Wall clock time and date at job start Tue Mar 31 2020 01:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50696 * 109.47443 * 2 1 4 4 N 1.30939 * 122.90472 * 90.02078 * 3 2 1 5 5 C 1.29439 * 117.36440 * 179.97438 * 4 3 2 6 6 S 1.70951 * 110.38867 * 0.02562 * 5 4 3 7 7 C 1.35668 * 122.90422 * 269.98762 * 3 2 1 8 8 C 1.46681 * 126.12834 * 0.02562 * 7 3 2 9 9 O 1.21687 * 120.00474 * 0.79543 * 8 7 3 10 10 N 1.34782 * 119.99966 * 180.79160 * 8 7 3 11 11 C 1.46497 * 119.99889 * 185.11614 * 10 8 7 12 12 C 1.53000 * 109.47001 * 184.37180 * 11 10 8 13 13 C 1.50706 * 115.54758 * 64.93085 * 12 11 10 14 14 H 1.07996 * 120.00066 * 266.87969 * 13 12 11 15 15 C 1.37879 * 119.99813 * 86.88394 * 13 12 11 16 16 N 1.31508 * 119.99695 * 180.96509 * 15 13 12 17 17 Si 1.86795 * 119.99900 * 0.96691 * 15 13 12 18 18 H 1.48502 * 109.47131 * 84.75018 * 17 15 13 19 19 H 1.48505 * 109.46950 * 204.74521 * 17 15 13 20 20 H 1.48495 * 109.47624 * 324.74513 * 17 15 13 21 21 C 1.52999 * 117.50316 * 279.26129 * 12 11 10 22 22 C 1.53001 * 117.50217 * 210.60045 * 12 11 10 23 23 H 1.09001 * 109.47186 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47212 * 300.00659 * 1 2 3 25 25 H 1.09007 * 109.46825 * 60.00095 * 1 2 3 26 26 H 1.09002 * 109.47103 * 240.00051 * 2 1 3 27 27 H 1.08994 * 109.47071 * 119.99846 * 2 1 3 28 28 H 1.07993 * 124.80387 * 179.73460 * 5 4 3 29 29 H 0.96994 * 119.99603 * 5.11743 * 10 8 7 30 30 H 1.08992 * 109.47198 * 304.37458 * 11 10 8 31 31 H 1.09008 * 109.47203 * 64.37745 * 11 10 8 32 32 H 0.96998 * 120.00063 * 179.97438 * 16 15 13 33 33 H 1.08998 * 117.49756 * 359.97438 * 21 12 11 34 34 H 1.08995 * 117.50076 * 145.01829 * 21 12 11 35 35 H 1.08999 * 117.50125 * 214.98036 * 22 12 11 36 36 H 1.08999 * 117.49604 * 359.97438 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2699 2.0912 1.0993 5 6 2.6999 3.3057 0.9744 6 16 2.8452 3.7190 -0.6781 7 6 2.2783 2.1155 -1.1390 8 6 2.1031 1.6207 -2.5087 9 8 1.6883 0.4928 -2.6999 10 7 2.4016 2.4154 -3.5556 11 6 2.1217 1.9640 -4.9210 12 6 2.6508 2.9969 -5.9180 13 6 4.1469 3.1779 -5.9341 14 1 4.6047 3.9437 -5.3256 15 6 4.9310 2.3657 -6.7256 16 7 6.2381 2.5111 -6.7252 17 14 4.1369 1.0591 -7.7986 18 1 3.7090 1.6671 -9.0841 19 1 5.1164 -0.0247 -8.0655 20 1 2.9540 0.4961 -7.0994 21 6 1.7870 4.2321 -6.1811 22 6 1.9076 3.1407 -7.2476 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8901 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 2.9294 3.9661 1.7974 29 1 2.8016 3.2861 -3.4050 30 1 2.6126 1.0065 -5.0949 31 1 1.0457 1.8500 -5.0527 32 1 6.7898 1.9395 -7.2818 33 1 0.8416 4.3086 -5.6441 34 1 2.3008 5.1754 -6.3661 35 1 2.5006 3.3666 -8.1339 36 1 1.0419 2.4992 -7.4122 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431174699.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:40:11 Heat of formation + Delta-G solvation = 6.250969 kcal Electronic energy + Delta-G solvation = -19561.292156 eV Core-core repulsion = 16558.127263 eV Total energy + Delta-G solvation = -3003.164892 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.46610 -40.20845 -38.68638 -35.20985 -34.38339 -34.22739 -31.17679 -28.55865 -27.50629 -26.49429 -24.21610 -23.41072 -22.56264 -21.28350 -20.25204 -19.32644 -18.52065 -17.65156 -16.98220 -16.89988 -16.50649 -15.84856 -15.54620 -15.37992 -15.07535 -14.79983 -14.77443 -14.43899 -14.28082 -13.79056 -13.38977 -13.10753 -12.92963 -12.66646 -12.32068 -12.15861 -12.00798 -11.87947 -11.60997 -11.18206 -11.00603 -10.78455 -10.67818 -10.62391 -10.37073 -10.03121 -9.82823 -8.30954 -6.37658 -0.77091 0.19567 0.58903 1.33562 1.39180 1.40450 1.48114 2.06351 2.14384 2.35537 3.04119 3.14489 3.23264 3.76614 3.95838 4.02685 4.11201 4.34141 4.38723 4.39948 4.46349 4.48416 4.58626 4.79482 4.86524 4.96271 5.02635 5.08487 5.23133 5.26983 5.30956 5.45494 5.49874 5.67941 6.26459 6.45358 6.58867 6.71017 7.09884 7.33153 8.83584 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.021511 B = 0.005173 C = 0.004889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.330260 B = 5411.781503 C = 5725.491067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.062 4.062 3 C 0.141 3.859 4 N -0.496 5.496 5 C 0.049 3.951 6 S 0.201 5.799 7 C -0.323 4.323 8 C 0.586 3.414 9 O -0.562 6.562 10 N -0.697 5.697 11 C 0.165 3.835 12 C -0.045 4.045 13 C -0.480 4.480 14 H 0.045 0.955 15 C 0.026 3.974 16 N -0.943 5.943 17 Si 0.930 3.070 18 H -0.260 1.260 19 H -0.305 1.305 20 H -0.245 1.245 21 C -0.151 4.151 22 C -0.190 4.190 23 H 0.076 0.924 24 H 0.060 0.940 25 H 0.038 0.962 26 H 0.082 0.918 27 H 0.089 0.911 28 H 0.251 0.749 29 H 0.405 0.595 30 H 0.041 0.959 31 H 0.065 0.935 32 H 0.264 0.736 33 H 0.105 0.895 34 H 0.087 0.913 35 H 0.079 0.921 36 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.906 2.740 13.336 17.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.102 4.102 3 C 0.002 3.998 4 N -0.210 5.210 5 C -0.245 4.245 6 S 0.457 5.543 7 C -0.447 4.447 8 C 0.372 3.628 9 O -0.444 6.444 10 N -0.346 5.346 11 C 0.041 3.959 12 C -0.047 4.047 13 C -0.517 4.517 14 H 0.063 0.937 15 C -0.172 4.172 16 N -0.583 5.583 17 Si 0.755 3.245 18 H -0.185 1.185 19 H -0.232 1.232 20 H -0.169 1.169 21 C -0.188 4.188 22 C -0.228 4.228 23 H 0.095 0.905 24 H 0.079 0.921 25 H 0.058 0.942 26 H 0.101 0.899 27 H 0.108 0.892 28 H 0.266 0.734 29 H 0.241 0.759 30 H 0.059 0.941 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.123 0.877 34 H 0.106 0.894 35 H 0.098 0.902 36 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -10.773 2.686 13.117 17.185 hybrid contribution 0.435 -1.038 -0.736 1.344 sum -10.339 1.648 12.381 16.214 Atomic orbital electron populations 1.21520 0.92954 1.02831 1.01142 1.20400 0.97540 0.88350 1.03889 1.20870 0.95132 0.98562 0.85258 1.66182 1.16881 1.07326 1.30630 1.29516 0.98102 0.95521 1.01354 1.84029 1.57473 1.09545 1.03204 1.25450 1.19646 1.01430 0.98205 1.17023 0.77713 0.84692 0.83340 1.90721 1.48706 1.19249 1.85676 1.45741 1.62332 1.20670 1.05871 1.20984 0.98090 0.96810 0.80013 1.19475 0.92742 0.97176 0.95258 1.20348 0.88847 1.17147 1.25406 0.93706 1.25714 0.94803 0.98783 0.97906 1.70009 1.05615 1.41074 1.41582 0.86048 0.78923 0.79017 0.80464 1.18535 1.23214 1.16852 1.22899 1.00662 0.93189 1.02063 1.23037 1.02415 1.04102 0.93268 0.90486 0.92098 0.94231 0.89917 0.89239 0.73359 0.75908 0.94092 0.91704 0.92686 0.87705 0.89427 0.90205 0.88091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.07 9.89 71.98 0.71 -2.36 16 2 C -0.06 -1.71 5.74 29.85 0.17 -1.54 16 3 C 0.14 4.08 6.04 42.09 0.25 4.34 16 4 N -0.50 -12.39 10.50 -190.40 -2.00 -14.39 16 5 C 0.05 0.90 12.22 130.60 1.60 2.49 16 6 S 0.20 4.42 22.36 -56.49 -1.26 3.15 16 7 C -0.32 -9.94 6.48 23.88 0.15 -9.79 16 8 C 0.59 21.76 7.77 86.45 0.67 22.44 16 9 O -0.56 -23.46 14.26 -4.31 -0.06 -23.52 16 10 N -0.70 -26.05 5.45 -467.08 -2.55 -28.60 16 11 C 0.16 6.67 5.23 86.38 0.45 7.12 16 12 C -0.05 -1.90 0.85 -52.93 -0.04 -1.95 16 13 C -0.48 -25.23 9.29 25.60 0.24 -24.99 16 14 H 0.04 2.59 8.06 -2.91 -0.02 2.57 16 15 C 0.03 1.46 5.47 84.66 0.46 1.93 16 16 N -0.94 -57.18 13.96 21.45 0.30 -56.88 16 17 Si 0.93 43.86 24.76 68.60 1.70 45.56 16 18 H -0.26 -11.54 7.00 99.48 0.70 -10.84 16 19 H -0.30 -14.79 7.11 99.48 0.71 -14.08 16 20 H -0.24 -10.90 5.99 99.48 0.60 -10.30 16 21 C -0.15 -5.18 9.96 30.62 0.30 -4.88 16 22 C -0.19 -7.10 7.59 30.62 0.23 -6.86 16 23 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 24 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 25 H 0.04 1.09 8.14 -2.38 -0.02 1.07 16 26 H 0.08 2.69 6.03 -2.39 -0.01 2.67 16 27 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 28 H 0.25 1.95 8.06 -2.91 -0.02 1.92 16 29 H 0.41 14.22 7.64 -92.71 -0.71 13.51 16 30 H 0.04 1.89 6.75 -2.39 -0.02 1.87 16 31 H 0.06 2.37 8.09 -2.38 -0.02 2.35 16 32 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 33 H 0.10 2.99 8.14 -2.39 -0.02 2.97 16 34 H 0.09 3.05 8.14 -2.39 -0.02 3.03 16 35 H 0.08 3.19 7.06 -2.39 -0.02 3.17 16 36 H 0.10 3.26 8.14 -2.39 -0.02 3.24 16 Total: -1.00 -67.69 314.92 1.61 -66.08 By element: Atomic # 1 Polarization: 22.38 SS G_CDS: 0.27 Total: 22.66 kcal Atomic # 6 Polarization: -19.27 SS G_CDS: 5.21 Total: -14.06 kcal Atomic # 7 Polarization: -95.62 SS G_CDS: -4.24 Total: -99.87 kcal Atomic # 8 Polarization: -23.46 SS G_CDS: -0.06 Total: -23.52 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 1.70 Total: 45.56 kcal Atomic # 16 Polarization: 4.42 SS G_CDS: -1.26 Total: 3.15 kcal Total: -67.69 1.61 -66.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431174699.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.330 kcal (2) G-P(sol) polarization free energy of solvation -67.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds