Wall clock time and date at job start Tue Mar 31 2020 02:03:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47018 * 198.84645 * 3 2 1 5 5 C 1.36707 * 119.99703 * 264.55865 * 4 3 2 6 6 H 1.08009 * 119.99605 * 207.87713 * 5 4 3 7 7 C 1.39120 * 120.00406 * 27.86952 * 5 4 3 8 8 N 1.31319 * 119.99729 * 356.02845 * 7 5 4 9 9 Si 1.86803 * 120.00229 * 176.02715 * 7 5 4 10 10 H 1.48493 * 109.46986 * 60.00008 * 9 7 5 11 11 H 1.48499 * 109.47158 * 180.02562 * 9 7 5 12 12 H 1.48508 * 109.46730 * 300.00331 * 9 7 5 13 13 C 1.34773 * 119.99823 * 84.55855 * 4 3 2 14 14 O 1.21761 * 119.99885 * 180.02562 * 13 4 3 15 15 C 1.46235 * 120.00660 * 0.27344 * 13 4 3 16 16 C 1.34963 * 120.00329 * 172.59297 * 15 13 4 17 17 C 1.47169 * 119.99930 * 349.79525 * 16 15 13 18 18 C 1.39982 * 120.10032 * 135.76897 * 17 16 15 19 19 C 1.37973 * 120.12941 * 179.97438 * 18 17 16 20 20 C 1.38147 * 120.33680 * 359.97438 * 19 18 17 21 21 C 1.39749 * 120.19894 * 0.02562 * 20 19 18 22 22 C 1.43203 * 120.06653 * 180.02562 * 21 20 19 23 23 N 8.45132 * 145.27125 * 217.36883 * 2 1 3 24 24 C 1.39327 * 119.86655 * 359.74214 * 21 20 19 25 25 H 4.40639 * 5.51474 * 180.02562 * 4 1 2 26 26 H 1.08995 * 109.47360 * 78.84155 * 3 2 1 27 27 H 1.09006 * 109.46893 * 318.84592 * 3 2 1 28 28 H 0.97002 * 119.99918 * 179.97438 * 8 7 5 29 29 H 1.08006 * 119.99535 * 352.59020 * 15 13 4 30 30 H 1.07996 * 119.99780 * 169.79658 * 16 15 13 31 31 H 1.08000 * 119.93415 * 359.95613 * 18 17 16 32 32 H 1.07998 * 119.83497 * 180.02562 * 19 18 17 33 33 H 1.08004 * 119.89750 * 180.02562 * 20 19 18 34 34 H 1.07997 * 120.16619 * 180.27560 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3081 0.4462 5 6 3.4670 2.2634 -0.4732 6 1 4.2107 3.0086 -0.2322 7 6 2.8484 2.2756 -1.7192 8 7 2.0021 1.3245 -2.0414 9 14 3.2214 3.6448 -2.9339 10 1 4.6716 3.6415 -3.2534 11 1 2.4395 3.4296 -4.1779 12 1 2.8493 4.9521 -2.3357 13 6 3.2539 1.5689 1.7630 14 8 3.6588 2.6557 2.1338 15 6 2.9031 0.5450 2.7463 16 6 3.1627 0.7490 4.0549 17 6 3.9946 1.8895 4.4710 18 6 3.6097 2.6783 5.5615 19 6 4.3895 3.7473 5.9524 20 6 5.5541 4.0470 5.2725 21 6 5.9515 3.2688 4.1819 22 6 7.1597 3.5816 3.4796 23 7 8.1198 3.8264 2.9222 24 6 5.1730 2.1844 3.7830 25 1 -1.0502 -0.0004 0.0001 26 1 3.0095 -0.1980 -1.0082 27 1 3.0097 -0.7730 0.6763 28 1 1.5705 1.3332 -2.9101 29 1 2.4362 -0.3745 2.4253 30 1 2.7601 0.0752 4.7967 31 1 2.7005 2.4498 6.0977 32 1 4.0882 4.3525 6.7947 33 1 6.1593 4.8853 5.5849 34 1 5.4779 1.5770 2.9436 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490971149.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:03:49 Heat of formation + Delta-G solvation = 121.402071 kcal Electronic energy + Delta-G solvation = -20562.735705 eV Core-core repulsion = 17429.120188 eV Total energy + Delta-G solvation = -3133.615517 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.095 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.49524 -38.35675 -36.12464 -35.35434 -33.27211 -32.15873 -31.34582 -30.94887 -29.34008 -26.61702 -25.13961 -23.47115 -23.20608 -21.12375 -18.92590 -17.99633 -17.62819 -16.60594 -16.28610 -16.05825 -15.12709 -14.76683 -14.29826 -14.09754 -13.76603 -13.69222 -13.24051 -12.96360 -12.79028 -12.46053 -12.40371 -12.29079 -12.07264 -11.68915 -11.43579 -11.16861 -11.15847 -10.79696 -10.68639 -10.46455 -9.58615 -9.51992 -9.32565 -8.85762 -8.73943 -8.42135 -7.90516 -7.58287 -6.45558 -4.03956 1.04140 1.41087 2.25253 3.01182 3.14963 3.18254 3.22552 3.34840 3.70772 3.96194 4.10146 4.20625 4.30070 4.36103 4.88580 5.01868 5.06805 5.15336 5.31402 5.41374 5.50496 5.59349 5.81525 5.87878 6.03321 6.25460 6.29063 6.47081 6.57560 6.62978 6.75715 6.82620 6.93738 7.01526 7.17769 7.38842 7.83773 7.99945 8.32801 8.75698 9.02329 9.20009 9.82134 10.51831 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.016152 B = 0.006076 C = 0.004812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.112156 B = 4607.466683 C = 5817.866748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.268 4.268 2 C -0.107 4.107 3 C 0.226 3.774 4 N -0.422 5.422 5 C -0.303 4.303 6 H 0.102 0.898 7 C 0.035 3.965 8 N -0.864 5.864 9 Si 0.928 3.072 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.271 1.271 13 C 0.458 3.542 14 O -0.571 6.571 15 C -0.163 4.163 16 C -0.089 4.089 17 C -0.044 4.044 18 C -0.081 4.081 19 C -0.139 4.139 20 C -0.073 4.073 21 C -0.051 4.051 22 C 0.268 3.732 23 N -0.440 5.440 24 C 0.027 3.973 25 H 0.199 0.801 26 H 0.121 0.879 27 H 0.060 0.940 28 H 0.273 0.727 29 H 0.123 0.877 30 H 0.128 0.872 31 H 0.123 0.877 32 H 0.124 0.876 33 H 0.122 0.878 34 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.403 -3.600 11.356 11.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.287 4.287 2 C -0.108 4.108 3 C 0.104 3.896 4 N -0.137 5.137 5 C -0.431 4.431 6 H 0.120 0.880 7 C -0.170 4.170 8 N -0.501 5.501 9 Si 0.754 3.246 10 H -0.197 1.197 11 H -0.208 1.208 12 H -0.197 1.197 13 C 0.250 3.750 14 O -0.458 6.458 15 C -0.185 4.185 16 C -0.110 4.110 17 C -0.044 4.044 18 C -0.100 4.100 19 C -0.158 4.158 20 C -0.093 4.093 21 C -0.054 4.054 22 C -0.046 4.046 23 N -0.115 5.115 24 C 0.006 3.994 25 H 0.216 0.784 26 H 0.138 0.862 27 H 0.078 0.922 28 H 0.084 0.916 29 H 0.140 0.860 30 H 0.145 0.855 31 H 0.141 0.859 32 H 0.142 0.858 33 H 0.140 0.860 34 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 1.196 -2.739 10.384 10.806 hybrid contribution -0.958 0.521 -0.849 1.382 sum 0.238 -2.219 9.535 9.793 Atomic orbital electron populations 1.24283 0.95405 1.02905 1.06110 1.23154 0.94313 0.97680 0.95686 1.18476 0.84265 0.84951 1.01943 1.43674 1.53850 1.11754 1.04464 1.19633 1.20932 1.09180 0.93332 0.88012 1.25499 0.94930 0.97789 0.98769 1.69851 1.26722 1.31110 1.22417 0.85960 0.78619 0.81158 0.78850 1.19678 1.20779 1.19658 1.18178 0.85942 0.88324 0.82559 1.90696 1.51436 1.25364 1.78294 1.23366 1.01851 0.98977 0.94262 1.21992 0.97411 0.96230 0.95356 1.18676 0.94186 0.96450 0.95112 1.21338 0.98619 0.94521 0.95538 1.20740 0.95295 0.98638 1.01094 1.21009 0.96652 0.97873 0.93812 1.15778 0.91437 1.00170 0.98046 1.25820 0.92686 0.93200 0.92913 1.81202 1.12263 1.08813 1.09262 1.21156 0.91218 0.93469 0.93561 0.78438 0.86165 0.92202 0.91647 0.85951 0.85464 0.85939 0.85778 0.86005 0.85835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -5.35 19.25 29.55 0.57 -4.78 16 2 C -0.11 -2.29 11.03 -37.12 -0.41 -2.70 16 3 C 0.23 4.78 4.78 -6.83 -0.03 4.75 16 4 N -0.42 -10.12 2.59 -119.59 -0.31 -10.43 16 5 C -0.30 -8.00 9.18 -15.05 -0.14 -8.14 16 6 H 0.10 2.83 7.48 -52.48 -0.39 2.44 16 7 C 0.04 0.89 5.34 -17.44 -0.09 0.80 16 8 N -0.86 -21.71 8.76 55.50 0.49 -21.23 16 9 Si 0.93 20.47 29.56 -169.99 -5.02 15.45 16 10 H -0.27 -5.94 7.11 56.52 0.40 -5.53 16 11 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 12 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 13 C 0.46 10.34 6.56 -13.05 -0.09 10.25 16 14 O -0.57 -14.19 11.89 5.13 0.06 -14.13 16 15 C -0.16 -2.85 8.94 -37.53 -0.34 -3.19 16 16 C -0.09 -1.31 9.81 -37.12 -0.36 -1.67 16 17 C -0.04 -0.69 4.52 -105.11 -0.48 -1.17 16 18 C -0.08 -1.08 9.79 -39.03 -0.38 -1.46 16 19 C -0.14 -1.70 10.01 -39.71 -0.40 -2.10 16 20 C -0.07 -0.98 9.75 -39.05 -0.38 -1.36 16 21 C -0.05 -0.82 5.72 -107.00 -0.61 -1.44 16 22 C 0.27 4.76 15.32 -22.44 -0.34 4.41 16 23 N -0.44 -8.47 18.54 41.87 0.78 -7.69 16 24 C 0.03 0.47 6.30 -38.67 -0.24 0.23 16 25 H 0.20 3.21 7.80 -54.08 -0.42 2.79 16 26 H 0.12 2.71 6.44 -51.93 -0.33 2.38 16 27 H 0.06 1.04 6.52 -51.93 -0.34 0.70 16 28 H 0.27 6.63 8.31 -40.82 -0.34 6.29 16 29 H 0.12 1.90 6.25 -52.48 -0.33 1.57 16 30 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 31 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 32 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 33 H 0.12 1.35 8.06 -52.48 -0.42 0.93 16 34 H 0.12 2.30 7.05 -52.49 -0.37 1.93 16 LS Contribution 311.03 15.07 4.69 4.69 Total: -1.00 -30.26 311.03 -6.06 -36.32 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -3.01 Total: 4.60 kcal Atomic # 6 Polarization: -3.85 SS G_CDS: -3.73 Total: -7.58 kcal Atomic # 7 Polarization: -40.31 SS G_CDS: 0.95 Total: -39.35 kcal Atomic # 8 Polarization: -14.19 SS G_CDS: 0.06 Total: -14.13 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -30.26 -6.06 -36.32 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490971149.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.724 kcal (2) G-P(sol) polarization free energy of solvation -30.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds