Wall clock time and date at job start Tue Mar 31 2020 01:05:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38109 * 119.97634 * 2 1 4 4 C 1.38896 * 119.94872 * 179.97438 * 3 2 1 5 5 N 1.39805 * 120.04571 * 179.97438 * 4 3 2 6 6 C 1.34780 * 120.00389 * 33.34774 * 5 4 3 7 7 O 1.21379 * 119.99695 * 5.26904 * 6 5 4 8 8 C 1.49350 * 119.99916 * 185.27575 * 6 5 4 9 9 O 1.21359 * 119.99975 * 359.97438 * 8 6 5 10 10 N 1.34773 * 119.99723 * 179.97438 * 8 6 5 11 11 C 1.46500 * 119.99887 * 179.97438 * 10 8 6 12 12 C 1.50705 * 109.46951 * 180.02562 * 11 10 8 13 13 H 1.07997 * 119.99937 * 0.02562 * 12 11 10 14 14 C 1.37880 * 119.99635 * 180.02562 * 12 11 10 15 15 N 1.31513 * 120.00180 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 119.99676 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47237 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.47237 * 120.00040 * 16 14 12 19 19 H 1.48496 * 109.47347 * 239.99916 * 16 14 12 20 20 C 1.38933 * 119.89863 * 0.02562 * 4 3 2 21 21 C 1.38063 * 119.95117 * 359.97191 * 20 4 3 22 22 C 1.38473 * 119.97418 * 179.97438 * 2 1 3 23 23 F 1.35107 * 119.94827 * 359.73367 * 22 2 1 24 24 H 1.09001 * 109.47225 * 270.02044 * 1 2 3 25 25 H 1.09001 * 109.47005 * 30.02585 * 1 2 3 26 26 H 1.09006 * 109.46653 * 150.02111 * 1 2 3 27 27 H 1.08000 * 120.02351 * 359.97438 * 3 2 1 28 28 H 0.97001 * 119.99840 * 213.34496 * 5 4 3 29 29 H 0.97007 * 120.00247 * 0.02562 * 10 8 6 30 30 H 1.09000 * 109.47287 * 300.00395 * 11 10 8 31 31 H 1.08994 * 109.46760 * 60.00591 * 11 10 8 32 32 H 0.97001 * 120.00099 * 179.97438 * 15 14 12 33 33 H 1.08003 * 120.02043 * 179.97438 * 20 4 3 34 34 H 1.08001 * 119.97242 * 180.02562 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1963 0.0000 4 6 3.5861 1.1957 0.0005 5 7 4.2866 2.4055 0.0000 6 6 3.7804 3.4778 0.6407 7 8 2.7656 3.3689 1.2977 8 6 4.4680 4.7999 0.5422 9 8 5.4828 4.9087 -0.1144 10 7 3.9614 5.8722 1.1824 11 6 4.6362 7.1690 1.0863 12 6 3.8734 8.1928 1.8871 13 1 2.9760 7.9060 2.4152 14 6 4.3212 9.4955 1.9455 15 7 5.4142 9.8446 1.3028 16 14 3.3754 10.7646 2.9375 17 1 2.1908 10.1225 3.5617 18 1 4.2541 11.3186 3.9988 19 1 2.9297 11.8616 2.0414 20 6 4.2780 -0.0091 0.0005 21 6 3.5840 -1.2026 0.0006 22 6 2.1989 -1.1995 0.0005 23 9 1.5218 -2.3687 0.0065 24 1 -0.3634 0.0004 1.0277 25 1 -0.3633 0.8898 -0.5142 26 1 -0.3633 -0.8902 -0.5135 27 1 1.6571 2.1316 -0.0004 28 1 5.1371 2.4733 -0.4615 29 1 3.1504 5.7852 1.7076 30 1 5.6490 7.0817 1.4795 31 1 4.6772 7.4807 0.0426 32 1 5.7291 10.7612 1.3436 33 1 5.3580 -0.0119 0.0005 34 1 4.1215 -2.1393 0.0010 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427873700.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:05:57 Heat of formation + Delta-G solvation = -116.412351 kcal Electronic energy + Delta-G solvation = -20507.620429 eV Core-core repulsion = 16932.923280 eV Total energy + Delta-G solvation = -3574.697149 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.88481 -42.15374 -40.43137 -39.19889 -36.71680 -35.87713 -34.38685 -33.64496 -30.75800 -29.65175 -28.08711 -26.43767 -24.58208 -23.56188 -22.40764 -21.47003 -20.19372 -18.58095 -18.44130 -18.34381 -17.60471 -17.18584 -16.97530 -16.74414 -16.63827 -15.92115 -15.52814 -15.16466 -14.87872 -14.44481 -14.36140 -14.21151 -14.11239 -14.08960 -13.90035 -13.27110 -13.02319 -12.92192 -12.76678 -12.75740 -12.23723 -12.10227 -11.50624 -11.38467 -10.86078 -10.75524 -10.06993 -9.93905 -9.17039 -8.32091 -6.47968 -0.23526 0.16644 0.45291 1.22007 1.44264 1.45119 1.58669 2.02938 2.35501 2.53442 2.65748 3.03655 3.25571 3.39556 3.66819 3.76635 4.08392 4.17012 4.34715 4.63577 4.69852 4.76858 4.96984 5.05730 5.08555 5.10496 5.17037 5.19188 5.24451 5.27658 5.50463 5.77099 5.81735 5.92109 6.44224 6.57148 6.70475 6.97918 7.25167 8.79742 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.036855 B = 0.003046 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.554261 B = 9188.755121 C = 9807.568854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.106 4.106 3 C -0.112 4.112 4 C 0.124 3.876 5 N -0.632 5.632 6 C 0.521 3.479 7 O -0.515 6.515 8 C 0.494 3.506 9 O -0.556 6.556 10 N -0.672 5.672 11 C 0.263 3.737 12 C -0.561 4.561 13 H 0.080 0.920 14 C 0.011 3.989 15 N -0.925 5.925 16 Si 0.982 3.018 17 H -0.258 1.258 18 H -0.277 1.277 19 H -0.277 1.277 20 C -0.109 4.109 21 C -0.121 4.121 22 C 0.069 3.931 23 F -0.141 7.141 24 H 0.080 0.920 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.131 0.869 28 H 0.433 0.567 29 H 0.413 0.587 30 H 0.006 0.994 31 H 0.006 0.994 32 H 0.271 0.729 33 H 0.168 0.832 34 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.935 -21.764 -2.821 22.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.107 4.107 3 C -0.132 4.132 4 C 0.031 3.969 5 N -0.280 5.280 6 C 0.303 3.697 7 O -0.389 6.389 8 C 0.274 3.726 9 O -0.436 6.436 10 N -0.322 5.322 11 C 0.141 3.859 12 C -0.599 4.599 13 H 0.098 0.902 14 C -0.190 4.190 15 N -0.563 5.563 16 Si 0.805 3.195 17 H -0.181 1.181 18 H -0.203 1.203 19 H -0.203 1.203 20 C -0.129 4.129 21 C -0.140 4.140 22 C 0.049 3.951 23 F -0.120 7.120 24 H 0.099 0.901 25 H 0.097 0.903 26 H 0.097 0.903 27 H 0.149 0.851 28 H 0.274 0.726 29 H 0.250 0.750 30 H 0.024 0.976 31 H 0.024 0.976 32 H 0.080 0.920 33 H 0.185 0.815 34 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -5.838 -21.561 -2.854 22.519 hybrid contribution -0.130 0.837 0.303 0.899 sum -5.969 -20.724 -2.551 21.717 Atomic orbital electron populations 1.20791 0.88780 1.04011 1.03551 1.19981 0.98208 0.91084 1.01441 1.20946 0.92808 0.98389 1.01025 1.17970 0.91459 0.85298 1.02199 1.43048 1.25267 1.07876 1.51787 1.20102 0.84743 0.85299 0.79541 1.90757 1.24393 1.84823 1.38963 1.20150 0.85280 0.85755 0.81407 1.90725 1.25362 1.85596 1.41904 1.46159 1.28999 1.09209 1.47837 1.18847 0.92475 0.78310 0.96281 1.21600 1.11760 0.94428 1.32098 0.90214 1.25947 0.95888 1.00684 0.96462 1.70099 1.23577 1.19774 1.42883 0.85151 0.78554 0.77847 0.77950 1.18148 1.20298 1.20278 1.21048 1.01841 0.88901 1.01135 1.21222 0.91502 1.00262 1.01012 1.17721 0.90746 0.80708 1.05946 1.91468 1.80458 1.45959 1.94131 0.90129 0.90288 0.90283 0.85097 0.72647 0.75017 0.97580 0.97592 0.92038 0.81483 0.81312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.96 9.83 71.24 0.70 -1.26 16 2 C -0.11 -2.21 5.88 -19.84 -0.12 -2.33 16 3 C -0.11 -2.67 8.31 22.40 0.19 -2.48 16 4 C 0.12 2.76 6.28 38.19 0.24 3.00 16 5 N -0.63 -15.42 5.33 -304.79 -1.62 -17.05 16 6 C 0.52 16.42 7.62 87.24 0.67 17.09 16 7 O -0.51 -17.46 14.16 -3.34 -0.05 -17.51 16 8 C 0.49 19.13 7.89 87.24 0.69 19.82 16 9 O -0.56 -23.97 16.48 -3.28 -0.05 -24.03 16 10 N -0.67 -28.53 5.54 -468.25 -2.59 -31.13 16 11 C 0.26 13.74 5.43 85.63 0.46 14.21 16 12 C -0.56 -29.93 9.28 25.60 0.24 -29.69 16 13 H 0.08 3.96 7.60 -2.91 -0.02 3.94 16 14 C 0.01 0.57 5.46 84.66 0.46 1.03 16 15 N -0.93 -53.66 13.29 21.45 0.28 -53.38 16 16 Si 0.98 41.68 29.54 68.60 2.03 43.71 16 17 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 18 H -0.28 -11.55 7.11 99.48 0.71 -10.84 16 19 H -0.28 -11.53 7.11 99.48 0.71 -10.82 16 20 C -0.11 -1.75 9.96 22.39 0.22 -1.53 16 21 C -0.12 -1.85 10.02 22.29 0.22 -1.63 16 22 C 0.07 1.32 7.24 22.39 0.16 1.48 16 23 F -0.14 -2.79 16.47 44.97 0.74 -2.05 16 24 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 25 H 0.08 1.25 8.08 -2.39 -0.02 1.23 16 26 H 0.08 1.19 7.64 -2.38 -0.02 1.17 16 27 H 0.13 3.50 6.41 -2.91 -0.02 3.48 16 28 H 0.43 8.99 8.30 -92.71 -0.77 8.22 16 29 H 0.41 16.02 7.79 -92.70 -0.72 15.30 16 30 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 31 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 32 H 0.27 14.62 8.31 -92.71 -0.77 13.85 16 33 H 0.17 1.70 8.06 -2.91 -0.02 1.67 16 34 H 0.17 1.58 8.06 -2.91 -0.02 1.56 16 Total: -1.00 -65.16 309.98 2.54 -62.61 By element: Atomic # 1 Polarization: 21.41 SS G_CDS: -0.32 Total: 21.08 kcal Atomic # 6 Polarization: 13.59 SS G_CDS: 4.14 Total: 17.72 kcal Atomic # 7 Polarization: -97.62 SS G_CDS: -3.93 Total: -101.55 kcal Atomic # 8 Polarization: -41.43 SS G_CDS: -0.10 Total: -41.53 kcal Atomic # 9 Polarization: -2.79 SS G_CDS: 0.74 Total: -2.05 kcal Atomic # 14 Polarization: 41.68 SS G_CDS: 2.03 Total: 43.71 kcal Total: -65.16 2.54 -62.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427873700.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.798 kcal (2) G-P(sol) polarization free energy of solvation -65.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds