Wall clock time and date at job start Tue Mar 31 2020 01:06:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38125 * 120.01149 * 2 1 4 4 C 1.38237 * 120.10111 * 180.24781 * 3 2 1 5 5 C 1.38540 * 120.12433 * 359.45164 * 4 3 2 6 6 F 1.35103 * 119.99121 * 180.25243 * 5 4 3 7 7 C 1.38300 * 120.02673 * 0.26866 * 5 4 3 8 8 C 1.38915 * 119.89752 * 0.02562 * 7 5 4 9 9 N 1.39718 * 120.05951 * 180.02562 * 8 7 5 10 10 C 1.34771 * 120.00173 * 325.25640 * 9 8 7 11 11 O 1.21370 * 120.00050 * 4.51266 * 10 9 8 12 12 C 1.49352 * 120.00060 * 184.51302 * 10 9 8 13 13 O 1.21362 * 120.00118 * 359.97438 * 12 10 9 14 14 N 1.34776 * 120.00423 * 180.02562 * 12 10 9 15 15 C 1.46503 * 120.00259 * 179.97438 * 14 12 10 16 16 C 1.50705 * 109.46911 * 180.02562 * 15 14 12 17 17 H 1.07995 * 119.99946 * 359.97438 * 16 15 14 18 18 C 1.37874 * 119.99608 * 179.97438 * 16 15 14 19 19 N 1.31520 * 120.00319 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99722 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.46854 * 90.00536 * 20 18 16 22 22 H 1.48498 * 109.46901 * 210.00036 * 20 18 16 23 23 H 1.48500 * 109.47002 * 330.00320 * 20 18 16 24 24 H 1.08998 * 109.47442 * 270.29844 * 1 2 3 25 25 H 1.08996 * 109.46987 * 30.30366 * 1 2 3 26 26 H 1.09000 * 109.47040 * 150.29784 * 1 2 3 27 27 H 1.07999 * 119.95067 * 359.97438 * 3 2 1 28 28 H 1.07999 * 119.93859 * 179.71863 * 4 3 2 29 29 H 1.08002 * 120.05362 * 179.97438 * 7 5 4 30 30 H 0.96999 * 119.99488 * 145.26393 * 9 8 7 31 31 H 0.97001 * 119.99806 * 0.02562 * 14 12 10 32 32 H 1.09002 * 109.47106 * 300.00110 * 15 14 12 33 33 H 1.08994 * 109.46772 * 59.99832 * 15 14 12 34 34 H 0.97001 * 119.99914 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1961 0.0000 4 6 3.5802 1.1982 -0.0052 5 6 4.2774 0.0011 0.0011 6 9 5.6284 0.0064 0.0012 7 6 3.5910 -1.1996 0.0069 8 6 2.2019 -1.2029 0.0060 9 7 1.5050 -2.4139 0.0124 10 6 2.0005 -3.4801 -0.6463 11 8 3.0905 -3.4133 -1.1761 12 6 1.2085 -4.7439 -0.7244 13 8 0.1189 -4.8109 -0.1943 14 7 1.7043 -5.8104 -1.3827 15 6 0.9276 -7.0503 -1.4588 16 6 1.7000 -8.0795 -2.2431 17 1 2.6720 -7.8344 -2.6450 18 6 1.1657 -9.3340 -2.4475 19 7 -0.0182 -9.6323 -1.9585 20 14 2.1229 -10.6096 -3.4203 21 1 2.9787 -11.3967 -2.4965 22 1 1.1741 -11.5189 -4.1118 23 1 2.9765 -9.9272 -4.4257 24 1 -0.3634 0.0054 1.0276 25 1 -0.3633 0.8872 -0.5185 26 1 -0.3633 -0.8926 -0.5092 27 1 1.6572 2.1310 -0.0004 28 1 4.1177 2.1349 -0.0098 29 1 4.1341 -2.1331 0.0114 30 1 0.6644 -2.4871 0.4909 31 1 2.5757 -5.7573 -1.8055 32 1 0.7419 -7.4251 -0.4522 33 1 -0.0231 -6.8535 -1.9543 34 1 -0.3938 -10.5150 -2.1020 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427878025.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:10 Heat of formation + Delta-G solvation = -94.185406 kcal Electronic energy + Delta-G solvation = -20704.501807 eV Core-core repulsion = 17130.768491 eV Total energy + Delta-G solvation = -3573.733316 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.101 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.99917 -41.01506 -39.25153 -37.91286 -35.29320 -34.26767 -32.61670 -32.39354 -30.30663 -27.83359 -26.85317 -25.02692 -23.29754 -22.08014 -21.46329 -20.04560 -18.91992 -17.98263 -16.87635 -16.34831 -16.21784 -15.83214 -15.66149 -15.41524 -15.20069 -15.02099 -14.32944 -14.16098 -13.93880 -13.68813 -13.52714 -13.19350 -12.40847 -12.17184 -12.10115 -11.98119 -11.91917 -11.80926 -11.20284 -11.02818 -10.94586 -10.58690 -10.35797 -9.52553 -9.24359 -8.91001 -8.87419 -8.39200 -8.17080 -6.25573 -4.33196 0.78116 0.97224 1.73078 2.50045 3.21713 3.28145 3.28193 3.31308 3.57477 3.87633 4.17039 4.29415 4.47957 4.61181 4.76733 4.93362 4.97427 5.11362 5.19515 5.34478 5.39784 5.62431 5.78075 5.89159 5.97444 6.07216 6.16980 6.69840 6.88973 7.01719 7.11615 7.30971 7.49769 7.73479 7.82465 8.30306 8.49006 8.77539 9.33385 10.84439 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.029525 B = 0.003369 C = 0.003071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.135935 B = 8308.880162 C = 9114.513220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.119 4.119 3 C -0.074 4.074 4 C -0.167 4.167 5 C 0.111 3.889 6 F -0.137 7.137 7 C -0.155 4.155 8 C 0.176 3.824 9 N -0.649 5.649 10 C 0.509 3.491 11 O -0.500 6.500 12 C 0.492 3.508 13 O -0.535 6.535 14 N -0.668 5.668 15 C 0.246 3.754 16 C -0.548 4.548 17 H 0.067 0.933 18 C 0.066 3.934 19 N -0.885 5.885 20 Si 0.907 3.093 21 H -0.278 1.278 22 H -0.284 1.284 23 H -0.271 1.271 24 H 0.075 0.925 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.137 0.863 28 H 0.135 0.865 29 H 0.154 0.846 30 H 0.426 0.574 31 H 0.405 0.595 32 H 0.036 0.964 33 H 0.036 0.964 34 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.139 20.914 4.818 21.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.121 4.121 3 C -0.093 4.093 4 C -0.186 4.186 5 C 0.092 3.908 6 F -0.116 7.116 7 C -0.176 4.176 8 C 0.081 3.919 9 N -0.296 5.296 10 C 0.292 3.708 11 O -0.373 6.373 12 C 0.270 3.730 13 O -0.414 6.414 14 N -0.317 5.317 15 C 0.126 3.874 16 C -0.586 4.586 17 H 0.085 0.915 18 C -0.138 4.138 19 N -0.522 5.522 20 Si 0.734 3.266 21 H -0.203 1.203 22 H -0.209 1.209 23 H -0.196 1.196 24 H 0.094 0.906 25 H 0.092 0.908 26 H 0.089 0.911 27 H 0.155 0.845 28 H 0.153 0.847 29 H 0.172 0.828 30 H 0.265 0.735 31 H 0.240 0.760 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.014 20.610 4.775 21.369 hybrid contribution 0.751 -0.761 -0.487 1.175 sum 3.765 19.849 4.288 20.653 Atomic orbital electron populations 1.20780 0.90150 1.03683 1.02841 1.19804 0.96778 0.91424 1.04134 1.20668 0.92897 0.97334 0.98398 1.21108 0.94917 0.97062 1.05553 1.17449 0.76965 0.94009 1.02426 1.91508 1.28857 1.97386 1.93848 1.21270 0.93456 0.98814 1.04075 1.17272 0.90363 0.84925 0.99367 1.43221 1.26407 1.08571 1.51433 1.21005 0.86505 0.85266 0.78040 1.90740 1.20014 1.82751 1.43843 1.19605 0.86635 0.84453 0.82286 1.90741 1.20667 1.83205 1.46754 1.46443 1.22519 1.12860 1.49922 1.19374 0.91698 0.78016 0.98275 1.21197 1.04531 0.97142 1.35721 0.91516 1.24938 0.95020 0.98286 0.95600 1.69964 1.16124 1.21870 1.44258 0.86356 0.79517 0.80816 0.79934 1.20344 1.20932 1.19593 0.90642 0.90756 0.91087 0.84530 0.84665 0.82832 0.73514 0.76020 0.94621 0.94621 0.92284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.89 9.47 36.01 0.34 -0.55 16 2 C -0.12 -1.16 5.90 -104.41 -0.62 -1.78 16 3 C -0.07 -0.62 9.69 -39.62 -0.38 -1.01 16 4 C -0.17 -1.57 10.02 -39.47 -0.40 -1.97 16 5 C 0.11 1.34 7.30 -39.45 -0.29 1.06 16 6 F -0.14 -1.76 17.27 2.25 0.04 -1.72 16 7 C -0.16 -2.08 8.68 -39.31 -0.34 -2.42 16 8 C 0.18 2.18 6.28 -83.76 -0.53 1.65 16 9 N -0.65 -8.55 4.73 -10.31 -0.05 -8.60 16 10 C 0.51 8.32 7.73 -11.63 -0.09 8.23 16 11 O -0.50 -8.86 13.89 5.48 0.08 -8.79 16 12 C 0.49 9.51 7.89 -11.63 -0.09 9.42 16 13 O -0.53 -11.35 16.48 5.49 0.09 -11.25 16 14 N -0.67 -14.06 5.54 -61.94 -0.34 -14.40 16 15 C 0.25 6.25 5.43 -5.19 -0.03 6.23 16 16 C -0.55 -14.56 9.28 -34.44 -0.32 -14.88 16 17 H 0.07 1.69 7.60 -52.49 -0.40 1.29 16 18 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 19 N -0.89 -25.27 13.29 55.43 0.74 -24.53 16 20 Si 0.91 20.57 29.54 -169.99 -5.02 15.55 16 21 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 22 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 23 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 24 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.07 0.45 8.09 -51.93 -0.42 0.03 16 26 H 0.07 0.60 7.17 -51.93 -0.37 0.23 16 27 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16 28 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 29 H 0.15 2.29 6.20 -52.49 -0.33 1.96 16 30 H 0.43 4.91 7.32 -40.82 -0.30 4.61 16 31 H 0.40 7.91 7.79 -40.82 -0.32 7.60 16 32 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 308.18 15.07 4.64 4.64 Total: -1.00 -30.27 308.18 -6.04 -36.31 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -3.38 Total: 7.12 kcal Atomic # 6 Polarization: 8.50 SS G_CDS: -2.84 Total: 5.67 kcal Atomic # 7 Polarization: -47.87 SS G_CDS: 0.34 Total: -47.53 kcal Atomic # 8 Polarization: -20.21 SS G_CDS: 0.17 Total: -20.04 kcal Atomic # 9 Polarization: -1.76 SS G_CDS: 0.04 Total: -1.72 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -30.27 -6.04 -36.31 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427878025.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.870 kcal (2) G-P(sol) polarization free energy of solvation -30.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds