Wall clock time and date at job start Tue Mar 31 2020 01:37:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50700 * 109.46932 * 2 1 4 4 C 1.38675 * 120.78958 * 269.97721 * 3 2 1 5 5 C 1.38184 * 119.16617 * 180.02562 * 4 3 2 6 6 N 1.31882 * 120.76302 * 0.02562 * 5 4 3 7 7 C 1.31861 * 121.72456 * 359.68124 * 6 5 4 8 8 C 1.50704 * 119.61576 * 180.29006 * 7 6 5 9 9 N 1.46496 * 109.46965 * 275.28890 * 8 7 6 10 10 C 1.34784 * 119.99793 * 180.02562 * 9 8 7 11 11 O 1.21280 * 120.00003 * 359.97438 * 10 9 8 12 12 C 1.50696 * 119.99793 * 179.97438 * 10 9 8 13 13 S 1.81003 * 109.47010 * 179.97438 * 12 10 9 14 14 C 1.76198 * 99.99928 * 179.97438 * 13 12 10 15 15 H 1.08003 * 120.00378 * 0.02562 * 14 13 12 16 16 C 1.38802 * 120.00002 * 179.97438 * 14 13 12 17 17 N 1.31625 * 119.99979 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00223 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46898 * 90.00199 * 18 16 14 20 20 H 1.48496 * 109.47352 * 210.00293 * 18 16 14 21 21 H 1.48502 * 109.46968 * 330.00482 * 18 16 14 22 22 C 1.38221 * 120.76518 * 0.58353 * 7 6 5 23 23 H 1.08997 * 109.47117 * 299.99784 * 1 2 3 24 24 H 1.08995 * 109.47537 * 60.00529 * 1 2 3 25 25 H 1.09009 * 109.46870 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47117 * 240.00216 * 2 1 3 27 27 H 1.09004 * 109.47289 * 119.99439 * 2 1 3 28 28 H 1.08006 * 120.41367 * 0.04222 * 4 3 2 29 29 H 1.07993 * 119.61608 * 179.97438 * 5 4 3 30 30 H 1.09000 * 109.47059 * 35.29031 * 8 7 6 31 31 H 1.09000 * 109.46801 * 155.28956 * 8 7 6 32 32 H 0.96997 * 120.00400 * 359.97438 * 9 8 7 33 33 H 1.09000 * 109.47385 * 299.99585 * 12 10 9 34 34 H 1.09004 * 109.47718 * 59.99815 * 12 10 9 35 35 H 0.96997 * 120.00270 * 180.02562 * 17 16 14 36 36 H 1.08002 * 120.42313 * 179.73507 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2693 2.0899 -1.1913 5 6 2.7302 3.3921 -1.1521 6 7 2.9448 3.9973 -0.0002 7 6 2.7250 3.3941 1.1515 8 6 2.9802 4.1331 2.4399 9 7 4.3959 4.0156 2.7980 10 6 4.8579 4.6013 3.9206 11 8 4.1017 5.2260 4.6340 12 6 6.3140 4.4799 4.2893 13 16 6.6206 5.3676 5.8366 14 6 8.3467 5.0679 6.0245 15 1 8.8765 4.4826 5.2875 16 6 9.0258 5.5850 7.1190 17 7 8.3802 6.2987 8.0169 18 14 10.8556 5.2667 7.3186 19 1 11.6220 6.3467 6.6467 20 1 11.1990 5.2409 8.7630 21 1 11.2005 3.9593 6.7044 22 6 2.2690 2.0899 1.1909 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0278 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8901 28 1 2.0956 1.5995 -2.1378 29 1 2.9176 3.9198 -2.0755 30 1 2.7238 5.1848 2.3125 31 1 2.3680 3.7033 3.2327 32 1 5.0006 3.5157 2.2277 33 1 6.5701 3.4281 4.4166 34 1 6.9266 4.9097 3.4968 35 1 8.8548 6.6604 8.7817 36 1 2.0949 1.5997 2.1374 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000437741873.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:44 Heat of formation + Delta-G solvation = -17.172807 kcal Electronic energy + Delta-G solvation = -18118.585318 eV Core-core repulsion = 15114.404694 eV Total energy + Delta-G solvation = -3004.180623 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.72660 -38.99229 -35.60950 -34.55216 -32.40823 -31.82513 -30.72150 -29.38641 -26.37102 -25.41268 -24.72353 -23.16189 -20.97974 -20.37745 -17.89805 -17.04094 -16.78129 -16.29970 -16.05883 -15.32825 -15.05399 -14.78444 -14.50891 -14.29745 -13.99469 -13.74433 -13.39174 -13.03896 -12.92591 -12.82343 -12.53604 -12.05615 -11.91879 -11.72042 -11.37612 -11.04461 -11.00280 -10.74955 -9.88655 -9.80887 -9.73618 -9.61769 -9.18746 -9.05005 -8.88168 -8.21065 -6.47390 -6.19486 -3.89764 0.71865 0.92483 3.02272 3.12387 3.24124 3.27843 3.31886 3.49053 3.84515 4.00779 4.15596 4.22572 4.30932 4.70723 4.71232 4.81639 4.85786 4.98946 5.13862 5.15615 5.27052 5.34050 5.38084 5.44625 5.49466 5.61269 5.71909 5.79667 5.84598 5.93360 5.98463 6.17474 6.36806 6.57933 7.61810 7.68978 7.73009 8.37511 8.62297 9.25789 10.87971 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.033533 B = 0.002760 C = 0.002734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.798369 B =10142.257437 C =10240.524747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.088 4.088 3 C -0.040 4.040 4 C -0.170 4.170 5 C 0.102 3.898 6 N -0.472 5.472 7 C 0.116 3.884 8 C 0.173 3.827 9 N -0.731 5.731 10 C 0.534 3.466 11 O -0.517 6.517 12 C -0.152 4.152 13 S -0.059 6.059 14 C -0.535 4.535 15 H 0.072 0.928 16 C 0.073 3.927 17 N -0.868 5.868 18 Si 0.919 3.081 19 H -0.277 1.277 20 H -0.282 1.282 21 H -0.272 1.272 22 C -0.153 4.153 23 H 0.058 0.942 24 H 0.056 0.944 25 H 0.062 0.938 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.134 0.866 29 H 0.157 0.843 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.399 0.601 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.268 0.732 36 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.659 -13.029 -19.564 27.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.125 4.125 3 C -0.048 4.048 4 C -0.190 4.190 5 C -0.055 4.055 6 N -0.182 5.182 7 C -0.021 4.021 8 C 0.049 3.951 9 N -0.386 5.386 10 C 0.320 3.680 11 O -0.391 6.391 12 C -0.303 4.303 13 S 0.167 5.833 14 C -0.683 4.683 15 H 0.091 0.909 16 C -0.136 4.136 17 N -0.503 5.503 18 Si 0.745 3.255 19 H -0.203 1.203 20 H -0.208 1.208 21 H -0.197 1.197 22 C -0.173 4.173 23 H 0.077 0.923 24 H 0.075 0.925 25 H 0.081 0.919 26 H 0.095 0.905 27 H 0.097 0.903 28 H 0.152 0.848 29 H 0.174 0.826 30 H 0.103 0.897 31 H 0.101 0.899 32 H 0.232 0.768 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.078 0.922 36 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -14.622 -11.008 -18.173 25.792 hybrid contribution 2.024 -2.024 -1.135 3.079 sum -12.598 -13.031 -19.308 26.483 Atomic orbital electron populations 1.21745 0.94091 1.02192 1.02450 1.20603 0.96616 0.91705 1.03583 1.20357 0.95004 0.96531 0.92903 1.22080 1.01760 0.96477 0.98687 1.22784 0.94563 0.92076 0.96087 1.67539 1.14607 1.38008 0.98022 1.21269 0.95622 0.91569 0.93688 1.20037 0.83676 1.00805 0.90590 1.45926 1.09346 1.57044 1.26327 1.20311 0.90100 0.77881 0.79690 1.90706 1.58216 1.39847 1.50289 1.23524 0.94143 1.05917 1.06700 1.85390 1.10771 1.67153 1.19964 1.22871 0.93935 1.39341 1.12183 0.90935 1.24993 0.99255 0.94569 0.94799 1.70016 1.36361 1.32564 1.11365 0.86165 0.83052 0.78740 0.77519 1.20273 1.20764 1.19715 1.21948 1.01023 0.95236 0.99099 0.92272 0.92460 0.91929 0.90473 0.90309 0.84823 0.82554 0.89723 0.89941 0.76791 0.89205 0.89144 0.92194 0.84492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 9.89 37.16 0.37 -0.38 16 2 C -0.09 -0.49 6.11 -27.88 -0.17 -0.66 16 3 C -0.04 -0.31 5.17 -104.32 -0.54 -0.85 16 4 C -0.17 -1.25 9.82 -39.44 -0.39 -1.64 16 5 C 0.10 0.91 11.18 -17.55 -0.20 0.71 16 6 N -0.47 -5.55 10.27 -9.47 -0.10 -5.65 16 7 C 0.12 1.30 6.15 -82.58 -0.51 0.80 16 8 C 0.17 2.25 5.98 -5.19 -0.03 2.22 16 9 N -0.73 -10.58 5.55 -61.47 -0.34 -10.92 16 10 C 0.53 10.27 7.85 -10.98 -0.09 10.18 16 11 O -0.52 -11.92 15.86 5.56 0.09 -11.83 16 12 C -0.15 -3.14 6.16 36.00 0.22 -2.92 16 13 S -0.06 -1.63 20.57 -107.50 -2.21 -3.85 16 14 C -0.54 -15.40 9.50 30.94 0.29 -15.11 16 15 H 0.07 1.98 7.80 -52.48 -0.41 1.57 16 16 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 17 N -0.87 -26.38 13.22 55.49 0.73 -25.64 16 18 Si 0.92 21.58 29.55 -169.99 -5.02 16.56 16 19 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 21 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 22 C -0.15 -1.40 9.43 -39.44 -0.37 -1.78 16 23 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 24 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 25 H 0.06 0.25 8.14 -51.92 -0.42 -0.17 16 26 H 0.08 0.35 8.10 -51.93 -0.42 -0.07 16 27 H 0.08 0.41 8.10 -51.93 -0.42 -0.01 16 28 H 0.13 0.64 8.06 -52.48 -0.42 0.22 16 29 H 0.16 0.99 8.06 -52.49 -0.42 0.57 16 30 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.08 1.02 8.04 -51.93 -0.42 0.60 16 32 H 0.40 4.91 8.46 -40.82 -0.35 4.56 16 33 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 34 H 0.09 1.75 8.14 -51.91 -0.42 1.32 16 35 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 36 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 LS Contribution 330.94 15.07 4.99 4.99 Total: -1.00 -35.00 330.94 -8.32 -43.32 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: -4.95 Total: 0.44 kcal Atomic # 6 Polarization: -5.91 SS G_CDS: -1.50 Total: -7.41 kcal Atomic # 7 Polarization: -42.51 SS G_CDS: 0.30 Total: -42.21 kcal Atomic # 8 Polarization: -11.92 SS G_CDS: 0.09 Total: -11.83 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -35.00 -8.32 -43.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000437741873.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.147 kcal (2) G-P(sol) polarization free energy of solvation -34.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds