Wall clock time and date at job start Tue Mar 31 2020 01:06:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38108 * 120.02705 * 2 1 4 4 C 1.38472 * 120.05166 * 179.97438 * 3 2 1 5 5 F 1.35095 * 119.95046 * 179.97438 * 4 3 2 6 6 C 1.38515 * 120.09879 * 0.02562 * 4 3 2 7 7 C 1.38073 * 120.05065 * 359.72491 * 6 4 3 8 8 C 1.38899 * 120.02124 * 179.97438 * 2 1 3 9 9 N 1.39811 * 120.05257 * 0.02829 * 8 2 1 10 10 C 1.34773 * 119.99998 * 155.41746 * 9 8 2 11 11 O 1.21389 * 119.99742 * 354.47994 * 10 9 8 12 12 C 1.49345 * 120.00044 * 174.47699 * 10 9 8 13 13 O 1.21359 * 119.99721 * 359.97438 * 12 10 9 14 14 N 1.34775 * 119.99831 * 180.27493 * 12 10 9 15 15 C 1.46496 * 119.99650 * 179.72143 * 14 12 10 16 16 C 1.50700 * 109.47117 * 179.97438 * 15 14 12 17 17 H 1.08003 * 120.00169 * 0.02562 * 16 15 14 18 18 C 1.37877 * 120.00353 * 180.02562 * 16 15 14 19 19 N 1.31520 * 120.00261 * 180.02562 * 18 16 15 20 20 Si 1.86806 * 119.99779 * 0.02562 * 18 16 15 21 21 H 1.48493 * 109.46847 * 89.99958 * 20 18 16 22 22 H 1.48505 * 109.46944 * 210.00324 * 20 18 16 23 23 H 1.48496 * 109.46911 * 329.99759 * 20 18 16 24 24 H 1.08999 * 109.47072 * 270.02289 * 1 2 3 25 25 H 1.08994 * 109.47267 * 30.01944 * 1 2 3 26 26 H 1.08996 * 109.47152 * 150.01787 * 1 2 3 27 27 H 1.07997 * 119.97356 * 359.96145 * 3 2 1 28 28 H 1.07999 * 119.97137 * 179.97438 * 6 4 3 29 29 H 1.07996 * 120.02371 * 180.29552 * 7 6 4 30 30 H 0.96996 * 119.99515 * 335.41493 * 9 8 2 31 31 H 0.96995 * 120.00111 * 359.72715 * 14 12 10 32 32 H 1.08993 * 109.47795 * 300.00328 * 15 14 12 33 33 H 1.09003 * 109.47304 * 60.00628 * 15 14 12 34 34 H 0.97003 * 119.99642 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1957 0.0000 4 6 3.5828 1.1963 0.0005 5 9 4.2568 2.3671 0.0000 6 6 4.2780 -0.0018 0.0005 7 6 3.5913 -1.1996 0.0057 8 6 2.2020 -1.2026 0.0005 9 7 1.5045 -2.4143 0.0005 10 6 2.0884 -3.5280 -0.4846 11 8 3.1794 -3.4605 -1.0124 12 6 1.3931 -4.8450 -0.3727 13 8 0.3026 -4.9124 0.1555 14 7 1.9795 -5.9594 -0.8528 15 6 1.3001 -7.2522 -0.7375 16 6 2.1610 -8.3282 -1.3476 17 1 3.1187 -8.0745 -1.7777 18 6 1.7262 -9.6366 -1.3566 19 7 2.4778 -10.5757 -1.8885 20 14 0.0696 -10.0754 -0.6133 21 1 -0.9822 -9.9794 -1.6570 22 1 0.1164 -11.4620 -0.0835 23 1 -0.2421 -9.1337 0.4918 24 1 -0.3633 0.0004 1.0277 25 1 -0.3633 0.8898 -0.5141 26 1 -0.3633 -0.8901 -0.5135 27 1 1.6582 2.1310 -0.0006 28 1 5.3580 0.0011 0.0005 29 1 4.1337 -2.1334 0.0106 30 1 0.6004 -2.4534 0.3496 31 1 2.8513 -5.9056 -1.2746 32 1 1.1258 -7.4787 0.3143 33 1 0.3461 -7.2095 -1.2630 34 1 2.1720 -11.4963 -1.8945 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427866182.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:07 Heat of formation + Delta-G solvation = -88.405263 kcal Electronic energy + Delta-G solvation = -20648.896734 eV Core-core repulsion = 17075.414063 eV Total energy + Delta-G solvation = -3573.482671 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.101 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.04737 -41.13529 -39.34864 -38.01867 -35.35075 -34.36848 -32.98542 -32.44824 -29.87831 -28.44135 -27.37483 -24.97677 -23.18599 -22.00235 -21.38889 -20.18108 -18.97338 -17.65392 -17.42343 -16.93921 -16.43640 -15.91163 -15.75940 -15.67013 -15.09163 -14.50388 -14.33443 -14.21270 -13.93956 -13.72345 -13.47557 -13.28668 -13.02556 -12.50156 -12.39583 -12.27214 -12.18626 -11.63000 -11.26694 -11.08889 -10.87913 -10.58424 -10.07791 -9.61494 -9.40184 -9.15316 -8.91183 -8.48285 -8.20898 -6.29401 -4.33756 0.71414 0.95343 1.64239 2.40639 3.19296 3.22052 3.27231 3.32376 3.50178 3.83071 4.02096 4.24378 4.41455 4.47330 4.78265 4.85212 4.94375 5.04723 5.16191 5.21422 5.25881 5.55545 5.76673 5.81756 5.96761 6.02852 6.11438 6.52584 6.66301 6.77242 6.85558 6.95709 7.19052 7.56741 7.91380 8.28312 8.38142 8.70200 9.27678 10.82288 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.039835 B = 0.003228 C = 0.003015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.725062 B = 8672.240491 C = 9284.846833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.087 4.087 3 C -0.134 4.134 4 C 0.080 3.920 5 F -0.142 7.142 6 C -0.135 4.135 7 C -0.099 4.099 8 C 0.141 3.859 9 N -0.645 5.645 10 C 0.509 3.491 11 O -0.497 6.497 12 C 0.494 3.506 13 O -0.537 6.537 14 N -0.662 5.662 15 C 0.218 3.782 16 C -0.550 4.550 17 H 0.083 0.917 18 C 0.080 3.920 19 N -0.887 5.887 20 Si 0.877 3.123 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.261 1.261 24 H 0.078 0.922 25 H 0.076 0.924 26 H 0.071 0.929 27 H 0.139 0.861 28 H 0.139 0.861 29 H 0.158 0.842 30 H 0.424 0.576 31 H 0.411 0.589 32 H 0.034 0.966 33 H 0.029 0.971 34 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.947 22.156 4.802 22.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.089 4.089 3 C -0.153 4.153 4 C 0.060 3.940 5 F -0.121 7.121 6 C -0.154 4.154 7 C -0.119 4.119 8 C 0.046 3.954 9 N -0.291 5.291 10 C 0.292 3.708 11 O -0.370 6.370 12 C 0.272 3.728 13 O -0.416 6.416 14 N -0.311 5.311 15 C 0.096 3.904 16 C -0.588 4.588 17 H 0.101 0.899 18 C -0.125 4.125 19 N -0.524 5.524 20 Si 0.703 3.297 21 H -0.197 1.197 22 H -0.207 1.207 23 H -0.185 1.185 24 H 0.096 0.904 25 H 0.095 0.905 26 H 0.089 0.911 27 H 0.156 0.844 28 H 0.157 0.843 29 H 0.175 0.825 30 H 0.263 0.737 31 H 0.247 0.753 32 H 0.052 0.948 33 H 0.047 0.953 34 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.913 21.835 4.746 22.427 hybrid contribution -0.642 -0.136 0.239 0.698 sum -2.555 21.699 4.985 22.410 Atomic orbital electron populations 1.20802 0.90005 1.03721 1.03067 1.19450 0.96524 0.90663 1.02290 1.20761 0.92125 0.98539 1.03879 1.17666 0.90108 0.81308 1.04949 1.91487 1.80397 1.46062 1.94132 1.21061 1.01053 0.90559 1.02757 1.21334 0.92314 0.99489 0.98798 1.17671 0.91555 0.84648 1.01534 1.43243 1.19393 1.06164 1.60340 1.20813 0.86111 0.85825 0.78048 1.90724 1.20096 1.86139 1.40066 1.19661 0.86367 0.84961 0.81789 1.90734 1.20297 1.86314 1.44269 1.46128 1.22671 1.07241 1.55080 1.19734 0.93801 0.78947 0.97888 1.21039 1.06045 0.91062 1.40613 0.89884 1.24783 0.97460 0.95886 0.94329 1.69875 1.37480 1.01434 1.43614 0.86822 0.84019 0.78395 0.80471 1.19722 1.20737 1.18486 0.90355 0.90545 0.91052 0.84360 0.84281 0.82497 0.73703 0.75319 0.94822 0.95287 0.92071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.83 9.45 36.01 0.34 -0.49 16 2 C -0.09 -0.83 5.90 -104.42 -0.62 -1.44 16 3 C -0.13 -1.24 9.67 -39.54 -0.38 -1.62 16 4 C 0.08 0.84 7.30 -39.39 -0.29 0.55 16 5 F -0.14 -1.55 17.26 2.25 0.04 -1.51 16 6 C -0.13 -1.44 10.02 -39.54 -0.40 -1.83 16 7 C -0.10 -1.20 8.71 -39.38 -0.34 -1.54 16 8 C 0.14 1.65 6.41 -83.72 -0.54 1.11 16 9 N -0.65 -7.91 4.97 -10.28 -0.05 -7.96 16 10 C 0.51 7.74 7.69 -11.64 -0.09 7.65 16 11 O -0.50 -8.16 13.63 5.46 0.07 -8.09 16 12 C 0.49 8.88 7.89 -11.64 -0.09 8.79 16 13 O -0.54 -10.53 16.48 5.49 0.09 -10.44 16 14 N -0.66 -13.12 5.54 -61.95 -0.34 -13.47 16 15 C 0.22 5.06 4.50 -5.20 -0.02 5.03 16 16 C -0.55 -14.63 9.83 -34.44 -0.34 -14.97 16 17 H 0.08 2.33 7.84 -52.48 -0.41 1.92 16 18 C 0.08 2.19 5.47 -17.82 -0.10 2.10 16 19 N -0.89 -25.77 13.96 55.43 0.77 -24.99 16 20 Si 0.88 20.45 27.47 -169.99 -4.67 15.79 16 21 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.26 -5.94 6.54 56.52 0.37 -5.57 16 24 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.08 0.43 8.09 -51.93 -0.42 0.01 16 26 H 0.07 0.52 6.98 -51.93 -0.36 0.16 16 27 H 0.14 0.97 8.06 -52.49 -0.42 0.54 16 28 H 0.14 1.23 8.06 -52.49 -0.42 0.81 16 29 H 0.16 2.06 5.79 -52.49 -0.30 1.76 16 30 H 0.42 4.52 6.87 -40.82 -0.28 4.24 16 31 H 0.41 7.73 7.79 -40.82 -0.32 7.41 16 32 H 0.03 0.81 7.20 -51.93 -0.37 0.43 16 33 H 0.03 0.69 7.57 -51.93 -0.39 0.29 16 34 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 303.59 15.07 4.58 4.58 Total: -1.00 -30.04 303.59 -5.67 -35.71 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -3.30 Total: 7.06 kcal Atomic # 6 Polarization: 6.19 SS G_CDS: -2.86 Total: 3.32 kcal Atomic # 7 Polarization: -46.80 SS G_CDS: 0.38 Total: -46.42 kcal Atomic # 8 Polarization: -18.69 SS G_CDS: 0.16 Total: -18.53 kcal Atomic # 9 Polarization: -1.55 SS G_CDS: 0.04 Total: -1.51 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -4.67 Total: 15.79 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -30.04 -5.67 -35.71 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427866182.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.692 kcal (2) G-P(sol) polarization free energy of solvation -30.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds