Wall clock time and date at job start Tue Mar 31 2020 01:06:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38108 * 120.02705 * 2 1 4 4 C 1.38472 * 120.05166 * 179.97438 * 3 2 1 5 5 F 1.35095 * 119.95046 * 179.97438 * 4 3 2 6 6 C 1.38515 * 120.09879 * 0.02562 * 4 3 2 7 7 C 1.38073 * 120.05065 * 359.72491 * 6 4 3 8 8 C 1.38899 * 120.02124 * 179.97438 * 2 1 3 9 9 N 1.39811 * 120.05257 * 0.02829 * 8 2 1 10 10 C 1.34773 * 119.99998 * 155.41746 * 9 8 2 11 11 O 1.21389 * 119.99742 * 354.47994 * 10 9 8 12 12 C 1.49345 * 120.00044 * 174.47699 * 10 9 8 13 13 O 1.21359 * 119.99721 * 359.97438 * 12 10 9 14 14 N 1.34775 * 119.99831 * 180.27493 * 12 10 9 15 15 C 1.46496 * 119.99650 * 179.72143 * 14 12 10 16 16 C 1.50700 * 109.47117 * 179.97438 * 15 14 12 17 17 H 1.08003 * 120.00169 * 0.02562 * 16 15 14 18 18 C 1.37877 * 120.00353 * 180.02562 * 16 15 14 19 19 N 1.31520 * 120.00261 * 180.02562 * 18 16 15 20 20 Si 1.86806 * 119.99779 * 0.02562 * 18 16 15 21 21 H 1.48493 * 109.46847 * 89.99958 * 20 18 16 22 22 H 1.48505 * 109.46944 * 210.00324 * 20 18 16 23 23 H 1.48496 * 109.46911 * 329.99759 * 20 18 16 24 24 H 1.08999 * 109.47072 * 270.02289 * 1 2 3 25 25 H 1.08994 * 109.47267 * 30.01944 * 1 2 3 26 26 H 1.08996 * 109.47152 * 150.01787 * 1 2 3 27 27 H 1.07997 * 119.97356 * 359.96145 * 3 2 1 28 28 H 1.07999 * 119.97137 * 179.97438 * 6 4 3 29 29 H 1.07996 * 120.02371 * 180.29552 * 7 6 4 30 30 H 0.96996 * 119.99515 * 335.41493 * 9 8 2 31 31 H 0.96995 * 120.00111 * 359.72715 * 14 12 10 32 32 H 1.08993 * 109.47795 * 300.00328 * 15 14 12 33 33 H 1.09003 * 109.47304 * 60.00628 * 15 14 12 34 34 H 0.97003 * 119.99642 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1957 0.0000 4 6 3.5828 1.1963 0.0005 5 9 4.2568 2.3671 0.0000 6 6 4.2780 -0.0018 0.0005 7 6 3.5913 -1.1996 0.0057 8 6 2.2020 -1.2026 0.0005 9 7 1.5045 -2.4143 0.0005 10 6 2.0884 -3.5280 -0.4846 11 8 3.1794 -3.4605 -1.0124 12 6 1.3931 -4.8450 -0.3727 13 8 0.3026 -4.9124 0.1555 14 7 1.9795 -5.9594 -0.8528 15 6 1.3001 -7.2522 -0.7375 16 6 2.1610 -8.3282 -1.3476 17 1 3.1187 -8.0745 -1.7777 18 6 1.7262 -9.6366 -1.3566 19 7 2.4778 -10.5757 -1.8885 20 14 0.0696 -10.0754 -0.6133 21 1 -0.9822 -9.9794 -1.6570 22 1 0.1164 -11.4620 -0.0835 23 1 -0.2421 -9.1337 0.4918 24 1 -0.3633 0.0004 1.0277 25 1 -0.3633 0.8898 -0.5141 26 1 -0.3633 -0.8901 -0.5135 27 1 1.6582 2.1310 -0.0006 28 1 5.3580 0.0011 0.0005 29 1 4.1337 -2.1334 0.0106 30 1 0.6004 -2.4534 0.3496 31 1 2.8513 -5.9056 -1.2746 32 1 1.1258 -7.4787 0.3143 33 1 0.3461 -7.2095 -1.2630 34 1 2.1720 -11.4963 -1.8945 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427866182.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:06 Heat of formation + Delta-G solvation = -109.178009 kcal Electronic energy + Delta-G solvation = -20649.797507 eV Core-core repulsion = 17075.414063 eV Total energy + Delta-G solvation = -3574.383444 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.101 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.88423 -42.28034 -40.54312 -39.24573 -36.70371 -35.79047 -34.44027 -33.72021 -30.87228 -30.19474 -28.12270 -26.33210 -24.40847 -23.33285 -22.44545 -21.53472 -20.30469 -18.82585 -18.62460 -18.21979 -17.59013 -17.26267 -17.02923 -16.69376 -16.58289 -15.95006 -15.66866 -15.22921 -14.94106 -14.77091 -14.54182 -14.42386 -14.25982 -14.04812 -13.83075 -13.13852 -13.03505 -12.87151 -12.76003 -12.69512 -12.15094 -11.91626 -11.70172 -11.55920 -10.93217 -10.74992 -10.19770 -9.95355 -9.11189 -8.39722 -6.49458 -0.27087 0.15969 0.45443 1.16780 1.37105 1.39231 1.50300 1.98612 2.29050 2.53627 2.57954 2.95421 3.22716 3.33347 3.67760 3.73359 4.08865 4.18438 4.29641 4.56664 4.64829 4.78380 4.80617 4.95722 5.01009 5.12185 5.14135 5.18015 5.22182 5.23299 5.23714 5.77763 5.85348 6.04471 6.40131 6.50996 6.64057 6.86745 7.17153 8.75225 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.039835 B = 0.003228 C = 0.003015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.725062 B = 8672.240491 C = 9284.846833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.076 4.076 3 C -0.129 4.129 4 C 0.075 3.925 5 F -0.144 7.144 6 C -0.141 4.141 7 C -0.113 4.113 8 C 0.119 3.881 9 N -0.627 5.627 10 C 0.517 3.483 11 O -0.513 6.513 12 C 0.499 3.501 13 O -0.549 6.549 14 N -0.670 5.670 15 C 0.229 3.771 16 C -0.556 4.556 17 H 0.054 0.946 18 C 0.025 3.975 19 N -0.932 5.932 20 Si 0.943 3.057 21 H -0.262 1.262 22 H -0.276 1.276 23 H -0.250 1.250 24 H 0.095 0.905 25 H 0.095 0.905 26 H 0.067 0.933 27 H 0.167 0.833 28 H 0.151 0.849 29 H 0.142 0.858 30 H 0.433 0.567 31 H 0.414 0.586 32 H 0.031 0.969 33 H 0.030 0.970 34 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.833 24.226 5.631 25.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.079 4.079 3 C -0.148 4.148 4 C 0.055 3.945 5 F -0.123 7.123 6 C -0.160 4.160 7 C -0.133 4.133 8 C 0.024 3.976 9 N -0.274 5.274 10 C 0.300 3.700 11 O -0.388 6.388 12 C 0.279 3.721 13 O -0.429 6.429 14 N -0.320 5.320 15 C 0.106 3.894 16 C -0.593 4.593 17 H 0.072 0.928 18 C -0.176 4.176 19 N -0.571 5.571 20 Si 0.766 3.234 21 H -0.187 1.187 22 H -0.201 1.201 23 H -0.174 1.174 24 H 0.113 0.887 25 H 0.114 0.886 26 H 0.086 0.914 27 H 0.184 0.816 28 H 0.168 0.832 29 H 0.159 0.841 30 H 0.273 0.727 31 H 0.250 0.750 32 H 0.049 0.951 33 H 0.048 0.952 34 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.808 23.962 5.589 24.898 hybrid contribution 0.014 -0.635 -0.023 0.636 sum -3.794 23.327 5.567 24.280 Atomic orbital electron populations 1.20917 0.87872 1.04552 1.04390 1.19724 0.97974 0.89710 1.00446 1.21076 0.91651 0.99556 1.02475 1.17839 0.90798 0.81047 1.04816 1.91484 1.80585 1.46094 1.94136 1.21164 1.01798 0.90317 1.02696 1.21265 0.92778 0.99389 0.99900 1.17849 0.91573 0.84845 1.03284 1.43043 1.19531 1.05599 1.59177 1.20141 0.85753 0.85443 0.78695 1.90739 1.20636 1.86167 1.41218 1.20012 0.86014 0.85493 0.80536 1.90718 1.20896 1.86772 1.44494 1.45958 1.22945 1.06943 1.56182 1.19388 0.93247 0.79579 0.97162 1.21259 1.05472 0.92357 1.40244 0.92785 1.25680 1.01362 0.95788 0.94726 1.70000 1.39687 1.02046 1.45339 0.85775 0.79246 0.78377 0.80023 1.18720 1.20147 1.17367 0.88676 0.88601 0.91376 0.81570 0.83165 0.84080 0.72674 0.74960 0.95083 0.95179 0.91748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.27 9.45 71.24 0.67 -0.60 16 2 C -0.08 -1.25 5.90 -19.74 -0.12 -1.37 16 3 C -0.13 -1.99 9.67 22.29 0.22 -1.78 16 4 C 0.07 1.43 7.30 22.39 0.16 1.59 16 5 F -0.14 -2.87 17.26 44.97 0.78 -2.09 16 6 C -0.14 -2.86 10.02 22.30 0.22 -2.64 16 7 C -0.11 -2.67 8.71 22.40 0.20 -2.48 16 8 C 0.12 2.60 6.41 38.19 0.24 2.84 16 9 N -0.63 -14.53 4.97 -304.79 -1.51 -16.05 16 10 C 0.52 15.43 7.69 87.24 0.67 16.11 16 11 O -0.51 -16.89 13.63 -3.37 -0.05 -16.93 16 12 C 0.50 17.65 7.89 87.24 0.69 18.34 16 13 O -0.55 -20.81 16.48 -3.27 -0.05 -20.87 16 14 N -0.67 -26.64 5.54 -468.26 -2.59 -29.24 16 15 C 0.23 10.57 4.50 85.63 0.38 10.96 16 16 C -0.56 -30.10 9.83 25.60 0.25 -29.84 16 17 H 0.05 3.16 7.84 -2.91 -0.02 3.14 16 18 C 0.02 1.37 5.47 84.65 0.46 1.84 16 19 N -0.93 -55.13 13.96 21.45 0.30 -54.83 16 20 Si 0.94 41.80 27.47 68.60 1.88 43.69 16 21 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 22 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 23 H -0.25 -10.57 6.54 99.48 0.65 -9.92 16 24 H 0.09 0.73 8.14 -2.39 -0.02 0.72 16 25 H 0.10 0.68 8.09 -2.39 -0.02 0.66 16 26 H 0.07 0.79 6.98 -2.39 -0.02 0.77 16 27 H 0.17 1.63 8.06 -2.91 -0.02 1.61 16 28 H 0.15 2.57 8.06 -2.91 -0.02 2.55 16 29 H 0.14 3.77 5.79 -2.91 -0.02 3.76 16 30 H 0.43 8.39 6.87 -92.71 -0.64 7.75 16 31 H 0.41 15.92 7.79 -92.71 -0.72 15.20 16 32 H 0.03 1.46 7.20 -2.39 -0.02 1.44 16 33 H 0.03 1.39 7.57 -2.39 -0.02 1.38 16 34 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 Total: -1.00 -64.33 303.59 2.57 -61.76 By element: Atomic # 1 Polarization: 21.83 SS G_CDS: -0.24 Total: 21.59 kcal Atomic # 6 Polarization: 8.91 SS G_CDS: 4.06 Total: 12.97 kcal Atomic # 7 Polarization: -96.30 SS G_CDS: -3.81 Total: -100.11 kcal Atomic # 8 Polarization: -37.70 SS G_CDS: -0.10 Total: -37.80 kcal Atomic # 9 Polarization: -2.87 SS G_CDS: 0.78 Total: -2.09 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 1.88 Total: 43.69 kcal Total: -64.33 2.57 -61.76 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427866182.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.416 kcal (2) G-P(sol) polarization free energy of solvation -64.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds