Wall clock time and date at job start Tue Mar 31 2020 01:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81394 * 1 3 3 C 1.76204 * 102.99968 * 2 1 4 4 C 1.38777 * 120.10200 * 0.02562 * 3 2 1 5 5 C 1.38203 * 119.99164 * 179.71998 * 4 3 2 6 6 C 1.38299 * 120.19369 * 359.97438 * 5 4 3 7 7 C 1.38258 * 120.20318 * 359.97438 * 6 5 4 8 8 C 1.50704 * 119.99297 * 180.02562 * 7 6 5 9 9 C 1.38626 * 120.01389 * 0.04494 * 7 6 5 10 10 N 1.40197 * 120.09894 * 180.02562 * 9 7 6 11 11 C 1.34768 * 119.99805 * 266.53701 * 10 9 7 12 12 O 1.21594 * 120.00240 * 5.02261 * 11 10 9 13 13 N 1.34777 * 120.00320 * 185.02020 * 11 10 9 14 14 C 1.46496 * 120.00727 * 179.97438 * 13 11 10 15 15 C 1.50701 * 109.47461 * 179.97438 * 14 13 11 16 16 H 1.07994 * 119.99813 * 0.02562 * 15 14 13 17 17 C 1.37876 * 119.99721 * 180.02562 * 15 14 13 18 18 N 1.31515 * 120.00351 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 119.99546 * 180.02562 * 17 15 14 20 20 H 1.48492 * 109.47171 * 90.00121 * 19 17 15 21 21 H 1.48501 * 109.47027 * 209.99930 * 19 17 15 22 22 H 1.48496 * 109.47277 * 329.99482 * 19 17 15 23 23 H 1.09005 * 109.47420 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.47598 * 299.99683 * 1 2 3 25 25 H 1.09001 * 109.47630 * 60.00128 * 1 2 3 26 26 H 1.08006 * 120.00686 * 359.70264 * 4 3 2 27 27 H 1.07995 * 119.90894 * 179.97438 * 5 4 3 28 28 H 1.07995 * 119.89513 * 180.02562 * 6 5 4 29 29 H 1.09002 * 109.47226 * 89.99368 * 8 7 6 30 30 H 1.08996 * 109.47356 * 209.99834 * 8 7 6 31 31 H 1.09000 * 109.46632 * 329.99829 * 8 7 6 32 32 H 0.97001 * 120.00089 * 86.53830 * 10 9 7 33 33 H 0.97001 * 119.99730 * 0.02562 * 13 11 10 34 34 H 1.09003 * 109.47094 * 300.00513 * 14 13 11 35 35 H 1.09001 * 109.46508 * 59.99965 * 14 13 11 36 36 H 0.97002 * 120.00032 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 1.1970 2.6651 0.0005 5 6 1.5105 4.0111 0.0064 6 6 2.8325 4.4174 0.0122 7 6 3.8483 3.4796 0.0128 8 6 5.2872 3.9275 0.0198 9 6 3.5436 2.1272 0.0066 10 7 4.5723 1.1747 0.0077 11 6 5.0239 0.6694 -1.1572 12 8 4.6045 1.1048 -2.2121 13 7 5.9406 -0.3186 -1.1528 14 6 6.4313 -0.8684 -2.4190 15 6 7.4411 -1.9513 -2.1388 16 1 7.6920 -2.2050 -1.1195 17 6 8.0447 -2.6181 -3.1839 18 7 7.7387 -2.3095 -4.4251 19 14 9.2959 -3.9610 -2.8365 20 1 8.6014 -5.2691 -2.7294 21 1 10.2846 -4.0146 -3.9433 22 1 9.9967 -3.6666 -1.5608 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 0.1636 2.3513 -0.0039 27 1 0.7209 4.7479 0.0064 28 1 3.0719 5.4704 0.0172 29 1 5.6302 4.0321 1.0492 30 1 5.9006 3.1876 -0.4942 31 1 5.3714 4.8871 -0.4904 32 1 4.9589 0.8793 0.8469 33 1 6.2750 -0.6663 -0.3113 34 1 5.5963 -1.2863 -2.9815 35 1 6.9011 -0.0757 -3.0013 36 1 8.1636 -2.7784 -5.1603 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000488656564.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:16 Heat of formation + Delta-G solvation = -7.182094 kcal Electronic energy + Delta-G solvation = -19237.484826 eV Core-core repulsion = 16233.737433 eV Total energy + Delta-G solvation = -3003.747394 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.10508 -38.36154 -34.54970 -33.91434 -32.73457 -32.22710 -29.79931 -29.12042 -27.13671 -26.45651 -23.25455 -22.29865 -21.33725 -20.14037 -18.15464 -17.61135 -16.83419 -15.97388 -15.85507 -15.18323 -14.68313 -14.17378 -14.08440 -13.94787 -13.87112 -13.61585 -13.43495 -13.03010 -12.63308 -12.37856 -12.14326 -11.92341 -11.86120 -11.54136 -11.29056 -10.92537 -10.85488 -10.26510 -10.17301 -9.64439 -9.41230 -9.33116 -8.97304 -8.68082 -8.62321 -7.75200 -7.30698 -6.11406 -4.17753 1.20140 1.27979 1.54469 2.47018 3.27691 3.29537 3.34471 3.38400 3.66326 3.96343 4.36153 4.76531 4.88082 4.93598 4.96412 5.05824 5.21462 5.24708 5.32394 5.41302 5.53791 5.64186 5.73685 5.79019 6.12844 6.19948 6.36425 6.54420 6.68666 7.08136 7.21436 7.55191 7.57521 7.62143 7.92197 8.06872 8.79807 8.96649 9.37273 9.52040 10.98848 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.023045 B = 0.004301 C = 0.003841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.707806 B = 6509.035713 C = 7287.580815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 S -0.085 6.085 3 C -0.078 4.078 4 C -0.140 4.140 5 C -0.099 4.099 6 C -0.124 4.124 7 C -0.059 4.059 8 C -0.112 4.112 9 C 0.185 3.815 10 N -0.711 5.711 11 C 0.699 3.301 12 O -0.585 6.585 13 N -0.725 5.725 14 C 0.268 3.732 15 C -0.540 4.540 16 H 0.062 0.938 17 C 0.064 3.936 18 N -0.886 5.886 19 Si 0.903 3.097 20 H -0.279 1.279 21 H -0.285 1.285 22 H -0.273 1.273 23 H 0.106 0.894 24 H 0.080 0.920 25 H 0.082 0.918 26 H 0.123 0.877 27 H 0.124 0.876 28 H 0.126 0.874 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.400 0.600 33 H 0.387 0.613 34 H 0.025 0.975 35 H 0.024 0.976 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.461 10.498 13.359 21.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.323 4.323 2 S 0.159 5.841 3 C -0.193 4.193 4 C -0.165 4.165 5 C -0.118 4.118 6 C -0.145 4.145 7 C -0.062 4.062 8 C -0.169 4.169 9 C 0.086 3.914 10 N -0.367 5.367 11 C 0.399 3.601 12 O -0.462 6.462 13 N -0.378 5.378 14 C 0.147 3.853 15 C -0.579 4.579 16 H 0.081 0.919 17 C -0.140 4.140 18 N -0.523 5.523 19 Si 0.731 3.269 20 H -0.205 1.205 21 H -0.210 1.210 22 H -0.198 1.198 23 H 0.125 0.875 24 H 0.099 0.901 25 H 0.101 0.899 26 H 0.141 0.859 27 H 0.142 0.858 28 H 0.143 0.857 29 H 0.088 0.912 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.236 0.764 33 H 0.219 0.781 34 H 0.043 0.957 35 H 0.042 0.958 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -12.121 9.680 12.105 19.676 hybrid contribution 0.062 0.052 0.781 0.786 sum -12.059 9.732 12.887 20.155 Atomic orbital electron populations 1.23725 0.96392 1.06949 1.05276 1.85968 1.04358 1.02175 1.91600 1.22180 0.95887 0.97376 1.03820 1.20980 0.97760 0.93063 1.04661 1.20984 0.96474 0.95098 0.99274 1.20926 0.92124 0.99073 1.02419 1.20097 0.96623 0.91883 0.97634 1.20729 0.92036 1.02029 1.02059 1.16513 0.85182 0.87662 1.02063 1.42601 1.39868 1.45660 1.08596 1.16073 0.80317 0.80574 0.83099 1.90903 1.62168 1.63609 1.29547 1.45686 1.43087 1.36984 1.11994 1.18986 0.93986 0.93074 0.79224 1.21222 1.23991 1.19399 0.93278 0.91937 1.24935 0.96959 0.97284 0.94800 1.69984 1.42599 1.41329 0.98391 0.86422 0.80792 0.81757 0.77964 1.20497 1.21048 1.19781 0.87502 0.90064 0.89855 0.85877 0.85771 0.85651 0.91150 0.90834 0.91414 0.76359 0.78132 0.95657 0.95773 0.92502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.15 101.05 0.92 -0.59 16 2 S -0.08 -1.24 21.94 -107.50 -2.36 -3.60 16 3 C -0.08 -1.17 6.12 -38.91 -0.24 -1.41 16 4 C -0.14 -1.74 9.36 -39.40 -0.37 -2.11 16 5 C -0.10 -1.09 10.04 -39.57 -0.40 -1.49 16 6 C -0.12 -1.46 9.69 -39.55 -0.38 -1.85 16 7 C -0.06 -0.83 5.89 -104.47 -0.62 -1.45 16 8 C -0.11 -1.40 9.76 36.01 0.35 -1.05 16 9 C 0.18 2.94 5.27 -83.42 -0.44 2.50 16 10 N -0.71 -11.71 3.63 -14.07 -0.05 -11.76 16 11 C 0.70 14.99 8.04 -86.93 -0.70 14.29 16 12 O -0.59 -15.28 16.32 5.28 0.09 -15.19 16 13 N -0.73 -15.93 5.55 -66.42 -0.37 -16.30 16 14 C 0.27 7.31 5.43 -5.20 -0.03 7.28 16 15 C -0.54 -14.87 9.28 -34.44 -0.32 -15.19 16 16 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 17 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 18 N -0.89 -26.44 13.29 55.43 0.74 -25.71 16 19 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16 20 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 22 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 23 H 0.11 0.89 8.14 -51.92 -0.42 0.47 16 24 H 0.08 0.65 7.75 -51.92 -0.40 0.24 16 25 H 0.08 0.78 7.74 -51.92 -0.40 0.38 16 26 H 0.12 1.23 5.88 -52.48 -0.31 0.92 16 27 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 28 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.07 1.12 7.08 -51.93 -0.37 0.75 16 31 H 0.07 0.75 8.09 -51.93 -0.42 0.33 16 32 H 0.40 5.33 8.84 -40.82 -0.36 4.97 16 33 H 0.39 7.26 8.34 -40.82 -0.34 6.91 16 34 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.02 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 323.40 15.07 4.87 4.87 Total: -1.00 -34.40 323.40 -9.09 -43.48 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -4.67 Total: 7.51 kcal Atomic # 6 Polarization: 2.95 SS G_CDS: -2.31 Total: 0.64 kcal Atomic # 7 Polarization: -54.08 SS G_CDS: 0.32 Total: -53.76 kcal Atomic # 8 Polarization: -15.28 SS G_CDS: 0.09 Total: -15.19 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: -1.24 SS G_CDS: -2.36 Total: -3.60 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -34.40 -9.09 -43.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488656564.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.299 kcal (2) G-P(sol) polarization free energy of solvation -34.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds