Wall clock time and date at job start Tue Mar 31 2020 02:02:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46494 * 109.47255 * 355.05589 * 3 2 1 5 5 C 1.36807 * 120.00216 * 263.82803 * 4 3 2 6 6 H 1.08003 * 119.99886 * 201.50483 * 5 4 3 7 7 C 1.39076 * 120.00051 * 21.50293 * 5 4 3 8 8 N 1.31346 * 119.99981 * 5.39581 * 7 5 4 9 9 Si 1.86804 * 120.00131 * 185.40197 * 7 5 4 10 10 H 1.48503 * 109.46795 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47351 * 119.99816 * 9 7 5 12 12 H 1.48503 * 109.46924 * 240.00104 * 9 7 5 13 13 C 1.34777 * 119.99695 * 83.83059 * 4 3 2 14 14 O 1.21645 * 120.00178 * 4.79022 * 13 4 3 15 15 C 1.47294 * 119.99932 * 184.78562 * 13 4 3 16 16 C 1.39070 * 121.17784 * 51.54840 * 15 13 4 17 17 N 1.32164 * 121.30390 * 180.26730 * 16 15 13 18 18 C 1.31219 * 123.70363 * 359.72944 * 17 16 15 19 19 C 1.40387 * 120.93085 * 359.97438 * 18 17 16 20 20 C 1.40395 * 122.13576 * 180.02562 * 19 18 17 21 21 C 1.36244 * 119.48560 * 180.02562 * 20 19 18 22 22 C 1.39274 * 121.10466 * 359.97438 * 21 20 19 23 23 C 1.36467 * 120.94182 * 0.02562 * 22 21 20 24 24 C 1.39660 * 119.43703 * 359.97438 * 23 22 21 25 25 H 4.40639 * 5.51411 * 180.02562 * 4 1 2 26 26 H 1.09002 * 109.46628 * 235.05701 * 3 2 1 27 27 H 1.08999 * 109.46717 * 115.06175 * 3 2 1 28 28 H 0.96995 * 119.99927 * 180.02562 * 8 7 5 29 29 H 1.08002 * 119.35068 * 359.97438 * 16 15 13 30 30 H 1.08000 * 119.52972 * 179.97438 * 18 17 16 31 31 H 1.08004 * 120.25333 * 0.04761 * 20 19 18 32 32 H 1.08005 * 119.44569 * 179.97438 * 21 20 19 33 33 H 1.07995 * 119.53039 * 179.97438 * 22 21 20 34 34 H 1.07999 * 120.27672 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.3751 0.1190 5 6 3.4833 -1.8737 1.3445 6 1 4.1496 -2.7209 1.4132 7 6 2.9795 -1.2896 2.5017 8 7 2.0878 -0.3288 2.4178 9 14 3.5710 -1.8712 4.1754 10 1 4.5690 -2.9566 3.9979 11 1 4.1966 -0.7368 4.9011 12 1 2.4173 -2.3834 4.9576 13 6 3.2417 -2.1497 -0.9788 14 8 3.0157 -1.6809 -2.0783 15 6 3.6320 -3.5638 -0.8472 16 6 2.9718 -4.4141 0.0332 17 7 3.3234 -5.6821 0.1571 18 6 4.2969 -6.2377 -0.5251 19 6 5.0428 -5.4947 -1.4538 20 6 6.0890 -6.0635 -2.1975 21 6 6.7780 -5.2920 -3.0842 22 6 6.4617 -3.9479 -3.2661 23 6 5.4509 -3.3632 -2.5599 24 6 4.7242 -4.1253 -1.6425 25 1 -1.0498 -0.0004 -0.0002 26 1 3.0090 0.5895 0.8424 27 1 3.0091 0.4361 -0.9309 28 1 1.7367 0.0788 3.2248 29 1 2.1587 -4.0295 0.6310 30 1 4.5276 -7.2813 -0.3698 31 1 6.3454 -7.1046 -2.0678 32 1 7.5830 -5.7301 -3.6557 33 1 7.0248 -3.3598 -3.9755 34 1 5.2150 -2.3199 -2.7091 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490973275.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:02:34 Heat of formation + Delta-G solvation = 75.215510 kcal Electronic energy + Delta-G solvation = -21015.913086 eV Core-core repulsion = 17880.294769 eV Total energy + Delta-G solvation = -3135.618317 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.095 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.75304 -40.23822 -38.19925 -37.13106 -34.05671 -33.71571 -33.09599 -32.06233 -30.70261 -28.43877 -26.92526 -25.25937 -24.38947 -23.49442 -21.30541 -19.87941 -19.15156 -18.54615 -18.27375 -18.02774 -16.91219 -16.43553 -16.16952 -15.86959 -15.51911 -15.21505 -15.06523 -14.70562 -14.54263 -14.01445 -13.97514 -13.53917 -13.33578 -13.09764 -12.90947 -12.78590 -12.65822 -12.19640 -12.09169 -11.41708 -11.30682 -10.98108 -10.82715 -10.62522 -10.23165 -10.00534 -9.93039 -8.98582 -8.33335 -6.05101 -0.69245 -0.02999 0.81220 1.36430 1.42059 1.53837 1.81760 1.97212 2.18284 2.27070 2.36271 2.97000 3.00598 3.17652 3.51115 3.66035 3.82192 3.84204 3.90180 4.02942 4.25775 4.36465 4.42057 4.63203 4.73863 4.81491 4.84633 5.00081 5.10454 5.19482 5.31617 5.35663 5.48123 5.55860 5.64068 5.68001 5.97503 6.30612 6.96755 7.00346 7.06831 7.36086 7.77101 8.63019 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.017589 B = 0.006643 C = 0.005592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.492183 B = 4213.819628 C = 5005.837179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C -0.145 4.145 3 C 0.240 3.760 4 N -0.431 5.431 5 C -0.349 4.349 6 H 0.095 0.905 7 C 0.005 3.995 8 N -0.877 5.877 9 Si 0.988 3.012 10 H -0.267 1.267 11 H -0.271 1.271 12 H -0.278 1.278 13 C 0.493 3.507 14 O -0.627 6.627 15 C -0.154 4.154 16 C 0.116 3.884 17 N -0.514 5.514 18 C 0.161 3.839 19 C -0.132 4.132 20 C -0.072 4.072 21 C -0.120 4.120 22 C -0.087 4.087 23 C -0.137 4.137 24 C -0.023 4.023 25 H 0.237 0.763 26 H 0.114 0.886 27 H 0.060 0.940 28 H 0.274 0.726 29 H 0.139 0.861 30 H 0.211 0.789 31 H 0.181 0.819 32 H 0.171 0.829 33 H 0.151 0.849 34 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.913 -10.181 -4.797 14.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.276 4.276 2 C -0.146 4.146 3 C 0.118 3.882 4 N -0.147 5.147 5 C -0.476 4.476 6 H 0.112 0.888 7 C -0.199 4.199 8 N -0.514 5.514 9 Si 0.811 3.189 10 H -0.191 1.191 11 H -0.196 1.196 12 H -0.203 1.203 13 C 0.283 3.717 14 O -0.516 6.516 15 C -0.158 4.158 16 C -0.027 4.027 17 N -0.222 5.222 18 C -0.011 4.011 19 C -0.134 4.134 20 C -0.091 4.091 21 C -0.138 4.138 22 C -0.106 4.106 23 C -0.155 4.155 24 C -0.028 4.028 25 H 0.253 0.747 26 H 0.131 0.869 27 H 0.078 0.922 28 H 0.084 0.916 29 H 0.156 0.844 30 H 0.228 0.772 31 H 0.198 0.802 32 H 0.188 0.812 33 H 0.169 0.831 34 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 8.149 -10.129 -4.512 13.761 hybrid contribution -0.183 1.177 0.478 1.284 sum 7.967 -8.952 -4.034 12.644 Atomic orbital electron populations 1.25153 0.96366 1.00306 1.05751 1.23464 0.95056 0.99990 0.96082 1.18160 0.84740 0.84651 1.00636 1.43759 1.54053 1.10130 1.06719 1.19810 1.28450 1.17380 0.81989 0.88760 1.26111 0.94807 0.96181 1.02815 1.70085 1.26596 1.24386 1.30345 0.84941 0.78205 0.78440 0.77300 1.19084 1.19592 1.20340 1.18169 0.83124 0.86097 0.84272 1.90598 1.58611 1.75260 1.27134 1.21851 0.99416 0.94636 0.99947 1.22428 0.98020 0.88605 0.93669 1.67120 1.17281 1.12307 1.25473 1.23953 0.87823 1.01098 0.88181 1.19298 1.00453 0.92490 1.01164 1.21474 0.92127 1.01905 0.93628 1.21381 1.00800 0.92921 0.98691 1.21405 0.95008 0.96542 0.97648 1.20985 0.97296 0.99995 0.97269 1.19244 0.93792 0.94487 0.95302 0.74650 0.86877 0.92156 0.91550 0.84358 0.77226 0.80165 0.81174 0.83122 0.87710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -11.70 19.25 74.32 1.43 -10.27 16 2 C -0.14 -7.37 11.60 31.13 0.36 -7.01 16 3 C 0.24 12.36 5.09 84.58 0.43 12.79 16 4 N -0.43 -22.90 2.60 -649.32 -1.69 -24.59 16 5 C -0.35 -18.11 7.92 84.12 0.67 -17.44 16 6 H 0.09 4.89 6.33 -2.91 -0.02 4.87 16 7 C 0.00 0.23 5.22 84.97 0.44 0.67 16 8 N -0.88 -45.13 8.84 21.68 0.19 -44.94 16 9 Si 0.99 40.20 29.56 68.60 2.03 42.22 16 10 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 11 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 12 H -0.28 -11.25 7.11 99.48 0.71 -10.55 16 13 C 0.49 26.09 6.60 86.63 0.57 26.66 16 14 O -0.63 -35.64 15.48 -4.17 -0.06 -35.70 16 15 C -0.15 -7.15 4.92 -18.60 -0.09 -7.24 16 16 C 0.12 5.11 9.20 84.84 0.78 5.89 16 17 N -0.51 -19.16 10.22 -193.63 -1.98 -21.14 16 18 C 0.16 4.58 11.00 85.31 0.94 5.51 16 19 C -0.13 -3.92 5.74 -21.34 -0.12 -4.04 16 20 C -0.07 -1.40 9.82 22.33 0.22 -1.18 16 21 C -0.12 -2.23 9.94 22.05 0.22 -2.01 16 22 C -0.09 -2.18 9.96 22.11 0.22 -1.96 16 23 C -0.14 -4.99 9.34 22.20 0.21 -4.78 16 24 C -0.02 -0.90 5.90 -19.94 -0.12 -1.01 16 25 H 0.24 8.33 7.80 -4.43 -0.03 8.30 16 26 H 0.11 5.88 6.18 -2.39 -0.01 5.86 16 27 H 0.06 3.04 7.55 -2.39 -0.02 3.02 16 28 H 0.27 13.36 8.31 -92.71 -0.77 12.59 16 29 H 0.14 6.60 7.52 -2.91 -0.02 6.57 16 30 H 0.21 3.52 8.06 -2.91 -0.02 3.49 16 31 H 0.18 1.72 8.06 -2.91 -0.02 1.70 16 32 H 0.17 1.64 8.06 -2.91 -0.02 1.61 16 33 H 0.15 2.86 8.06 -2.91 -0.02 2.83 16 34 H 0.10 4.40 6.67 -2.91 -0.02 4.38 16 Total: -1.00 -70.58 302.12 5.78 -64.81 By element: Atomic # 1 Polarization: 23.63 SS G_CDS: 1.13 Total: 24.76 kcal Atomic # 6 Polarization: -11.57 SS G_CDS: 6.16 Total: -5.41 kcal Atomic # 7 Polarization: -87.20 SS G_CDS: -3.47 Total: -90.67 kcal Atomic # 8 Polarization: -35.64 SS G_CDS: -0.06 Total: -35.70 kcal Atomic # 14 Polarization: 40.20 SS G_CDS: 2.03 Total: 42.22 kcal Total: -70.58 5.78 -64.81 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490973275.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.022 kcal (2) G-P(sol) polarization free energy of solvation -70.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.806 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds