Wall clock time and date at job start Tue Mar 31 2020 01:06:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38125 * 120.01149 * 2 1 4 4 C 1.38237 * 120.10111 * 180.24781 * 3 2 1 5 5 C 1.38540 * 120.12433 * 359.45164 * 4 3 2 6 6 F 1.35103 * 119.99121 * 180.25243 * 5 4 3 7 7 C 1.38300 * 120.02673 * 0.26866 * 5 4 3 8 8 C 1.38915 * 119.89752 * 0.02562 * 7 5 4 9 9 N 1.39718 * 120.05951 * 180.02562 * 8 7 5 10 10 C 1.34771 * 120.00173 * 325.25640 * 9 8 7 11 11 O 1.21370 * 120.00050 * 4.51266 * 10 9 8 12 12 C 1.49352 * 120.00060 * 184.51302 * 10 9 8 13 13 O 1.21362 * 120.00118 * 359.97438 * 12 10 9 14 14 N 1.34776 * 120.00423 * 180.02562 * 12 10 9 15 15 C 1.46503 * 120.00259 * 179.97438 * 14 12 10 16 16 C 1.50705 * 109.46911 * 180.02562 * 15 14 12 17 17 H 1.07995 * 119.99946 * 359.97438 * 16 15 14 18 18 C 1.37874 * 119.99608 * 179.97438 * 16 15 14 19 19 N 1.31520 * 120.00319 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99722 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.46854 * 90.00536 * 20 18 16 22 22 H 1.48498 * 109.46901 * 210.00036 * 20 18 16 23 23 H 1.48500 * 109.47002 * 330.00320 * 20 18 16 24 24 H 1.08998 * 109.47442 * 270.29844 * 1 2 3 25 25 H 1.08996 * 109.46987 * 30.30366 * 1 2 3 26 26 H 1.09000 * 109.47040 * 150.29784 * 1 2 3 27 27 H 1.07999 * 119.95067 * 359.97438 * 3 2 1 28 28 H 1.07999 * 119.93859 * 179.71863 * 4 3 2 29 29 H 1.08002 * 120.05362 * 179.97438 * 7 5 4 30 30 H 0.96999 * 119.99488 * 145.26393 * 9 8 7 31 31 H 0.97001 * 119.99806 * 0.02562 * 14 12 10 32 32 H 1.09002 * 109.47106 * 300.00110 * 15 14 12 33 33 H 1.08994 * 109.46772 * 59.99832 * 15 14 12 34 34 H 0.97001 * 119.99914 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1961 0.0000 4 6 3.5802 1.1982 -0.0052 5 6 4.2774 0.0011 0.0011 6 9 5.6284 0.0064 0.0012 7 6 3.5910 -1.1996 0.0069 8 6 2.2019 -1.2029 0.0060 9 7 1.5050 -2.4139 0.0124 10 6 2.0005 -3.4801 -0.6463 11 8 3.0905 -3.4133 -1.1761 12 6 1.2085 -4.7439 -0.7244 13 8 0.1189 -4.8109 -0.1943 14 7 1.7043 -5.8104 -1.3827 15 6 0.9276 -7.0503 -1.4588 16 6 1.7000 -8.0795 -2.2431 17 1 2.6720 -7.8344 -2.6450 18 6 1.1657 -9.3340 -2.4475 19 7 -0.0182 -9.6323 -1.9585 20 14 2.1229 -10.6096 -3.4203 21 1 2.9787 -11.3967 -2.4965 22 1 1.1741 -11.5189 -4.1118 23 1 2.9765 -9.9272 -4.4257 24 1 -0.3634 0.0054 1.0276 25 1 -0.3633 0.8872 -0.5185 26 1 -0.3633 -0.8926 -0.5092 27 1 1.6572 2.1310 -0.0004 28 1 4.1177 2.1349 -0.0098 29 1 4.1341 -2.1331 0.0114 30 1 0.6644 -2.4871 0.4909 31 1 2.5757 -5.7573 -1.8055 32 1 0.7419 -7.4251 -0.4522 33 1 -0.0231 -6.8535 -1.9543 34 1 -0.3938 -10.5150 -2.1020 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427878025.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:10 Heat of formation + Delta-G solvation = -115.039905 kcal Electronic energy + Delta-G solvation = -20705.406126 eV Core-core repulsion = 17130.768491 eV Total energy + Delta-G solvation = -3574.637635 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.101 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.93238 -42.25334 -40.51043 -39.26181 -36.70615 -35.83773 -34.39653 -33.36213 -31.26346 -29.73472 -27.67454 -26.46446 -24.73226 -23.42502 -22.44865 -21.51885 -20.30923 -19.12252 -18.38924 -17.78028 -17.47888 -17.06642 -16.88045 -16.63644 -16.59077 -16.23267 -15.93587 -15.46021 -14.97162 -14.71087 -14.56719 -14.41081 -14.09549 -13.92833 -13.19740 -13.03499 -12.97052 -12.82422 -12.74235 -12.67726 -12.32772 -12.19435 -11.58977 -11.54645 -10.86220 -10.76513 -10.09439 -9.79017 -9.28453 -8.32984 -6.49117 -0.22003 0.12006 0.44518 1.18144 1.44021 1.44716 1.56664 1.99809 2.34241 2.51849 2.60240 3.02531 3.23711 3.39442 3.73547 3.84777 4.01852 4.15693 4.32945 4.66914 4.82556 4.93725 4.94854 4.96818 5.08570 5.15447 5.16707 5.21490 5.27024 5.35303 5.48896 5.75549 5.83400 5.87773 6.39729 6.54524 6.66377 6.94208 7.23801 8.78584 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.029525 B = 0.003369 C = 0.003071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.135935 B = 8308.880162 C = 9114.513220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.108 4.108 3 C -0.064 4.064 4 C -0.152 4.152 5 C 0.089 3.911 6 F -0.148 7.148 7 C -0.175 4.175 8 C 0.148 3.852 9 N -0.630 5.630 10 C 0.519 3.481 11 O -0.516 6.516 12 C 0.495 3.505 13 O -0.554 6.554 14 N -0.672 5.672 15 C 0.263 3.737 16 C -0.563 4.563 17 H 0.079 0.921 18 C 0.012 3.988 19 N -0.924 5.924 20 Si 0.982 3.018 21 H -0.271 1.271 22 H -0.280 1.280 23 H -0.260 1.260 24 H 0.092 0.908 25 H 0.098 0.902 26 H 0.057 0.943 27 H 0.180 0.820 28 H 0.164 0.836 29 H 0.128 0.872 30 H 0.433 0.567 31 H 0.413 0.587 32 H 0.007 0.993 33 H 0.008 0.992 34 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.389 23.228 4.495 23.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.111 4.111 3 C -0.082 4.082 4 C -0.171 4.171 5 C 0.069 3.931 6 F -0.127 7.127 7 C -0.196 4.196 8 C 0.054 3.946 9 N -0.278 5.278 10 C 0.301 3.699 11 O -0.391 6.391 12 C 0.275 3.725 13 O -0.433 6.433 14 N -0.322 5.322 15 C 0.141 3.859 16 C -0.601 4.601 17 H 0.097 0.903 18 C -0.189 4.189 19 N -0.562 5.562 20 Si 0.805 3.195 21 H -0.196 1.196 22 H -0.206 1.206 23 H -0.184 1.184 24 H 0.111 0.889 25 H 0.116 0.884 26 H 0.076 0.924 27 H 0.197 0.803 28 H 0.182 0.818 29 H 0.146 0.854 30 H 0.274 0.726 31 H 0.249 0.751 32 H 0.025 0.975 33 H 0.025 0.975 34 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.270 22.983 4.475 23.642 hybrid contribution 0.621 -1.311 -0.312 1.484 sum 3.891 21.672 4.163 22.409 Atomic orbital electron populations 1.20884 0.88325 1.04238 1.04133 1.20152 0.98089 0.90727 1.02112 1.21163 0.92514 0.98298 0.96225 1.21498 0.95558 0.96952 1.03090 1.17688 0.76725 0.94678 1.03980 1.91477 1.29621 1.97452 1.94110 1.21176 0.94120 0.98602 1.05695 1.17455 0.90149 0.85141 1.01844 1.43006 1.26395 1.08192 1.50202 1.20205 0.85923 0.84869 0.78870 1.90748 1.20402 1.82877 1.45080 1.20083 0.86436 0.85084 0.80883 1.90720 1.21684 1.83801 1.47142 1.46174 1.22640 1.12324 1.51039 1.18858 0.91157 0.79688 0.96157 1.21564 1.05090 0.97665 1.35801 0.90325 1.25941 0.95911 1.00555 0.96483 1.70093 1.17886 1.22654 1.45592 0.85199 0.78054 0.77784 0.78478 1.19602 1.20570 1.18442 0.88911 0.88361 0.92387 0.80316 0.81806 0.85364 0.72604 0.75086 0.97518 0.97456 0.91995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.40 9.47 71.24 0.67 -0.72 16 2 C -0.11 -1.81 5.90 -19.73 -0.12 -1.93 16 3 C -0.06 -0.80 9.69 22.24 0.22 -0.58 16 4 C -0.15 -2.37 10.02 22.34 0.22 -2.14 16 5 C 0.09 2.07 7.30 22.36 0.16 2.23 16 6 F -0.15 -3.78 17.27 44.97 0.78 -3.00 16 7 C -0.17 -4.72 8.68 22.45 0.19 -4.53 16 8 C 0.15 3.55 6.28 38.21 0.24 3.79 16 9 N -0.63 -16.52 4.73 -304.87 -1.44 -17.96 16 10 C 0.52 17.31 7.73 87.24 0.67 17.99 16 11 O -0.52 -18.77 13.89 -3.31 -0.05 -18.82 16 12 C 0.50 19.73 7.89 87.24 0.69 20.42 16 13 O -0.55 -24.19 16.48 -3.28 -0.05 -24.24 16 14 N -0.67 -29.24 5.54 -468.23 -2.59 -31.84 16 15 C 0.26 13.93 5.43 85.63 0.46 14.40 16 16 C -0.56 -30.45 9.28 25.60 0.24 -30.21 16 17 H 0.08 3.97 7.60 -2.91 -0.02 3.94 16 18 C 0.01 0.63 5.46 84.65 0.46 1.10 16 19 N -0.92 -53.88 13.29 21.45 0.28 -53.60 16 20 Si 0.98 42.09 29.54 68.60 2.03 44.12 16 21 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 22 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 23 H -0.26 -10.63 7.11 99.48 0.71 -9.93 16 24 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 25 H 0.10 0.73 8.09 -2.39 -0.02 0.71 16 26 H 0.06 0.86 7.17 -2.39 -0.02 0.85 16 27 H 0.18 0.79 8.06 -2.91 -0.02 0.77 16 28 H 0.16 1.61 8.06 -2.91 -0.02 1.59 16 29 H 0.13 4.06 6.20 -2.91 -0.02 4.04 16 30 H 0.43 9.81 7.32 -92.71 -0.68 9.13 16 31 H 0.41 16.56 7.79 -92.71 -0.72 15.84 16 32 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 33 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 34 H 0.27 14.74 8.31 -92.71 -0.77 13.97 16 Total: -1.00 -67.50 308.18 2.84 -64.66 By element: Atomic # 1 Polarization: 21.10 SS G_CDS: -0.23 Total: 20.87 kcal Atomic # 6 Polarization: 15.69 SS G_CDS: 4.12 Total: 19.81 kcal Atomic # 7 Polarization: -99.65 SS G_CDS: -3.75 Total: -103.40 kcal Atomic # 8 Polarization: -42.96 SS G_CDS: -0.10 Total: -43.06 kcal Atomic # 9 Polarization: -3.78 SS G_CDS: 0.78 Total: -3.00 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.12 kcal Total: -67.50 2.84 -64.66 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427878025.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.383 kcal (2) G-P(sol) polarization free energy of solvation -67.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds