Wall clock time and date at job start Tue Mar 31 2020 01:40:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50696 * 109.47443 * 2 1 4 4 N 1.30939 * 122.90472 * 90.02078 * 3 2 1 5 5 C 1.29439 * 117.36440 * 179.97438 * 4 3 2 6 6 S 1.70951 * 110.38867 * 0.02562 * 5 4 3 7 7 C 1.35668 * 122.90422 * 269.98762 * 3 2 1 8 8 C 1.46681 * 126.12834 * 0.02562 * 7 3 2 9 9 O 1.21687 * 120.00474 * 0.79543 * 8 7 3 10 10 N 1.34782 * 119.99966 * 180.79160 * 8 7 3 11 11 C 1.46497 * 119.99889 * 185.11614 * 10 8 7 12 12 C 1.53000 * 109.47001 * 184.37180 * 11 10 8 13 13 C 1.50706 * 115.54758 * 64.93085 * 12 11 10 14 14 H 1.07996 * 120.00066 * 266.87969 * 13 12 11 15 15 C 1.37879 * 119.99813 * 86.88394 * 13 12 11 16 16 N 1.31508 * 119.99695 * 180.96509 * 15 13 12 17 17 Si 1.86795 * 119.99900 * 0.96691 * 15 13 12 18 18 H 1.48502 * 109.47131 * 84.75018 * 17 15 13 19 19 H 1.48505 * 109.46950 * 204.74521 * 17 15 13 20 20 H 1.48495 * 109.47624 * 324.74513 * 17 15 13 21 21 C 1.52999 * 117.50316 * 279.26129 * 12 11 10 22 22 C 1.53001 * 117.50217 * 210.60045 * 12 11 10 23 23 H 1.09001 * 109.47186 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47212 * 300.00659 * 1 2 3 25 25 H 1.09007 * 109.46825 * 60.00095 * 1 2 3 26 26 H 1.09002 * 109.47103 * 240.00051 * 2 1 3 27 27 H 1.08994 * 109.47071 * 119.99846 * 2 1 3 28 28 H 1.07993 * 124.80387 * 179.73460 * 5 4 3 29 29 H 0.96994 * 119.99603 * 5.11743 * 10 8 7 30 30 H 1.08992 * 109.47198 * 304.37458 * 11 10 8 31 31 H 1.09008 * 109.47203 * 64.37745 * 11 10 8 32 32 H 0.96998 * 120.00063 * 179.97438 * 16 15 13 33 33 H 1.08998 * 117.49756 * 359.97438 * 21 12 11 34 34 H 1.08995 * 117.50076 * 145.01829 * 21 12 11 35 35 H 1.08999 * 117.50125 * 214.98036 * 22 12 11 36 36 H 1.08999 * 117.49604 * 359.97438 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2699 2.0912 1.0993 5 6 2.6999 3.3057 0.9744 6 16 2.8452 3.7190 -0.6781 7 6 2.2783 2.1155 -1.1390 8 6 2.1031 1.6207 -2.5087 9 8 1.6883 0.4928 -2.6999 10 7 2.4016 2.4154 -3.5556 11 6 2.1217 1.9640 -4.9210 12 6 2.6508 2.9969 -5.9180 13 6 4.1469 3.1779 -5.9341 14 1 4.6047 3.9437 -5.3256 15 6 4.9310 2.3657 -6.7256 16 7 6.2381 2.5111 -6.7252 17 14 4.1369 1.0591 -7.7986 18 1 3.7090 1.6671 -9.0841 19 1 5.1164 -0.0247 -8.0655 20 1 2.9540 0.4961 -7.0994 21 6 1.7870 4.2321 -6.1811 22 6 1.9076 3.1407 -7.2476 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8901 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 2.9294 3.9661 1.7974 29 1 2.8016 3.2861 -3.4050 30 1 2.6126 1.0065 -5.0949 31 1 1.0457 1.8500 -5.0527 32 1 6.7898 1.9395 -7.2818 33 1 0.8416 4.3086 -5.6441 34 1 2.3008 5.1754 -6.3661 35 1 2.5006 3.3666 -8.1339 36 1 1.0419 2.4992 -7.4122 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431174699.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:40:12 Heat of formation + Delta-G solvation = 27.180833 kcal Electronic energy + Delta-G solvation = -19560.384569 eV Core-core repulsion = 16558.127263 eV Total energy + Delta-G solvation = -3002.257305 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.30033 -38.84808 -37.07766 -33.76880 -33.24596 -32.17628 -30.00325 -27.06731 -25.93366 -25.01685 -23.19661 -21.87364 -21.22116 -19.67121 -18.79659 -18.26254 -16.91016 -16.13206 -15.60287 -15.34026 -15.00123 -14.54468 -14.24296 -14.11294 -13.88402 -13.57398 -13.10609 -12.85261 -12.55301 -12.38318 -12.13158 -11.88732 -11.27393 -11.20212 -10.86810 -10.77601 -10.53226 -10.24886 -9.96709 -9.76460 -9.54171 -9.52060 -9.25518 -8.90086 -8.72916 -8.62961 -8.40483 -6.19811 -4.25153 0.27763 1.20216 1.58414 2.50259 3.25595 3.35969 3.38000 3.42123 3.53496 4.10164 4.35947 4.79273 4.93046 4.99148 5.07214 5.23534 5.44046 5.50575 5.54830 5.61334 5.94498 5.98999 5.99707 6.03541 6.13089 6.27054 6.35317 6.36730 6.45017 6.63937 6.89528 6.97666 7.01973 7.55961 7.62028 7.95187 8.35796 8.52324 8.79636 9.42809 10.91440 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.021511 B = 0.005173 C = 0.004889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.330260 B = 5411.781503 C = 5725.491067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.059 4.059 3 C 0.137 3.863 4 N -0.474 5.474 5 C 0.022 3.978 6 S 0.172 5.828 7 C -0.279 4.279 8 C 0.587 3.413 9 O -0.533 6.533 10 N -0.694 5.694 11 C 0.156 3.844 12 C -0.019 4.019 13 C -0.493 4.493 14 H 0.078 0.922 15 C 0.081 3.919 16 N -0.893 5.893 17 Si 0.880 3.120 18 H -0.276 1.276 19 H -0.294 1.294 20 H -0.259 1.259 21 C -0.179 4.179 22 C -0.192 4.192 23 H 0.061 0.939 24 H 0.050 0.950 25 H 0.057 0.943 26 H 0.106 0.894 27 H 0.075 0.925 28 H 0.203 0.797 29 H 0.402 0.598 30 H 0.071 0.929 31 H 0.046 0.954 32 H 0.266 0.734 33 H 0.073 0.927 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.956 1.889 12.067 15.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.099 4.099 3 C -0.001 4.001 4 N -0.188 5.188 5 C -0.273 4.273 6 S 0.427 5.573 7 C -0.404 4.404 8 C 0.371 3.629 9 O -0.413 6.413 10 N -0.343 5.343 11 C 0.032 3.968 12 C -0.020 4.020 13 C -0.530 4.530 14 H 0.096 0.904 15 C -0.123 4.123 16 N -0.530 5.530 17 Si 0.708 3.292 18 H -0.202 1.202 19 H -0.221 1.221 20 H -0.184 1.184 21 C -0.216 4.216 22 C -0.230 4.230 23 H 0.080 0.920 24 H 0.069 0.931 25 H 0.076 0.924 26 H 0.124 0.876 27 H 0.094 0.906 28 H 0.220 0.780 29 H 0.236 0.764 30 H 0.089 0.911 31 H 0.064 0.936 32 H 0.076 0.924 33 H 0.091 0.909 34 H 0.107 0.893 35 H 0.110 0.890 36 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -8.801 1.801 11.846 14.867 hybrid contribution -0.209 -0.896 -0.496 1.046 sum -9.010 0.904 11.350 14.520 Atomic orbital electron populations 1.21586 0.94067 1.01947 1.01671 1.20396 0.96581 0.88453 1.04440 1.20685 0.96205 0.98262 0.84963 1.66099 1.15133 1.06154 1.31404 1.28657 1.01774 0.96197 1.00668 1.84136 1.58246 1.12180 1.02709 1.25694 1.16335 0.98760 0.99576 1.16687 0.78644 0.85175 0.82371 1.90748 1.47528 1.18129 1.84921 1.45772 1.61863 1.20372 1.06264 1.21238 0.97525 0.98644 0.79347 1.19636 0.94946 0.94250 0.93162 1.20164 0.86214 1.19147 1.27442 0.90377 1.24967 0.94538 0.96565 0.96189 1.69874 1.04064 1.39337 1.39691 0.86860 0.79539 0.81482 0.81303 1.20168 1.22079 1.18368 1.22859 1.00519 0.94538 1.03679 1.22971 1.02294 1.03222 0.94519 0.91999 0.93129 0.92358 0.87585 0.90613 0.78001 0.76359 0.91068 0.93558 0.92399 0.90851 0.89275 0.88975 0.90660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.69 9.89 37.16 0.37 -1.33 16 2 C -0.06 -0.83 5.74 -27.88 -0.16 -0.99 16 3 C 0.14 2.05 6.04 -83.89 -0.51 1.54 16 4 N -0.47 -6.49 10.50 -11.53 -0.12 -6.62 16 5 C 0.02 0.24 12.22 51.75 0.63 0.87 16 6 S 0.17 2.06 22.36 -107.50 -2.40 -0.34 16 7 C -0.28 -4.38 6.48 -37.09 -0.24 -4.62 16 8 C 0.59 10.84 7.77 -12.85 -0.10 10.74 16 9 O -0.53 -10.92 14.26 5.20 0.07 -10.85 16 10 N -0.69 -13.04 5.45 -61.62 -0.34 -13.38 16 11 C 0.16 3.21 5.23 -4.04 -0.02 3.19 16 12 C -0.02 -0.40 0.85 -155.66 -0.13 -0.53 16 13 C -0.49 -12.76 9.29 -34.44 -0.32 -13.08 16 14 H 0.08 2.18 8.06 -52.49 -0.42 1.76 16 15 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 16 N -0.89 -26.17 13.96 55.43 0.77 -25.40 16 17 Si 0.88 21.19 24.76 -169.99 -4.21 16.98 16 18 H -0.28 -6.44 7.00 56.52 0.40 -6.04 16 19 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 20 H -0.26 -6.01 5.99 56.52 0.34 -5.67 16 21 C -0.18 -3.31 9.96 -26.69 -0.27 -3.58 16 22 C -0.19 -3.83 7.59 -26.69 -0.20 -4.04 16 23 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.06 0.82 8.14 -51.92 -0.42 0.39 16 26 H 0.11 1.68 6.03 -51.93 -0.31 1.36 16 27 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 28 H 0.20 1.33 8.06 -52.49 -0.42 0.90 16 29 H 0.40 7.09 7.64 -40.82 -0.31 6.78 16 30 H 0.07 1.64 6.75 -51.93 -0.35 1.29 16 31 H 0.05 0.89 8.09 -51.92 -0.42 0.47 16 32 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 33 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.09 1.65 8.14 -51.93 -0.42 1.23 16 35 H 0.09 1.94 7.06 -51.93 -0.37 1.57 16 36 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 LS Contribution 314.92 15.07 4.75 4.75 Total: -1.00 -30.30 314.92 -7.29 -37.59 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -4.77 Total: 6.96 kcal Atomic # 6 Polarization: -8.65 SS G_CDS: -1.05 Total: -9.70 kcal Atomic # 7 Polarization: -45.71 SS G_CDS: 0.32 Total: -45.39 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: 0.07 Total: -10.85 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.21 Total: 16.98 kcal Atomic # 16 Polarization: 2.06 SS G_CDS: -2.40 Total: -0.34 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.30 -7.29 -37.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431174699.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.775 kcal (2) G-P(sol) polarization free energy of solvation -30.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds