Wall clock time and date at job start Tue Mar 31 2020 01:07:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81410 * 1 3 3 C 1.76201 * 102.99754 * 2 1 4 4 C 1.38774 * 120.10516 * 0.02562 * 3 2 1 5 5 C 1.38203 * 119.98779 * 179.97438 * 4 3 2 6 6 C 1.50699 * 119.90045 * 180.02562 * 5 4 3 7 7 C 1.38290 * 120.19733 * 0.02562 * 5 4 3 8 8 C 1.38263 * 120.20293 * 359.70189 * 7 5 4 9 9 C 1.38630 * 120.01179 * 0.55097 * 8 7 5 10 10 N 1.40195 * 120.09765 * 179.74343 * 9 8 7 11 11 C 1.34772 * 119.99634 * 34.68196 * 10 9 8 12 12 O 1.21599 * 120.00380 * 355.51514 * 11 10 9 13 13 N 1.34774 * 120.00001 * 175.24529 * 11 10 9 14 14 C 1.46496 * 120.00428 * 180.27372 * 13 11 10 15 15 C 1.50703 * 109.47598 * 180.02562 * 14 13 11 16 16 H 1.08004 * 119.99421 * 359.97438 * 15 14 13 17 17 C 1.37872 * 120.00204 * 180.02562 * 15 14 13 18 18 N 1.31517 * 120.00219 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99988 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47170 * 359.97438 * 19 17 15 21 21 H 1.48504 * 109.47475 * 119.99357 * 19 17 15 22 22 H 1.48503 * 109.47436 * 239.99749 * 19 17 15 23 23 H 1.08994 * 109.46973 * 300.00266 * 1 2 3 24 24 H 1.08997 * 109.46638 * 60.00158 * 1 2 3 25 25 H 1.09000 * 109.46709 * 179.97438 * 1 2 3 26 26 H 1.08001 * 120.00291 * 359.96002 * 4 3 2 27 27 H 1.09003 * 109.47024 * 90.00103 * 6 5 4 28 28 H 1.09001 * 109.47156 * 209.99675 * 6 5 4 29 29 H 1.09000 * 109.47468 * 330.00381 * 6 5 4 30 30 H 1.08000 * 119.89723 * 179.97438 * 7 5 4 31 31 H 1.08002 * 119.99423 * 180.29569 * 8 7 5 32 32 H 0.96999 * 119.99736 * 214.67358 * 10 9 8 33 33 H 0.97003 * 120.00157 * 0.27546 * 13 11 10 34 34 H 1.09001 * 109.47057 * 299.99915 * 14 13 11 35 35 H 1.09004 * 109.47303 * 59.99792 * 14 13 11 36 36 H 0.97000 * 120.00217 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2104 1.7169 0.0000 4 6 1.1972 2.6651 0.0005 5 6 1.5108 4.0111 0.0011 6 6 0.4089 5.0392 0.0022 7 6 2.8326 4.4173 0.0005 8 6 3.8485 3.4794 0.0057 9 6 3.5437 2.1271 -0.0001 10 7 4.5724 1.1746 -0.0004 11 6 5.7168 1.4186 0.6682 12 8 5.8904 2.4967 1.2033 13 7 6.6667 0.4659 0.7485 14 6 7.9082 0.7290 1.4804 15 6 8.7953 -0.4877 1.4187 16 1 8.4668 -1.3691 0.8878 17 6 10.0256 -0.4762 2.0409 18 7 10.4253 0.5969 2.6878 19 14 11.1248 -1.9846 1.9650 20 1 10.4489 -3.0508 1.1831 21 1 12.4093 -1.6287 1.3102 22 1 11.3899 -2.4737 3.3419 23 1 -0.3633 0.5138 0.8899 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 0.1638 2.3513 0.0003 27 1 0.1438 5.2865 1.0302 28 1 0.7501 5.9381 -0.5113 29 1 -0.4643 4.6366 -0.5112 30 1 3.0722 5.4704 0.0005 31 1 4.8797 3.8005 0.0101 32 1 4.4603 0.3399 -0.4816 33 1 6.5283 -0.3941 0.3217 34 1 8.4233 1.5769 1.0290 35 1 7.6754 0.9570 2.5206 36 1 11.2910 0.6051 3.1253 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000417211043.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:07:45 Heat of formation + Delta-G solvation = -32.746422 kcal Electronic energy + Delta-G solvation = -18832.782474 eV Core-core repulsion = 15827.926528 eV Total energy + Delta-G solvation = -3004.855946 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.64554 -39.82568 -36.50123 -35.93112 -34.43768 -32.49081 -32.24170 -29.77126 -29.27784 -27.09748 -24.79639 -24.15520 -22.74196 -21.78885 -19.94005 -19.02435 -18.02737 -17.70477 -16.86566 -16.75585 -16.20744 -16.07487 -15.48215 -15.22729 -14.96781 -14.78516 -14.61786 -14.31435 -14.13537 -14.06707 -13.35141 -13.29966 -13.04210 -12.89773 -12.82631 -12.75354 -12.28892 -12.19542 -11.46608 -11.40899 -11.19299 -11.04408 -10.83146 -10.62785 -9.95687 -9.20258 -8.29968 -8.27765 -6.46188 0.16021 0.32565 0.52196 1.43112 1.44906 1.48317 1.57659 1.69160 2.05292 2.38387 2.71224 3.05487 3.33302 3.82098 3.99951 4.23985 4.30587 4.32959 4.35202 4.42648 4.66080 4.86185 4.89799 4.94028 5.01995 5.07769 5.18300 5.23492 5.28939 5.43242 5.52905 5.58792 5.64270 5.80855 5.99328 6.09601 6.64229 7.08952 7.23590 7.53252 8.82815 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.026351 B = 0.003671 C = 0.003269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.331595 B = 7625.927678 C = 8563.632436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 S -0.152 6.152 3 C -0.117 4.117 4 C -0.115 4.115 5 C -0.087 4.087 6 C -0.107 4.107 7 C -0.111 4.111 8 C -0.126 4.126 9 C 0.157 3.843 10 N -0.672 5.672 11 C 0.693 3.307 12 O -0.623 6.623 13 N -0.715 5.715 14 C 0.285 3.715 15 C -0.555 4.555 16 H 0.083 0.917 17 C 0.005 3.995 18 N -0.930 5.930 19 Si 0.987 3.013 20 H -0.254 1.254 21 H -0.278 1.278 22 H -0.278 1.278 23 H 0.093 0.907 24 H 0.099 0.901 25 H 0.126 0.874 26 H 0.157 0.843 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.143 0.857 31 H 0.116 0.884 32 H 0.416 0.584 33 H 0.406 0.594 34 H -0.009 1.009 35 H -0.011 1.011 36 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.318 0.952 -8.667 25.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.299 4.299 2 S 0.089 5.911 3 C -0.232 4.232 4 C -0.139 4.139 5 C -0.090 4.090 6 C -0.164 4.164 7 C -0.132 4.132 8 C -0.149 4.149 9 C 0.057 3.943 10 N -0.321 5.321 11 C 0.394 3.606 12 O -0.504 6.504 13 N -0.368 5.368 14 C 0.162 3.838 15 C -0.593 4.593 16 H 0.102 0.898 17 C -0.195 4.195 18 N -0.568 5.568 19 Si 0.810 3.190 20 H -0.177 1.177 21 H -0.204 1.204 22 H -0.204 1.204 23 H 0.112 0.888 24 H 0.118 0.882 25 H 0.144 0.856 26 H 0.175 0.825 27 H 0.097 0.903 28 H 0.095 0.905 29 H 0.102 0.898 30 H 0.160 0.840 31 H 0.134 0.866 32 H 0.254 0.746 33 H 0.241 0.759 34 H 0.009 0.991 35 H 0.007 0.993 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -23.281 0.855 -8.056 24.650 hybrid contribution 0.408 -0.004 -0.068 0.414 sum -22.873 0.851 -8.124 24.288 Atomic orbital electron populations 1.23794 0.90690 1.08645 1.06801 1.85530 1.10947 1.01759 1.92898 1.21597 0.93986 0.98474 1.09176 1.21177 0.98473 0.91915 1.02293 1.20170 0.95003 0.94741 0.99055 1.20816 0.95583 0.96683 1.03270 1.21222 0.91928 0.99850 1.00222 1.21284 1.00728 0.91739 1.01107 1.17250 0.85706 0.88897 1.02474 1.42473 1.14039 1.21674 1.53957 1.16206 0.80524 0.84418 0.79466 1.90841 1.80297 1.25635 1.53602 1.45352 1.18121 1.16143 1.57192 1.18495 0.79517 0.96263 0.89479 1.21609 1.02274 0.99898 1.35542 0.89850 1.26054 0.99364 1.00115 0.93961 1.70144 1.21514 1.30553 1.34591 0.85082 0.77775 0.78029 0.78138 1.17728 1.20350 1.20402 0.88806 0.88183 0.85562 0.82534 0.90326 0.90471 0.89799 0.83972 0.86618 0.74633 0.75896 0.99124 0.99346 0.92176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.46 9.15 113.37 1.04 -0.42 16 2 S -0.15 -3.30 21.45 -56.49 -1.21 -4.51 16 3 C -0.12 -3.11 6.12 22.70 0.14 -2.97 16 4 C -0.11 -2.40 9.01 22.39 0.20 -2.19 16 5 C -0.09 -1.82 5.88 -19.86 -0.12 -1.94 16 6 C -0.11 -1.34 10.01 71.24 0.71 -0.63 16 7 C -0.11 -2.93 9.69 22.29 0.22 -2.71 16 8 C -0.13 -4.36 8.70 22.37 0.19 -4.16 16 9 C 0.16 5.25 6.32 38.20 0.24 5.50 16 10 N -0.67 -23.57 5.03 -316.67 -1.59 -25.16 16 11 C 0.69 31.03 8.41 179.06 1.51 32.53 16 12 O -0.62 -32.99 13.76 -4.03 -0.06 -33.04 16 13 N -0.72 -32.34 5.55 -482.29 -2.68 -35.02 16 14 C 0.29 16.12 5.43 85.63 0.46 16.58 16 15 C -0.56 -30.75 9.28 25.60 0.24 -30.51 16 16 H 0.08 4.19 7.60 -2.91 -0.02 4.17 16 17 C 0.00 0.27 5.46 84.65 0.46 0.73 16 18 N -0.93 -56.53 13.29 21.45 0.28 -56.25 16 19 Si 0.99 42.80 29.54 68.60 2.03 44.82 16 20 H -0.25 -10.20 7.11 99.48 0.71 -9.49 16 21 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 22 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 23 H 0.09 0.92 7.75 -2.39 -0.02 0.90 16 24 H 0.10 0.83 7.75 -2.39 -0.02 0.81 16 25 H 0.13 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.16 2.14 5.88 -2.91 -0.02 2.13 16 27 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.08 0.85 8.08 -2.39 -0.02 0.83 16 29 H 0.08 0.74 8.08 -2.39 -0.02 0.72 16 30 H 0.14 3.09 8.06 -2.91 -0.02 3.07 16 31 H 0.12 4.72 6.19 -2.91 -0.02 4.70 16 32 H 0.42 12.14 7.99 -92.71 -0.74 11.39 16 33 H 0.41 15.35 8.34 -92.71 -0.77 14.58 16 34 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 35 H -0.01 -0.72 8.14 -2.38 -0.02 -0.74 16 36 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 Total: -1.00 -74.54 319.99 1.67 -72.87 By element: Atomic # 1 Polarization: 26.89 SS G_CDS: -0.40 Total: 26.49 kcal Atomic # 6 Polarization: 4.50 SS G_CDS: 5.30 Total: 9.80 kcal Atomic # 7 Polarization: -112.45 SS G_CDS: -3.98 Total: -116.43 kcal Atomic # 8 Polarization: -32.99 SS G_CDS: -0.06 Total: -33.04 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.82 kcal Atomic # 16 Polarization: -3.30 SS G_CDS: -1.21 Total: -4.51 kcal Total: -74.54 1.67 -72.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000417211043.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.119 kcal (2) G-P(sol) polarization free energy of solvation -74.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds