23 16 17 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 18 N -0.88 -26.08 13.29 55.43 0.74 -25.35 16 19 Si 0.90 20.90 29.54 -169.99 -5.02 15.88 16 20 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 H 0.08 0.59 7.75 -51.93 -0.40 0.19 16 24 H 0.08 0.54 7.75 -51.93 -0.40 0.13 16 25 H 0.11 0.63 8.14 -51.92 -0.42 0.21 16 26 H 0.12 1.13 5.88 -52.49 -0.31 0.82 16 27 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.07 0.48 8.08 -51.93 -0.42 0.06 16 29 H 0.06 0.42 8.08 -51.93 -0.42 0.01 16 30 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 31 H 0.15 2.76 6.19 -52.49 -0.33 2.43 16 32 H 0.40 5.76 7.99 -40.82 -0.33 5.44 16 33 H 0.39 7.23 8.34 -40.82 -0.34 6.89 16 34 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.27 7.31 8.31 -40.82 -0.34 6.98 16 LS Contribution 319.99 15.07 4.82 4.82 Total: -1.00 -32.32 319.99 -9.08 -41.40 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -4.59 Total: 8.39 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: -2.35 Total: 0.44 kcal Atomic # 7 Polarization: -53.29 SS G_CDS: 0.30 Total: -52.99 kcal Atomic # 8 Polarization: -14.31 SS G_CDS: 0.07 Total: -14.24 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Atomic # 16 Polarization: -1.40 SS G_CDS: -2.31 Total: -3.70 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -32.32 -9.08 -41.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000417211043.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.135 kcal (2) G-P(sol) polarization free energy of solvation -32.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds