Wall clock time and date at job start Tue Mar 31 2020 01:06:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81394 * 1 3 3 C 1.76204 * 102.99968 * 2 1 4 4 C 1.38777 * 120.10200 * 0.02562 * 3 2 1 5 5 C 1.38203 * 119.99164 * 179.71998 * 4 3 2 6 6 C 1.38299 * 120.19369 * 359.97438 * 5 4 3 7 7 C 1.38258 * 120.20318 * 359.97438 * 6 5 4 8 8 C 1.50704 * 119.99297 * 180.02562 * 7 6 5 9 9 C 1.38626 * 120.01389 * 0.04494 * 7 6 5 10 10 N 1.40197 * 120.09894 * 180.02562 * 9 7 6 11 11 C 1.34768 * 119.99805 * 266.53701 * 10 9 7 12 12 O 1.21594 * 120.00240 * 5.02261 * 11 10 9 13 13 N 1.34777 * 120.00320 * 185.02020 * 11 10 9 14 14 C 1.46496 * 120.00727 * 179.97438 * 13 11 10 15 15 C 1.50701 * 109.47461 * 179.97438 * 14 13 11 16 16 H 1.07994 * 119.99813 * 0.02562 * 15 14 13 17 17 C 1.37876 * 119.99721 * 180.02562 * 15 14 13 18 18 N 1.31515 * 120.00351 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 119.99546 * 180.02562 * 17 15 14 20 20 H 1.48492 * 109.47171 * 90.00121 * 19 17 15 21 21 H 1.48501 * 109.47027 * 209.99930 * 19 17 15 22 22 H 1.48496 * 109.47277 * 329.99482 * 19 17 15 23 23 H 1.09005 * 109.47420 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.47598 * 299.99683 * 1 2 3 25 25 H 1.09001 * 109.47630 * 60.00128 * 1 2 3 26 26 H 1.08006 * 120.00686 * 359.70264 * 4 3 2 27 27 H 1.07995 * 119.90894 * 179.97438 * 5 4 3 28 28 H 1.07995 * 119.89513 * 180.02562 * 6 5 4 29 29 H 1.09002 * 109.47226 * 89.99368 * 8 7 6 30 30 H 1.08996 * 109.47356 * 209.99834 * 8 7 6 31 31 H 1.09000 * 109.46632 * 329.99829 * 8 7 6 32 32 H 0.97001 * 120.00089 * 86.53830 * 10 9 7 33 33 H 0.97001 * 119.99730 * 0.02562 * 13 11 10 34 34 H 1.09003 * 109.47094 * 300.00513 * 14 13 11 35 35 H 1.09001 * 109.46508 * 59.99965 * 14 13 11 36 36 H 0.97002 * 120.00032 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 1.1970 2.6651 0.0005 5 6 1.5105 4.0111 0.0064 6 6 2.8325 4.4174 0.0122 7 6 3.8483 3.4796 0.0128 8 6 5.2872 3.9275 0.0198 9 6 3.5436 2.1272 0.0066 10 7 4.5723 1.1747 0.0077 11 6 5.0239 0.6694 -1.1572 12 8 4.6045 1.1048 -2.2121 13 7 5.9406 -0.3186 -1.1528 14 6 6.4313 -0.8684 -2.4190 15 6 7.4411 -1.9513 -2.1388 16 1 7.6920 -2.2050 -1.1195 17 6 8.0447 -2.6181 -3.1839 18 7 7.7387 -2.3095 -4.4251 19 14 9.2959 -3.9610 -2.8365 20 1 8.6014 -5.2691 -2.7294 21 1 10.2846 -4.0146 -3.9433 22 1 9.9967 -3.6666 -1.5608 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 0.1636 2.3513 -0.0039 27 1 0.7209 4.7479 0.0064 28 1 3.0719 5.4704 0.0172 29 1 5.6302 4.0321 1.0492 30 1 5.9006 3.1876 -0.4942 31 1 5.3714 4.8871 -0.4904 32 1 4.9589 0.8793 0.8469 33 1 6.2750 -0.6663 -0.3113 34 1 5.5963 -1.2863 -2.9815 35 1 6.9011 -0.0757 -3.0013 36 1 8.1636 -2.7784 -5.1603 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000488656564.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:15 Heat of formation + Delta-G solvation = -30.570625 kcal Electronic energy + Delta-G solvation = -19238.499029 eV Core-core repulsion = 16233.737433 eV Total energy + Delta-G solvation = -3004.761596 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.48141 -39.75013 -36.24787 -35.64017 -34.32404 -33.71166 -30.95861 -30.04990 -28.97286 -27.58640 -25.00560 -23.64439 -22.57412 -21.73074 -19.94178 -18.82030 -18.09361 -17.83212 -17.10293 -16.75089 -16.14653 -15.85240 -15.63225 -15.08339 -14.79753 -14.72097 -14.62850 -14.37818 -14.03052 -13.98048 -13.53511 -13.26107 -13.08816 -12.89512 -12.71582 -12.52513 -12.30037 -12.21526 -11.47082 -11.34745 -11.16394 -10.79662 -10.61626 -10.45958 -9.72479 -9.64536 -8.40536 -8.27323 -6.43948 0.17806 0.27773 0.55126 1.43730 1.46855 1.52321 1.57747 1.86176 2.22799 2.40227 2.66287 3.07525 3.47275 3.81652 4.01832 4.22168 4.23830 4.29539 4.39424 4.42005 4.65123 4.74497 4.78768 4.85816 5.06836 5.16667 5.20756 5.27148 5.41589 5.48304 5.51361 5.61992 5.66429 5.84832 6.03967 6.15364 6.67193 7.22704 7.27975 7.71617 8.85106 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.023045 B = 0.004301 C = 0.003841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.707806 B = 6509.035713 C = 7287.580815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 S -0.164 6.164 3 C -0.090 4.090 4 C -0.144 4.144 5 C -0.089 4.089 6 C -0.123 4.123 7 C -0.075 4.075 8 C -0.108 4.108 9 C 0.142 3.858 10 N -0.686 5.686 11 C 0.704 3.296 12 O -0.636 6.636 13 N -0.720 5.720 14 C 0.289 3.711 15 C -0.554 4.554 16 H 0.083 0.917 17 C 0.005 3.995 18 N -0.931 5.931 19 Si 0.986 3.014 20 H -0.271 1.271 21 H -0.283 1.283 22 H -0.255 1.255 23 H 0.121 0.879 24 H 0.104 0.896 25 H 0.088 0.912 26 H 0.148 0.852 27 H 0.164 0.836 28 H 0.157 0.843 29 H 0.094 0.906 30 H 0.038 0.962 31 H 0.083 0.917 32 H 0.414 0.586 33 H 0.404 0.596 34 H -0.017 1.017 35 H -0.014 1.014 36 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.290 11.291 15.429 23.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.302 4.302 2 S 0.079 5.921 3 C -0.205 4.205 4 C -0.168 4.168 5 C -0.109 4.109 6 C -0.144 4.144 7 C -0.078 4.078 8 C -0.165 4.165 9 C 0.044 3.956 10 N -0.341 5.341 11 C 0.405 3.595 12 O -0.516 6.516 13 N -0.374 5.374 14 C 0.166 3.834 15 C -0.592 4.592 16 H 0.101 0.899 17 C -0.195 4.195 18 N -0.569 5.569 19 Si 0.809 3.191 20 H -0.196 1.196 21 H -0.208 1.208 22 H -0.179 1.179 23 H 0.139 0.861 24 H 0.123 0.877 25 H 0.107 0.893 26 H 0.166 0.834 27 H 0.182 0.818 28 H 0.175 0.825 29 H 0.112 0.888 30 H 0.057 0.943 31 H 0.101 0.899 32 H 0.253 0.747 33 H 0.239 0.761 34 H 0.001 0.999 35 H 0.004 0.996 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -12.966 10.497 14.271 21.954 hybrid contribution 0.165 -0.070 0.159 0.240 sum -12.801 10.427 14.430 21.927 Atomic orbital electron populations 1.23774 0.91412 1.08362 1.06643 1.86118 1.10054 1.03920 1.92020 1.22272 0.96200 0.97285 1.04706 1.21381 0.98362 0.93319 1.03730 1.21485 0.97282 0.95276 0.96827 1.21339 0.91920 1.00183 1.00982 1.20371 0.97948 0.91571 0.97882 1.20722 0.90937 1.01547 1.03269 1.16905 0.85329 0.88247 1.05131 1.42171 1.39510 1.45027 1.07373 1.16128 0.79595 0.79976 0.83780 1.90851 1.63742 1.65093 1.31960 1.45271 1.43589 1.37427 1.11071 1.18390 0.92382 0.92010 0.80586 1.21581 1.23873 1.19298 0.94446 0.89879 1.26058 0.99158 0.99951 0.94294 1.70150 1.44107 1.42927 0.99762 0.85137 0.77600 0.77953 0.78388 1.19648 1.20836 1.17899 0.86087 0.87712 0.89285 0.83413 0.81822 0.82512 0.88798 0.94326 0.89852 0.74717 0.76111 0.99900 0.99637 0.92237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.37 9.15 113.37 1.04 -1.34 16 2 S -0.16 -4.88 21.94 -56.49 -1.24 -6.12 16 3 C -0.09 -2.68 6.12 22.70 0.14 -2.54 16 4 C -0.14 -3.23 9.36 22.39 0.21 -3.02 16 5 C -0.09 -1.66 10.04 22.28 0.22 -1.44 16 6 C -0.12 -2.56 9.69 22.29 0.22 -2.34 16 7 C -0.07 -2.03 5.89 -19.77 -0.12 -2.15 16 8 C -0.11 -2.64 9.76 71.24 0.70 -1.95 16 9 C 0.14 4.55 5.27 38.20 0.20 4.75 16 10 N -0.69 -23.34 3.63 -316.68 -1.15 -24.49 16 11 C 0.70 31.77 8.04 179.06 1.44 33.21 16 12 O -0.64 -35.19 16.32 -4.01 -0.07 -35.26 16 13 N -0.72 -33.09 5.55 -482.30 -2.68 -35.77 16 14 C 0.29 16.70 5.43 85.63 0.46 17.16 16 15 C -0.55 -31.07 9.28 25.60 0.24 -30.83 16 16 H 0.08 4.21 7.60 -2.91 -0.02 4.19 16 17 C 0.00 0.28 5.46 84.65 0.46 0.74 16 18 N -0.93 -57.35 13.29 21.45 0.28 -57.07 16 19 Si 0.99 43.13 29.54 68.60 2.03 45.15 16 20 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 21 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 22 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 23 H 0.12 1.80 8.14 -2.39 -0.02 1.79 16 24 H 0.10 1.37 7.75 -2.39 -0.02 1.35 16 25 H 0.09 1.49 7.74 -2.39 -0.02 1.48 16 26 H 0.15 2.47 5.88 -2.91 -0.02 2.45 16 27 H 0.16 1.75 8.06 -2.91 -0.02 1.73 16 28 H 0.16 2.20 8.06 -2.91 -0.02 2.18 16 29 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.04 1.21 7.08 -2.39 -0.02 1.19 16 31 H 0.08 1.73 8.09 -2.39 -0.02 1.71 16 32 H 0.41 11.32 8.84 -92.71 -0.82 10.50 16 33 H 0.40 15.48 8.34 -92.71 -0.77 14.71 16 34 H -0.02 -1.11 8.14 -2.39 -0.02 -1.13 16 35 H -0.01 -0.92 8.14 -2.39 -0.02 -0.94 16 36 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 Total: -1.00 -79.49 323.40 1.91 -77.58 By element: Atomic # 1 Polarization: 26.18 SS G_CDS: -0.48 Total: 25.70 kcal Atomic # 6 Polarization: 5.06 SS G_CDS: 5.21 Total: 10.27 kcal Atomic # 7 Polarization: -113.78 SS G_CDS: -3.54 Total: -117.32 kcal Atomic # 8 Polarization: -35.19 SS G_CDS: -0.07 Total: -35.26 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.15 kcal Atomic # 16 Polarization: -4.88 SS G_CDS: -1.24 Total: -6.12 kcal Total: -79.49 1.91 -77.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488656564.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.010 kcal (2) G-P(sol) polarization free energy of solvation -79.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds