Wall clock time and date at job start Tue Mar 31 2020 02:02:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46494 * 109.47255 * 355.05589 * 3 2 1 5 5 C 1.36807 * 120.00216 * 263.82803 * 4 3 2 6 6 H 1.08003 * 119.99886 * 201.50483 * 5 4 3 7 7 C 1.39076 * 120.00051 * 21.50293 * 5 4 3 8 8 N 1.31346 * 119.99981 * 5.39581 * 7 5 4 9 9 Si 1.86804 * 120.00131 * 185.40197 * 7 5 4 10 10 H 1.48503 * 109.46795 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47351 * 119.99816 * 9 7 5 12 12 H 1.48503 * 109.46924 * 240.00104 * 9 7 5 13 13 C 1.34777 * 119.99695 * 83.83059 * 4 3 2 14 14 O 1.21645 * 120.00178 * 4.79022 * 13 4 3 15 15 C 1.47294 * 119.99932 * 184.78562 * 13 4 3 16 16 C 1.39070 * 121.17784 * 51.54840 * 15 13 4 17 17 N 1.32164 * 121.30390 * 180.26730 * 16 15 13 18 18 C 1.31219 * 123.70363 * 359.72944 * 17 16 15 19 19 C 1.40387 * 120.93085 * 359.97438 * 18 17 16 20 20 C 1.40395 * 122.13576 * 180.02562 * 19 18 17 21 21 C 1.36244 * 119.48560 * 180.02562 * 20 19 18 22 22 C 1.39274 * 121.10466 * 359.97438 * 21 20 19 23 23 C 1.36467 * 120.94182 * 0.02562 * 22 21 20 24 24 C 1.39660 * 119.43703 * 359.97438 * 23 22 21 25 25 H 4.40639 * 5.51411 * 180.02562 * 4 1 2 26 26 H 1.09002 * 109.46628 * 235.05701 * 3 2 1 27 27 H 1.08999 * 109.46717 * 115.06175 * 3 2 1 28 28 H 0.96995 * 119.99927 * 180.02562 * 8 7 5 29 29 H 1.08002 * 119.35068 * 359.97438 * 16 15 13 30 30 H 1.08000 * 119.52972 * 179.97438 * 18 17 16 31 31 H 1.08004 * 120.25333 * 0.04761 * 20 19 18 32 32 H 1.08005 * 119.44569 * 179.97438 * 21 20 19 33 33 H 1.07995 * 119.53039 * 179.97438 * 22 21 20 34 34 H 1.07999 * 120.27672 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.3751 0.1190 5 6 3.4833 -1.8737 1.3445 6 1 4.1496 -2.7209 1.4132 7 6 2.9795 -1.2896 2.5017 8 7 2.0878 -0.3288 2.4178 9 14 3.5710 -1.8712 4.1754 10 1 4.5690 -2.9566 3.9979 11 1 4.1966 -0.7368 4.9011 12 1 2.4173 -2.3834 4.9576 13 6 3.2417 -2.1497 -0.9788 14 8 3.0157 -1.6809 -2.0783 15 6 3.6320 -3.5638 -0.8472 16 6 2.9718 -4.4141 0.0332 17 7 3.3234 -5.6821 0.1571 18 6 4.2969 -6.2377 -0.5251 19 6 5.0428 -5.4947 -1.4538 20 6 6.0890 -6.0635 -2.1975 21 6 6.7780 -5.2920 -3.0842 22 6 6.4617 -3.9479 -3.2661 23 6 5.4509 -3.3632 -2.5599 24 6 4.7242 -4.1253 -1.6425 25 1 -1.0498 -0.0004 -0.0002 26 1 3.0090 0.5895 0.8424 27 1 3.0091 0.4361 -0.9309 28 1 1.7367 0.0788 3.2248 29 1 2.1587 -4.0295 0.6310 30 1 4.5276 -7.2813 -0.3698 31 1 6.3454 -7.1046 -2.0678 32 1 7.5830 -5.7301 -3.6557 33 1 7.0248 -3.3598 -3.9755 34 1 5.2150 -2.3199 -2.7091 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490973275.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:02:34 Heat of formation + Delta-G solvation = 91.972887 kcal Electronic energy + Delta-G solvation = -21015.186432 eV Core-core repulsion = 17880.294769 eV Total energy + Delta-G solvation = -3134.891662 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.095 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.36273 -38.50790 -36.91997 -35.24671 -32.49408 -31.92771 -31.39274 -30.81127 -29.35310 -26.63533 -25.14060 -23.81673 -23.08894 -22.17129 -19.57044 -18.16129 -17.71765 -16.96721 -16.90860 -16.22929 -15.57513 -14.67282 -14.53431 -14.38501 -13.89810 -13.81987 -13.67138 -13.36591 -12.96266 -12.47316 -12.10810 -12.04353 -11.83449 -11.67120 -11.44710 -11.20123 -10.92986 -10.78770 -10.49936 -9.68312 -9.57282 -9.43492 -9.23694 -8.79241 -8.75876 -8.53260 -8.04223 -7.64127 -6.48747 -4.13310 0.59562 1.24005 2.10143 3.03025 3.14599 3.18483 3.34752 3.66957 3.77131 4.04008 4.22240 4.42698 4.65181 4.81786 4.87154 4.94889 5.06232 5.13895 5.21042 5.39668 5.54404 5.62204 5.85048 6.02896 6.09017 6.09128 6.29518 6.40521 6.59418 6.62184 6.80329 6.91293 7.01011 7.12048 7.14081 7.23983 7.50781 8.19048 8.38798 8.86211 8.91474 9.23126 9.63807 10.47325 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.017589 B = 0.006643 C = 0.005592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.492183 B = 4213.819628 C = 5005.837179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.276 4.276 2 C -0.097 4.097 3 C 0.237 3.763 4 N -0.421 5.421 5 C -0.337 4.337 6 H 0.100 0.900 7 C 0.040 3.960 8 N -0.856 5.856 9 Si 0.924 3.076 10 H -0.267 1.267 11 H -0.278 1.278 12 H -0.278 1.278 13 C 0.497 3.503 14 O -0.595 6.595 15 C -0.109 4.109 16 C 0.116 3.884 17 N -0.488 5.488 18 C 0.134 3.866 19 C -0.114 4.114 20 C -0.094 4.094 21 C -0.124 4.124 22 C -0.113 4.113 23 C -0.089 4.089 24 C -0.005 4.005 25 H 0.198 0.802 26 H 0.122 0.878 27 H 0.065 0.935 28 H 0.273 0.727 29 H 0.165 0.835 30 H 0.156 0.844 31 H 0.129 0.871 32 H 0.121 0.879 33 H 0.123 0.877 34 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.721 -6.753 -4.375 10.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.295 4.295 2 C -0.098 4.098 3 C 0.115 3.885 4 N -0.136 5.136 5 C -0.465 4.465 6 H 0.118 0.882 7 C -0.166 4.166 8 N -0.492 5.492 9 Si 0.750 3.250 10 H -0.191 1.191 11 H -0.204 1.204 12 H -0.203 1.203 13 C 0.286 3.714 14 O -0.482 6.482 15 C -0.114 4.114 16 C -0.028 4.028 17 N -0.195 5.195 18 C -0.038 4.038 19 C -0.116 4.116 20 C -0.114 4.114 21 C -0.142 4.142 22 C -0.132 4.132 23 C -0.107 4.107 24 C -0.010 4.010 25 H 0.215 0.785 26 H 0.139 0.861 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.182 0.818 30 H 0.174 0.826 31 H 0.147 0.853 32 H 0.139 0.861 33 H 0.141 0.859 34 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 5.960 -6.717 -4.094 9.869 hybrid contribution 0.377 0.249 0.526 0.694 sum 6.337 -6.467 -3.568 9.732 Atomic orbital electron populations 1.24221 0.95362 1.02184 1.07684 1.23107 0.94272 0.98170 0.94271 1.18274 0.84202 0.84641 1.01340 1.43600 1.53785 1.09904 1.06359 1.19751 1.28009 1.17052 0.81696 0.88220 1.25384 0.94858 0.96220 1.00123 1.69974 1.25871 1.23716 1.29686 0.85884 0.78884 0.78879 0.81352 1.19114 1.20367 1.20316 1.17663 0.84020 0.84844 0.84903 1.90668 1.57315 1.74112 1.26104 1.22036 0.96340 0.96137 0.96844 1.22812 0.98466 0.87414 0.94096 1.67069 1.15146 1.13601 1.23670 1.23014 0.90572 0.99307 0.90909 1.18930 0.98823 0.93897 0.99997 1.20884 0.94861 0.99670 0.96004 1.20830 1.00163 0.94249 0.98979 1.20964 0.97531 0.95110 0.99621 1.21113 0.94238 1.00918 0.94430 1.19010 0.94193 0.92556 0.95270 0.78462 0.86088 0.91717 0.91602 0.81781 0.82635 0.85325 0.86070 0.85899 0.84387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.28 -6.16 19.25 29.55 0.57 -5.59 16 2 C -0.10 -2.35 11.60 -37.12 -0.43 -2.78 16 3 C 0.24 5.67 5.09 -6.83 -0.03 5.64 16 4 N -0.42 -10.39 2.60 -119.21 -0.31 -10.70 16 5 C -0.34 -8.27 7.92 -15.02 -0.12 -8.39 16 6 H 0.10 2.44 6.33 -52.48 -0.33 2.10 16 7 C 0.04 0.97 5.22 -17.45 -0.09 0.88 16 8 N -0.86 -21.22 8.84 55.50 0.49 -20.73 16 9 Si 0.92 19.17 29.56 -169.99 -5.02 14.14 16 10 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 11 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 12 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 13 C 0.50 12.14 6.60 -12.58 -0.08 12.06 16 14 O -0.60 -15.58 15.48 5.24 0.08 -15.50 16 15 C -0.11 -2.38 4.92 -102.66 -0.51 -2.88 16 16 C 0.12 2.44 9.20 -17.10 -0.16 2.28 16 17 N -0.49 -9.21 10.22 -12.55 -0.13 -9.34 16 18 C 0.13 2.11 11.00 -17.00 -0.19 1.93 16 19 C -0.11 -1.86 5.74 -106.89 -0.61 -2.47 16 20 C -0.09 -1.20 9.82 -39.49 -0.39 -1.59 16 21 C -0.12 -1.51 9.94 -39.91 -0.40 -1.90 16 22 C -0.11 -1.57 9.96 -39.84 -0.40 -1.97 16 23 C -0.09 -1.58 9.34 -39.69 -0.37 -1.95 16 24 C 0.00 -0.09 5.90 -104.74 -0.62 -0.71 16 25 H 0.20 3.60 7.80 -54.10 -0.42 3.18 16 26 H 0.12 2.92 6.18 -51.93 -0.32 2.60 16 27 H 0.06 1.49 7.55 -51.93 -0.39 1.09 16 28 H 0.27 6.48 8.31 -40.82 -0.34 6.14 16 29 H 0.17 3.59 7.52 -52.49 -0.39 3.20 16 30 H 0.16 1.79 8.06 -52.49 -0.42 1.37 16 31 H 0.13 1.18 8.06 -52.48 -0.42 0.76 16 32 H 0.12 1.08 8.06 -52.48 -0.42 0.65 16 33 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 34 H 0.14 2.64 6.67 -52.49 -0.35 2.29 16 LS Contribution 302.12 15.07 4.55 4.55 Total: -1.00 -29.37 302.12 -7.20 -36.57 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -3.04 Total: 8.45 kcal Atomic # 6 Polarization: -3.62 SS G_CDS: -3.82 Total: -7.45 kcal Atomic # 7 Polarization: -40.82 SS G_CDS: 0.05 Total: -40.76 kcal Atomic # 8 Polarization: -15.58 SS G_CDS: 0.08 Total: -15.50 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -5.02 Total: 14.14 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -29.37 -7.20 -36.57 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490973275.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.541 kcal (2) G-P(sol) polarization free energy of solvation -29.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds