Wall clock time and date at job start Tue Mar 31 2020 02:03:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47018 * 198.84645 * 3 2 1 5 5 C 1.36707 * 119.99703 * 264.55865 * 4 3 2 6 6 H 1.08009 * 119.99605 * 207.87713 * 5 4 3 7 7 C 1.39120 * 120.00406 * 27.86952 * 5 4 3 8 8 N 1.31319 * 119.99729 * 356.02845 * 7 5 4 9 9 Si 1.86803 * 120.00229 * 176.02715 * 7 5 4 10 10 H 1.48493 * 109.46986 * 60.00008 * 9 7 5 11 11 H 1.48499 * 109.47158 * 180.02562 * 9 7 5 12 12 H 1.48508 * 109.46730 * 300.00331 * 9 7 5 13 13 C 1.34773 * 119.99823 * 84.55855 * 4 3 2 14 14 O 1.21761 * 119.99885 * 180.02562 * 13 4 3 15 15 C 1.46235 * 120.00660 * 0.27344 * 13 4 3 16 16 C 1.34963 * 120.00329 * 172.59297 * 15 13 4 17 17 C 1.47169 * 119.99930 * 349.79525 * 16 15 13 18 18 C 1.39982 * 120.10032 * 135.76897 * 17 16 15 19 19 C 1.37973 * 120.12941 * 179.97438 * 18 17 16 20 20 C 1.38147 * 120.33680 * 359.97438 * 19 18 17 21 21 C 1.39749 * 120.19894 * 0.02562 * 20 19 18 22 22 C 1.43203 * 120.06653 * 180.02562 * 21 20 19 23 23 N 8.45132 * 145.27125 * 217.36883 * 2 1 3 24 24 C 1.39327 * 119.86655 * 359.74214 * 21 20 19 25 25 H 4.40639 * 5.51474 * 180.02562 * 4 1 2 26 26 H 1.08995 * 109.47360 * 78.84155 * 3 2 1 27 27 H 1.09006 * 109.46893 * 318.84592 * 3 2 1 28 28 H 0.97002 * 119.99918 * 179.97438 * 8 7 5 29 29 H 1.08006 * 119.99535 * 352.59020 * 15 13 4 30 30 H 1.07996 * 119.99780 * 169.79658 * 16 15 13 31 31 H 1.08000 * 119.93415 * 359.95613 * 18 17 16 32 32 H 1.07998 * 119.83497 * 180.02562 * 19 18 17 33 33 H 1.08004 * 119.89750 * 180.02562 * 20 19 18 34 34 H 1.07997 * 120.16619 * 180.27560 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3081 0.4462 5 6 3.4670 2.2634 -0.4732 6 1 4.2107 3.0086 -0.2322 7 6 2.8484 2.2756 -1.7192 8 7 2.0021 1.3245 -2.0414 9 14 3.2214 3.6448 -2.9339 10 1 4.6716 3.6415 -3.2534 11 1 2.4395 3.4296 -4.1779 12 1 2.8493 4.9521 -2.3357 13 6 3.2539 1.5689 1.7630 14 8 3.6588 2.6557 2.1338 15 6 2.9031 0.5450 2.7463 16 6 3.1627 0.7490 4.0549 17 6 3.9946 1.8895 4.4710 18 6 3.6097 2.6783 5.5615 19 6 4.3895 3.7473 5.9524 20 6 5.5541 4.0470 5.2725 21 6 5.9515 3.2688 4.1819 22 6 7.1597 3.5816 3.4796 23 7 8.1198 3.8264 2.9222 24 6 5.1730 2.1844 3.7830 25 1 -1.0502 -0.0004 0.0001 26 1 3.0095 -0.1980 -1.0082 27 1 3.0097 -0.7730 0.6763 28 1 1.5705 1.3332 -2.9101 29 1 2.4362 -0.3745 2.4253 30 1 2.7601 0.0752 4.7967 31 1 2.7005 2.4498 6.0977 32 1 4.0882 4.3525 6.7947 33 1 6.1593 4.8853 5.5849 34 1 5.4779 1.5770 2.9436 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490971149.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:03:48 Heat of formation + Delta-G solvation = 105.366855 kcal Electronic energy + Delta-G solvation = -20563.431044 eV Core-core repulsion = 17429.120188 eV Total energy + Delta-G solvation = -3134.310856 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.095 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.92248 -39.79396 -37.58799 -37.01182 -34.64140 -33.90190 -33.01162 -32.12823 -30.60441 -28.30718 -26.80305 -24.71944 -24.55977 -22.50019 -20.28241 -19.64161 -19.19101 -18.23579 -17.84377 -17.18070 -16.55074 -16.32248 -15.89550 -15.70345 -15.13561 -15.06165 -14.63226 -14.37791 -14.19857 -14.07373 -13.85912 -13.79676 -13.38131 -13.21024 -13.02751 -12.93975 -12.54843 -12.30457 -12.21380 -11.95828 -11.32429 -10.98958 -10.78832 -10.52449 -10.26018 -9.83003 -9.54587 -8.93113 -8.31527 -5.99466 -0.14364 0.14897 1.06105 1.35455 1.38241 1.44554 1.59418 2.01168 2.08502 2.27885 2.41883 2.61985 2.94622 3.11112 3.15498 3.34604 3.90007 3.93290 4.08150 4.20919 4.27565 4.43739 4.57764 4.71440 4.78844 4.90224 5.09973 5.14142 5.30333 5.35004 5.39871 5.49208 5.50729 5.61264 5.74213 6.06825 6.14766 6.44226 6.50557 7.15686 7.19416 7.44573 8.06261 8.63130 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.016152 B = 0.006076 C = 0.004812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.112156 B = 4607.466683 C = 5817.866748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C -0.143 4.143 3 C 0.232 3.768 4 N -0.447 5.447 5 C -0.336 4.336 6 H 0.070 0.930 7 C 0.005 3.995 8 N -0.874 5.874 9 Si 0.977 3.023 10 H -0.272 1.272 11 H -0.268 1.268 12 H -0.283 1.283 13 C 0.461 3.539 14 O -0.603 6.603 15 C -0.201 4.201 16 C -0.040 4.040 17 C -0.076 4.076 18 C -0.068 4.068 19 C -0.130 4.130 20 C -0.066 4.066 21 C -0.074 4.074 22 C 0.280 3.720 23 N -0.479 5.479 24 C 0.008 3.992 25 H 0.231 0.769 26 H 0.097 0.903 27 H 0.093 0.907 28 H 0.272 0.728 29 H 0.143 0.857 30 H 0.181 0.819 31 H 0.160 0.840 32 H 0.168 0.832 33 H 0.147 0.853 34 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.290 -3.804 14.448 15.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.275 4.275 2 C -0.145 4.145 3 C 0.110 3.890 4 N -0.163 5.163 5 C -0.465 4.465 6 H 0.088 0.912 7 C -0.198 4.198 8 N -0.511 5.511 9 Si 0.802 3.198 10 H -0.197 1.197 11 H -0.193 1.193 12 H -0.209 1.209 13 C 0.254 3.746 14 O -0.491 6.491 15 C -0.222 4.222 16 C -0.060 4.060 17 C -0.076 4.076 18 C -0.087 4.087 19 C -0.148 4.148 20 C -0.086 4.086 21 C -0.078 4.078 22 C -0.033 4.033 23 N -0.156 5.156 24 C -0.014 4.014 25 H 0.248 0.752 26 H 0.115 0.885 27 H 0.111 0.889 28 H 0.082 0.918 29 H 0.161 0.839 30 H 0.198 0.802 31 H 0.178 0.822 32 H 0.185 0.815 33 H 0.165 0.835 34 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -0.689 -2.968 13.488 13.828 hybrid contribution -0.336 0.630 -1.479 1.643 sum -1.025 -2.338 12.009 12.277 Atomic orbital electron populations 1.25117 0.96342 1.01430 1.04618 1.23450 0.94928 0.99041 0.97062 1.18409 0.84587 0.84579 1.01453 1.43777 1.55486 1.12357 1.04725 1.19402 1.21839 1.10189 0.95052 0.91248 1.25993 0.94935 0.99327 0.99528 1.69959 1.27115 1.31541 1.22489 0.85241 0.78449 0.78504 0.77616 1.19741 1.19284 1.20879 1.19043 0.83558 0.89087 0.82940 1.90666 1.52161 1.27208 1.79094 1.23206 1.05618 0.99280 0.94075 1.22613 0.93172 0.95020 0.95160 1.18983 0.94068 0.98083 0.96490 1.21813 0.99485 0.93475 0.93898 1.21270 0.93882 0.98225 1.01417 1.21407 0.97345 0.97585 0.92293 1.16001 0.91149 1.01092 0.99572 1.26242 0.92686 0.92196 0.92211 1.81188 1.13624 1.10254 1.10485 1.21047 0.92914 0.93946 0.93454 0.75204 0.88508 0.88933 0.91761 0.83939 0.80241 0.82201 0.81459 0.83514 0.88869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -9.87 19.25 74.32 1.43 -8.44 16 2 C -0.14 -6.12 11.03 31.13 0.34 -5.78 16 3 C 0.23 10.03 4.78 84.57 0.40 10.43 16 4 N -0.45 -22.31 2.59 -650.46 -1.68 -23.99 16 5 C -0.34 -18.82 9.18 84.15 0.77 -18.04 16 6 H 0.07 4.19 7.48 -2.91 -0.02 4.17 16 7 C 0.01 0.29 5.34 84.98 0.45 0.74 16 8 N -0.87 -45.04 8.76 21.69 0.19 -44.85 16 9 Si 0.98 43.51 29.56 68.60 2.03 45.54 16 10 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 11 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 12 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 13 C 0.46 21.28 6.56 86.32 0.57 21.84 16 14 O -0.60 -30.97 11.89 -4.54 -0.05 -31.02 16 15 C -0.20 -6.74 8.94 23.60 0.21 -6.53 16 16 C -0.04 -1.03 9.81 23.86 0.23 -0.80 16 17 C -0.08 -2.20 4.52 -20.18 -0.09 -2.29 16 18 C -0.07 -1.48 9.79 22.63 0.22 -1.26 16 19 C -0.13 -2.55 10.01 22.19 0.22 -2.33 16 20 C -0.07 -1.60 9.75 22.61 0.22 -1.38 16 21 C -0.07 -2.41 5.72 -21.40 -0.12 -2.53 16 22 C 0.28 10.27 15.32 88.32 1.35 11.62 16 23 N -0.48 -19.24 18.54 19.02 0.35 -18.89 16 24 C 0.01 0.27 6.30 22.86 0.14 0.41 16 25 H 0.23 6.83 7.80 -4.41 -0.03 6.80 16 26 H 0.10 4.58 6.44 -2.39 -0.02 4.56 16 27 H 0.09 3.24 6.52 -2.38 -0.02 3.22 16 28 H 0.27 13.43 8.31 -92.71 -0.77 12.66 16 29 H 0.14 4.14 6.25 -2.91 -0.02 4.12 16 30 H 0.18 2.79 8.06 -2.91 -0.02 2.77 16 31 H 0.16 2.30 8.06 -2.91 -0.02 2.28 16 32 H 0.17 1.92 8.06 -2.91 -0.02 1.90 16 33 H 0.15 2.78 8.06 -2.91 -0.02 2.75 16 34 H 0.09 3.71 7.05 -2.91 -0.02 3.69 16 Total: -1.00 -71.02 311.03 8.33 -62.69 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: 1.13 Total: 14.84 kcal Atomic # 6 Polarization: -10.67 SS G_CDS: 6.36 Total: -4.31 kcal Atomic # 7 Polarization: -86.60 SS G_CDS: -1.14 Total: -87.74 kcal Atomic # 8 Polarization: -30.97 SS G_CDS: -0.05 Total: -31.02 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -71.02 8.33 -62.69 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490971149.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.054 kcal (2) G-P(sol) polarization free energy of solvation -71.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.687 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds