Wall clock time and date at job start Tue Mar 31 2020 01:37:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50700 * 109.46932 * 2 1 4 4 C 1.38675 * 120.78958 * 269.97721 * 3 2 1 5 5 C 1.38184 * 119.16617 * 180.02562 * 4 3 2 6 6 N 1.31882 * 120.76302 * 0.02562 * 5 4 3 7 7 C 1.31861 * 121.72456 * 359.68124 * 6 5 4 8 8 C 1.50704 * 119.61576 * 180.29006 * 7 6 5 9 9 N 1.46496 * 109.46965 * 275.28890 * 8 7 6 10 10 C 1.34784 * 119.99793 * 180.02562 * 9 8 7 11 11 O 1.21280 * 120.00003 * 359.97438 * 10 9 8 12 12 C 1.50696 * 119.99793 * 179.97438 * 10 9 8 13 13 S 1.81003 * 109.47010 * 179.97438 * 12 10 9 14 14 C 1.76198 * 99.99928 * 179.97438 * 13 12 10 15 15 H 1.08003 * 120.00378 * 0.02562 * 14 13 12 16 16 C 1.38802 * 120.00002 * 179.97438 * 14 13 12 17 17 N 1.31625 * 119.99979 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00223 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46898 * 90.00199 * 18 16 14 20 20 H 1.48496 * 109.47352 * 210.00293 * 18 16 14 21 21 H 1.48502 * 109.46968 * 330.00482 * 18 16 14 22 22 C 1.38221 * 120.76518 * 0.58353 * 7 6 5 23 23 H 1.08997 * 109.47117 * 299.99784 * 1 2 3 24 24 H 1.08995 * 109.47537 * 60.00529 * 1 2 3 25 25 H 1.09009 * 109.46870 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47117 * 240.00216 * 2 1 3 27 27 H 1.09004 * 109.47289 * 119.99439 * 2 1 3 28 28 H 1.08006 * 120.41367 * 0.04222 * 4 3 2 29 29 H 1.07993 * 119.61608 * 179.97438 * 5 4 3 30 30 H 1.09000 * 109.47059 * 35.29031 * 8 7 6 31 31 H 1.09000 * 109.46801 * 155.28956 * 8 7 6 32 32 H 0.96997 * 120.00400 * 359.97438 * 9 8 7 33 33 H 1.09000 * 109.47385 * 299.99585 * 12 10 9 34 34 H 1.09004 * 109.47718 * 59.99815 * 12 10 9 35 35 H 0.96997 * 120.00270 * 180.02562 * 17 16 14 36 36 H 1.08002 * 120.42313 * 179.73507 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2693 2.0899 -1.1913 5 6 2.7302 3.3921 -1.1521 6 7 2.9448 3.9973 -0.0002 7 6 2.7250 3.3941 1.1515 8 6 2.9802 4.1331 2.4399 9 7 4.3959 4.0156 2.7980 10 6 4.8579 4.6013 3.9206 11 8 4.1017 5.2260 4.6340 12 6 6.3140 4.4799 4.2893 13 16 6.6206 5.3676 5.8366 14 6 8.3467 5.0679 6.0245 15 1 8.8765 4.4826 5.2875 16 6 9.0258 5.5850 7.1190 17 7 8.3802 6.2987 8.0169 18 14 10.8556 5.2667 7.3186 19 1 11.6220 6.3467 6.6467 20 1 11.1990 5.2409 8.7630 21 1 11.2005 3.9593 6.7044 22 6 2.2690 2.0899 1.1909 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0278 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8901 28 1 2.0956 1.5995 -2.1378 29 1 2.9176 3.9198 -2.0755 30 1 2.7238 5.1848 2.3125 31 1 2.3680 3.7033 3.2327 32 1 5.0006 3.5157 2.2277 33 1 6.5701 3.4281 4.4166 34 1 6.9266 4.9097 3.4968 35 1 8.8548 6.6604 8.7817 36 1 2.0949 1.5997 2.1374 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000437741873.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:44 Heat of formation + Delta-G solvation = -41.182377 kcal Electronic energy + Delta-G solvation = -18119.626451 eV Core-core repulsion = 15114.404694 eV Total energy + Delta-G solvation = -3005.221757 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.48892 -40.44925 -36.44344 -35.55075 -34.58478 -32.85005 -31.27136 -30.82861 -27.80476 -27.23322 -25.28279 -23.84611 -21.86798 -21.66375 -19.87046 -18.00353 -17.76325 -17.60311 -16.96294 -16.87670 -16.50932 -16.15758 -15.85088 -15.07698 -14.91196 -14.76435 -14.50158 -14.34961 -14.25243 -13.90224 -13.33444 -13.29035 -13.16725 -12.88632 -12.72064 -12.59310 -12.34323 -11.81285 -11.73448 -11.14244 -11.12025 -10.50532 -10.44899 -10.28880 -10.20898 -10.05604 -8.67007 -8.34515 -6.12796 0.00485 0.27355 1.26834 1.42919 1.46938 1.56993 1.57857 2.22103 2.27824 2.85183 2.99522 3.16938 3.32176 3.55073 3.76331 3.93415 4.09239 4.15388 4.23416 4.28337 4.43761 4.46036 4.49297 4.51861 4.62856 4.77798 4.81476 4.99468 5.05949 5.13917 5.29227 5.36203 5.41996 5.42498 5.73511 6.20027 6.40392 6.99467 7.06587 7.16291 8.74801 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.033533 B = 0.002760 C = 0.002734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.798369 B =10142.257437 C =10240.524747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.085 4.085 3 C -0.042 4.042 4 C -0.159 4.159 5 C 0.091 3.909 6 N -0.505 5.505 7 C 0.099 3.901 8 C 0.176 3.824 9 N -0.707 5.707 10 C 0.537 3.463 11 O -0.562 6.562 12 C -0.128 4.128 13 S -0.148 6.148 14 C -0.547 4.547 15 H 0.083 0.917 16 C 0.013 3.987 17 N -0.911 5.911 18 Si 1.000 3.000 19 H -0.268 1.268 20 H -0.277 1.277 21 H -0.258 1.258 22 C -0.155 4.155 23 H 0.048 0.952 24 H 0.058 0.942 25 H 0.074 0.926 26 H 0.093 0.907 27 H 0.081 0.919 28 H 0.165 0.835 29 H 0.179 0.821 30 H 0.066 0.934 31 H 0.087 0.913 32 H 0.412 0.588 33 H 0.112 0.888 34 H 0.108 0.892 35 H 0.271 0.729 36 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.987 -15.339 -21.926 29.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.122 4.122 3 C -0.050 4.050 4 C -0.179 4.179 5 C -0.066 4.066 6 N -0.215 5.215 7 C -0.038 4.038 8 C 0.052 3.948 9 N -0.361 5.361 10 C 0.323 3.677 11 O -0.440 6.440 12 C -0.280 4.280 13 S 0.079 5.921 14 C -0.695 4.695 15 H 0.101 0.899 16 C -0.192 4.192 17 N -0.548 5.548 18 Si 0.821 3.179 19 H -0.194 1.194 20 H -0.202 1.202 21 H -0.182 1.182 22 C -0.175 4.175 23 H 0.067 0.933 24 H 0.077 0.923 25 H 0.092 0.908 26 H 0.112 0.888 27 H 0.100 0.900 28 H 0.183 0.817 29 H 0.196 0.804 30 H 0.085 0.915 31 H 0.105 0.895 32 H 0.248 0.752 33 H 0.130 0.870 34 H 0.126 0.874 35 H 0.080 0.920 36 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -13.960 -13.350 -20.586 28.229 hybrid contribution 1.691 -1.372 -0.569 2.251 sum -12.269 -14.722 -21.155 28.545 Atomic orbital electron populations 1.21743 0.93773 1.02860 1.02029 1.20658 0.96744 0.90238 1.04598 1.20682 0.94219 0.97588 0.92469 1.22429 0.99763 0.95770 0.99888 1.23224 0.94440 0.93028 0.95897 1.67448 1.15918 1.39254 0.98927 1.20934 0.97839 0.92298 0.92734 1.20044 0.82276 1.00265 0.92224 1.45676 1.10499 1.55284 1.24597 1.20061 0.89232 0.77892 0.80511 1.90694 1.58982 1.42183 1.52126 1.23357 0.95625 1.06001 1.02973 1.85563 1.11807 1.69413 1.25325 1.23204 0.93948 1.39562 1.12743 0.89935 1.26145 1.04889 0.93972 0.94207 1.70180 1.38704 1.33761 1.12116 0.84935 0.75941 0.79252 0.77727 1.19351 1.20212 1.18180 1.22059 1.00642 0.94482 1.00340 0.93268 0.92335 0.90754 0.88813 0.89999 0.81721 0.80432 0.91527 0.89465 0.75189 0.86999 0.87422 0.91958 0.83631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.89 71.98 0.71 -0.41 16 2 C -0.09 -0.69 6.11 29.85 0.18 -0.51 16 3 C -0.04 -0.54 5.17 -19.67 -0.10 -0.64 16 4 C -0.16 -1.86 9.82 22.36 0.22 -1.64 16 5 C 0.09 1.44 11.18 84.67 0.95 2.38 16 6 N -0.51 -11.42 10.27 -183.89 -1.89 -13.31 16 7 C 0.10 2.15 6.15 42.55 0.26 2.41 16 8 C 0.18 4.59 5.98 85.64 0.51 5.10 16 9 N -0.71 -20.05 5.55 -466.79 -2.59 -22.64 16 10 C 0.54 20.74 7.85 87.65 0.69 21.43 16 11 O -0.56 -26.76 15.86 -3.03 -0.05 -26.80 16 12 C -0.13 -5.25 6.16 71.23 0.44 -4.81 16 13 S -0.15 -8.37 20.57 -56.49 -1.16 -9.54 16 14 C -0.55 -31.61 9.50 67.95 0.65 -30.96 16 15 H 0.08 4.43 7.80 -2.91 -0.02 4.41 16 16 C 0.01 0.72 5.49 84.86 0.47 1.19 16 17 N -0.91 -56.48 13.22 21.65 0.29 -56.20 16 18 Si 1.00 43.97 29.55 68.60 2.03 46.00 16 19 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 20 H -0.28 -11.83 7.11 99.48 0.71 -11.13 16 21 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 22 C -0.15 -2.61 9.43 22.36 0.21 -2.40 16 23 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 24 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 25 H 0.07 0.41 8.14 -2.38 -0.02 0.39 16 26 H 0.09 0.48 8.10 -2.39 -0.02 0.46 16 27 H 0.08 0.64 8.10 -2.39 -0.02 0.62 16 28 H 0.17 0.87 8.06 -2.91 -0.02 0.85 16 29 H 0.18 1.84 8.06 -2.91 -0.02 1.81 16 30 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.09 2.18 8.04 -2.39 -0.02 2.16 16 32 H 0.41 9.55 8.46 -92.71 -0.78 8.77 16 33 H 0.11 4.08 8.14 -2.39 -0.02 4.06 16 34 H 0.11 4.03 8.14 -2.39 -0.02 4.01 16 35 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 36 H 0.15 2.10 8.06 -2.91 -0.02 2.08 16 Total: -1.00 -77.87 330.94 2.10 -75.77 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: 0.30 Total: 15.58 kcal Atomic # 6 Polarization: -14.04 SS G_CDS: 5.18 Total: -8.86 kcal Atomic # 7 Polarization: -87.95 SS G_CDS: -4.19 Total: -92.14 kcal Atomic # 8 Polarization: -26.76 SS G_CDS: -0.05 Total: -26.80 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Atomic # 16 Polarization: -8.37 SS G_CDS: -1.16 Total: -9.54 kcal Total: -77.87 2.10 -75.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000437741873.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.586 kcal (2) G-P(sol) polarization free energy of solvation -77.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds