Wall clock time and date at job start Tue Mar 31 2020 01:08:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38224 * 119.62022 * 2 1 4 4 C 1.38630 * 119.16347 * 179.97438 * 3 2 1 5 5 C 1.38675 * 118.41860 * 0.25530 * 4 3 2 6 6 C 1.38181 * 119.15910 * 359.47628 * 5 4 3 7 7 C 1.50701 * 119.61258 * 180.25426 * 6 5 4 8 8 N 1.46501 * 109.47349 * 95.28171 * 7 6 5 9 9 C 1.46502 * 120.00118 * 89.99655 * 8 7 6 10 10 C 1.34774 * 119.99624 * 269.99724 * 8 7 6 11 11 O 1.21282 * 120.00010 * 359.97438 * 10 8 7 12 12 C 1.50699 * 119.99784 * 179.97438 * 10 8 7 13 13 S 1.81006 * 109.47150 * 179.97438 * 12 10 8 14 14 C 1.76195 * 99.99969 * 180.02562 * 13 12 10 15 15 H 1.07996 * 120.00383 * 0.02562 * 14 13 12 16 16 C 1.38800 * 120.00083 * 180.02562 * 14 13 12 17 17 N 1.31636 * 119.99830 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00355 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.46841 * 89.99881 * 18 16 14 20 20 H 1.48500 * 109.47487 * 210.00123 * 18 16 14 21 21 H 1.48500 * 109.46868 * 330.00473 * 18 16 14 22 22 N 1.31857 * 119.61823 * 179.97438 * 2 1 3 23 23 H 1.09007 * 109.46662 * 89.99795 * 1 2 3 24 24 H 1.08999 * 109.47158 * 209.99996 * 1 2 3 25 25 H 1.08991 * 109.47069 * 330.00334 * 1 2 3 26 26 H 1.07998 * 120.41893 * 359.97438 * 3 2 1 27 27 H 1.08002 * 120.78834 * 179.97438 * 4 3 2 28 28 H 1.07999 * 120.41613 * 179.75147 * 5 4 3 29 29 H 1.09008 * 109.47125 * 215.28261 * 7 6 5 30 30 H 1.08999 * 109.47102 * 335.27520 * 7 6 5 31 31 H 1.09002 * 109.46779 * 90.00095 * 9 8 7 32 32 H 1.09001 * 109.46786 * 210.00278 * 9 8 7 33 33 H 1.09002 * 109.46988 * 330.00295 * 9 8 7 34 34 H 1.08997 * 109.47183 * 299.99943 * 12 10 8 35 35 H 1.08994 * 109.47025 * 60.00313 * 12 10 8 36 36 H 0.96995 * 120.00097 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1902 1.2016 0.0000 4 6 3.5764 1.1906 0.0005 5 6 4.2267 -0.0343 -0.0044 6 6 3.4766 -1.1948 0.0014 7 6 4.1727 -2.5314 0.0020 8 7 4.2909 -3.0199 1.3781 9 6 3.2290 -3.8479 1.9552 10 6 5.3765 -2.7075 2.1130 11 8 6.2558 -2.0224 1.6351 12 6 5.4979 -3.2095 3.5288 13 16 7.0548 -2.6262 4.2444 14 6 6.9389 -3.3391 5.8515 15 1 6.0758 -3.9307 6.1189 16 6 7.9568 -3.1403 6.7740 17 7 9.0085 -2.4189 6.4483 18 14 7.8336 -3.8954 8.4781 19 1 8.4465 -5.2480 8.4656 20 1 8.5511 -3.0358 9.4535 21 1 6.4052 -4.0029 8.8698 22 7 2.1587 -1.1463 0.0005 23 1 -0.3633 0.0000 -1.0278 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8899 0.5137 26 1 1.6508 2.1373 -0.0004 27 1 4.1366 2.1139 0.0001 28 1 5.3056 -0.0805 -0.0081 29 1 3.5941 -3.2426 -0.5876 30 1 5.1667 -2.4235 -0.4320 31 1 3.4398 -4.8989 1.7574 32 1 3.1840 -3.6826 3.0317 33 1 2.2732 -3.5782 1.5059 34 1 4.6627 -2.8344 4.1201 35 1 5.4836 -4.2994 3.5302 36 1 9.7197 -2.2796 7.0930 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426307898.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:08:29 Heat of formation + Delta-G solvation = -2.731041 kcal Electronic energy + Delta-G solvation = -18915.022565 eV Core-core repulsion = 15911.468184 eV Total energy + Delta-G solvation = -3003.554381 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.49467 -39.17024 -35.45951 -33.26287 -32.59370 -32.42360 -29.93566 -28.18922 -26.90184 -25.73230 -25.31562 -22.53873 -21.92295 -19.24731 -17.65801 -16.80924 -16.48253 -16.23419 -15.81169 -15.72986 -14.80097 -14.72285 -14.48617 -13.89360 -13.41629 -13.28952 -13.01364 -12.88509 -12.64256 -12.46853 -12.40610 -12.28246 -11.95551 -11.78579 -11.68206 -11.05889 -11.01785 -10.75610 -9.90954 -9.79984 -9.61657 -9.41851 -9.06081 -8.87496 -8.53117 -8.22481 -6.49492 -6.21296 -3.91659 0.99144 1.22769 2.95790 3.04370 3.22660 3.26475 3.30713 3.56867 3.85979 4.08076 4.20928 4.60192 4.67301 4.90149 4.98544 5.10212 5.13836 5.25325 5.30427 5.37304 5.40203 5.42364 5.54132 5.59363 5.63831 5.72458 5.80627 5.87454 5.93632 6.13991 6.15647 6.18549 6.59741 6.66154 7.53235 7.60264 7.93812 8.35740 8.54530 9.24091 10.86159 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.026890 B = 0.003662 C = 0.003622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.043777 B = 7644.810937 C = 7727.748998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.119 3.881 3 C -0.174 4.174 4 C -0.074 4.074 5 C -0.150 4.150 6 C 0.114 3.886 7 C 0.169 3.831 8 N -0.616 5.616 9 C 0.081 3.919 10 C 0.534 3.466 11 O -0.515 6.515 12 C -0.149 4.149 13 S -0.061 6.061 14 C -0.535 4.535 15 H 0.072 0.928 16 C 0.074 3.926 17 N -0.868 5.868 18 Si 0.918 3.082 19 H -0.277 1.277 20 H -0.282 1.282 21 H -0.272 1.272 22 N -0.476 5.476 23 H 0.075 0.925 24 H 0.075 0.925 25 H 0.072 0.928 26 H 0.131 0.869 27 H 0.135 0.865 28 H 0.142 0.858 29 H 0.091 0.909 30 H 0.100 0.900 31 H 0.055 0.945 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.191 2.880 -13.581 21.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.019 4.019 3 C -0.194 4.194 4 C -0.100 4.100 5 C -0.171 4.171 6 C -0.025 4.025 7 C 0.045 3.955 8 N -0.352 5.352 9 C -0.062 4.062 10 C 0.322 3.678 11 O -0.389 6.389 12 C -0.300 4.300 13 S 0.165 5.835 14 C -0.683 4.683 15 H 0.090 0.910 16 C -0.136 4.136 17 N -0.503 5.503 18 Si 0.745 3.255 19 H -0.202 1.202 20 H -0.208 1.208 21 H -0.197 1.197 22 N -0.187 5.187 23 H 0.094 0.906 24 H 0.094 0.906 25 H 0.091 0.909 26 H 0.149 0.851 27 H 0.152 0.848 28 H 0.160 0.840 29 H 0.109 0.891 30 H 0.118 0.882 31 H 0.074 0.926 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.106 0.894 35 H 0.108 0.892 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -15.179 3.172 -14.222 21.041 hybrid contribution -0.661 -0.382 1.750 1.910 sum -15.840 2.789 -12.472 20.352 Atomic orbital electron populations 1.20673 0.88965 1.03351 1.02802 1.21236 0.96843 0.88379 0.95453 1.21936 0.95027 0.99165 1.03235 1.21631 0.94407 0.98517 0.95470 1.22164 1.02289 0.92676 0.99929 1.21653 0.89349 0.96197 0.95339 1.20197 1.00722 0.90484 0.84082 1.47828 1.21090 1.52967 1.13334 1.21802 0.90551 0.94276 0.99614 1.20392 0.80619 0.79422 0.87405 1.90665 1.39195 1.37101 1.71975 1.23549 1.07312 1.04339 0.94750 1.85349 1.16998 1.68644 1.12487 1.22862 1.08957 1.37902 0.98571 0.90958 1.24989 0.94503 0.95047 0.99020 1.70019 1.07988 1.36773 1.35540 0.86171 0.78364 0.78970 0.82022 1.20247 1.20756 1.19692 1.67281 1.09416 1.29483 1.12512 0.90650 0.90568 0.90894 0.85066 0.84751 0.83991 0.89060 0.88170 0.92595 0.90934 0.90694 0.89368 0.89176 0.92203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.80 10.17 36.01 0.37 -0.44 16 2 C 0.12 1.37 6.78 -82.59 -0.56 0.81 16 3 C -0.17 -1.84 9.74 -39.44 -0.38 -2.23 16 4 C -0.07 -0.86 10.18 -39.27 -0.40 -1.26 16 5 C -0.15 -2.06 9.72 -39.44 -0.38 -2.44 16 6 C 0.11 1.57 6.36 -82.59 -0.53 1.04 16 7 C 0.17 2.22 5.72 -5.19 -0.03 2.19 16 8 N -0.62 -9.22 2.86 -182.95 -0.52 -9.74 16 9 C 0.08 0.96 10.24 59.85 0.61 1.57 16 10 C 0.53 10.28 7.69 -10.99 -0.08 10.20 16 11 O -0.52 -11.45 15.42 5.56 0.09 -11.36 16 12 C -0.15 -3.10 4.71 36.01 0.17 -2.93 16 13 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 14 C -0.53 -15.33 9.50 30.94 0.29 -15.04 16 15 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 16 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 17 N -0.87 -26.24 13.22 55.49 0.73 -25.50 16 18 Si 0.92 21.49 29.55 -169.99 -5.02 16.46 16 19 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 22 N -0.48 -6.31 10.19 -5.74 -0.06 -6.37 16 23 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 24 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.07 0.46 8.08 -51.93 -0.42 0.04 16 26 H 0.13 1.02 8.06 -52.49 -0.42 0.59 16 27 H 0.13 1.25 8.06 -52.49 -0.42 0.82 16 28 H 0.14 2.03 8.04 -52.49 -0.42 1.60 16 29 H 0.09 0.99 8.07 -51.92 -0.42 0.57 16 30 H 0.10 1.35 7.32 -51.93 -0.38 0.97 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.88 6.44 -51.93 -0.33 0.54 16 33 H 0.07 0.80 8.07 -51.93 -0.42 0.38 16 34 H 0.09 1.74 7.40 -51.92 -0.38 1.35 16 35 H 0.09 1.74 8.11 -51.92 -0.42 1.32 16 36 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 327.62 15.07 4.94 4.94 Total: -1.00 -34.47 327.62 -7.94 -42.41 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: -4.86 Total: -0.43 kcal Atomic # 6 Polarization: -5.49 SS G_CDS: -1.02 Total: -6.51 kcal Atomic # 7 Polarization: -41.77 SS G_CDS: 0.15 Total: -41.62 kcal Atomic # 8 Polarization: -11.45 SS G_CDS: 0.09 Total: -11.36 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -34.47 -7.94 -42.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426307898.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.677 kcal (2) G-P(sol) polarization free energy of solvation -34.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds