Wall clock time and date at job start Tue Mar 31 2020 01:58:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47086 * 2 1 4 4 H 1.08996 * 109.46388 * 55.00693 * 3 2 1 5 5 C 1.50695 * 109.46847 * 175.00059 * 3 2 1 6 6 H 1.08000 * 120.00159 * 120.00623 * 5 3 2 7 7 C 1.37881 * 120.00224 * 300.00215 * 5 3 2 8 8 N 1.31510 * 119.99839 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00070 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47030 * 60.00267 * 9 7 5 11 11 H 1.48501 * 109.47285 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47322 * 300.00301 * 9 7 5 13 13 N 1.46491 * 109.47337 * 295.00248 * 3 2 1 14 14 C 1.34774 * 119.99964 * 84.99998 * 13 3 2 15 15 O 1.21782 * 120.00130 * 359.97438 * 14 13 3 16 16 C 1.41558 * 120.00050 * 180.02562 * 14 13 3 17 17 C 1.35559 * 119.99991 * 187.05633 * 16 14 13 18 18 C 1.41730 * 119.99788 * 9.46612 * 17 16 14 19 19 S 1.76211 * 126.19158 * 48.17148 * 18 17 16 20 20 C 1.70915 * 90.39124 * 179.73265 * 19 18 17 21 21 N 1.29356 * 110.65018 * 0.02562 * 20 19 18 22 22 C 1.30959 * 117.49346 * 359.97438 * 21 20 19 23 23 C 1.50698 * 123.07370 * 180.02562 * 22 21 20 24 24 H 1.08998 * 109.47381 * 299.99659 * 1 2 3 25 25 H 1.09004 * 109.47237 * 59.99636 * 1 2 3 26 26 H 1.09006 * 109.47223 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.46824 * 240.00472 * 2 1 3 28 28 H 1.08994 * 109.47033 * 120.00881 * 2 1 3 29 29 H 0.97002 * 119.99599 * 179.97438 * 8 7 5 30 30 H 0.96997 * 120.00268 * 264.99939 * 13 3 2 31 31 H 1.07996 * 119.99940 * 7.04775 * 16 14 13 32 32 H 1.07993 * 120.00305 * 189.47229 * 17 16 14 33 33 H 1.08001 * 124.67466 * 180.02562 * 20 19 18 34 34 H 1.08997 * 109.47339 * 270.00389 * 23 22 21 35 35 H 1.08997 * 109.47529 * 30.00709 * 23 22 21 36 36 H 1.09004 * 109.46839 * 150.00538 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9814 0.8419 5 6 3.5418 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4062 0.3365 2.1728 9 14 6.0049 0.8811 1.3817 10 1 6.4994 2.2814 1.3822 11 1 6.3979 0.2165 2.6502 12 1 6.5975 0.1473 0.2347 13 7 1.6524 2.0975 -1.2517 14 6 0.4351 2.6644 -1.3668 15 8 -0.3428 2.6318 -0.4304 16 6 0.0604 3.2969 -2.5765 17 6 -1.1026 3.9899 -2.6471 18 6 -1.8436 4.2525 -1.4678 19 16 -1.2023 4.8936 0.0430 20 6 -2.7619 4.8427 0.7403 21 7 -3.6262 4.3879 -0.1079 22 6 -3.1899 4.0589 -1.2981 23 6 -4.0862 3.5175 -2.3819 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 3.8294 -0.0620 2.9493 30 1 2.2719 2.1233 -1.9977 31 1 0.7011 3.2275 -3.4431 32 1 -1.4644 4.3417 -3.6018 33 1 -2.9939 5.1481 1.7499 34 1 -4.1235 2.4303 -2.3132 35 1 -5.0902 3.9239 -2.2599 36 1 -3.6931 3.8067 -3.3566 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492664843.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:58:40 Heat of formation + Delta-G solvation = 28.309225 kcal Electronic energy + Delta-G solvation = -19840.492594 eV Core-core repulsion = 16838.284219 eV Total energy + Delta-G solvation = -3002.208375 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.72594 -38.99011 -35.43844 -33.74642 -32.41406 -31.24207 -30.61154 -27.70630 -26.59030 -24.70371 -23.40045 -22.26996 -19.97115 -19.40424 -18.84829 -17.59090 -16.79741 -16.14174 -15.47595 -14.90828 -14.70345 -14.39206 -14.20353 -13.39279 -13.24919 -13.11750 -12.65797 -12.51658 -12.32103 -12.20625 -12.02828 -11.52696 -11.24339 -11.15836 -10.99752 -10.82935 -10.36759 -10.16261 -9.99552 -9.63660 -9.30541 -9.08571 -9.01711 -8.52977 -8.33854 -7.90200 -7.53640 -6.12860 -4.22379 0.49444 1.68524 2.03455 2.28775 3.11770 3.24289 3.30005 3.30897 4.03268 4.22073 4.46115 4.53574 5.10289 5.18365 5.27911 5.33995 5.40939 5.68175 5.71857 5.81730 5.96870 6.29132 6.33544 6.40654 6.48029 6.57838 6.68675 7.06121 7.21907 7.38173 7.46944 7.62152 7.74689 7.90636 8.08102 8.18375 8.68142 8.77451 9.14548 9.45198 10.92274 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.027718 B = 0.004766 C = 0.004686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.939319 B = 5873.466115 C = 5974.196413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.126 4.126 3 C 0.271 3.729 4 H 0.050 0.950 5 C -0.535 4.535 6 H 0.059 0.941 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.700 5.700 14 C 0.516 3.484 15 O -0.539 6.539 16 C -0.196 4.196 17 C -0.006 4.006 18 C -0.208 4.208 19 S 0.248 5.752 20 C -0.022 4.022 21 N -0.481 5.481 22 C 0.076 3.924 23 C -0.073 4.073 24 H 0.048 0.952 25 H 0.039 0.961 26 H 0.020 0.980 27 H 0.029 0.971 28 H 0.098 0.902 29 H 0.265 0.735 30 H 0.387 0.613 31 H 0.129 0.871 32 H 0.136 0.864 33 H 0.189 0.811 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.446 7.924 -9.024 14.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.165 4.165 3 C 0.169 3.831 4 H 0.068 0.932 5 C -0.574 4.574 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.727 3.273 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.346 5.346 14 C 0.304 3.696 15 O -0.421 6.421 16 C -0.220 4.220 17 C -0.029 4.029 18 C -0.330 4.330 19 S 0.507 5.493 20 C -0.314 4.314 21 N -0.196 5.196 22 C -0.062 4.062 23 C -0.132 4.132 24 H 0.067 0.933 25 H 0.058 0.942 26 H 0.039 0.961 27 H 0.048 0.952 28 H 0.116 0.884 29 H 0.075 0.925 30 H 0.219 0.781 31 H 0.147 0.853 32 H 0.154 0.846 33 H 0.206 0.794 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.506 8.103 -7.449 13.911 hybrid contribution 0.901 -0.610 -0.814 1.359 sum -7.605 7.494 -8.263 13.501 Atomic orbital electron populations 1.21816 0.98277 0.97841 1.01237 1.21921 0.92606 0.99830 1.02125 1.18748 0.94046 0.89148 0.81135 0.93238 1.21202 0.90806 1.39093 1.06253 0.92234 1.24874 0.98505 0.94804 0.95400 1.69885 1.35188 1.37506 1.09356 0.86539 0.84986 0.78298 0.77452 1.20195 1.21142 1.20196 1.46534 1.14527 1.55133 1.18417 1.17126 0.83255 0.81099 0.88107 1.90909 1.50872 1.59373 1.40949 1.22504 0.98507 1.01221 0.99800 1.20384 0.92558 0.94705 0.95220 1.23424 0.96808 1.12878 0.99914 1.83794 1.10330 1.50732 1.04414 1.28262 0.93560 1.05555 1.04049 1.65769 1.37182 1.14594 1.02025 1.20729 0.90651 1.01629 0.93230 1.20262 0.97894 1.00904 0.94109 0.93289 0.94185 0.96136 0.95202 0.88416 0.92533 0.78063 0.85288 0.84625 0.79379 0.90869 0.91057 0.91177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.03 8.51 37.16 0.32 -2.71 16 2 C -0.13 -3.05 5.45 -26.73 -0.15 -3.20 16 3 C 0.27 6.65 2.24 -69.09 -0.15 6.50 16 4 H 0.05 1.41 7.58 -51.93 -0.39 1.01 16 5 C -0.54 -13.88 8.73 -34.44 -0.30 -14.18 16 6 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.49 11.29 55.43 0.63 -23.86 16 9 Si 0.90 20.38 29.54 -169.99 -5.02 15.36 16 10 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 11 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 12 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 13 N -0.70 -14.00 5.01 -57.86 -0.29 -14.29 16 14 C 0.52 9.69 5.73 -15.00 -0.09 9.61 16 15 O -0.54 -11.49 8.92 5.12 0.05 -11.45 16 16 C -0.20 -2.78 9.83 -39.27 -0.39 -3.17 16 17 C -0.01 -0.08 9.18 -39.21 -0.36 -0.44 16 18 C -0.21 -3.21 4.52 -38.67 -0.17 -3.38 16 19 S 0.25 3.91 19.86 -107.50 -2.13 1.78 16 20 C -0.02 -0.33 12.20 51.72 0.63 0.30 16 21 N -0.48 -7.97 10.49 -11.23 -0.12 -8.09 16 22 C 0.08 1.17 6.85 -83.39 -0.57 0.60 16 23 C -0.07 -0.86 10.09 36.00 0.36 -0.49 16 24 H 0.05 1.18 7.84 -51.93 -0.41 0.77 16 25 H 0.04 0.88 5.64 -51.93 -0.29 0.59 16 26 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.03 0.69 8.14 -51.92 -0.42 0.27 16 28 H 0.10 2.63 5.95 -51.93 -0.31 2.32 16 29 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 30 H 0.39 6.76 8.50 -40.82 -0.35 6.42 16 31 H 0.13 1.41 8.06 -52.49 -0.42 0.98 16 32 H 0.14 1.25 7.84 -52.49 -0.41 0.84 16 33 H 0.19 2.24 8.06 -52.49 -0.42 1.82 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.07 0.65 7.48 -51.93 -0.39 0.26 16 LS Contribution 310.61 15.07 4.68 4.68 Total: -1.00 -30.76 310.61 -7.80 -38.56 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -4.63 Total: 6.18 kcal Atomic # 6 Polarization: -7.91 SS G_CDS: -0.96 Total: -8.87 kcal Atomic # 7 Polarization: -46.46 SS G_CDS: 0.22 Total: -46.24 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: 0.05 Total: -11.45 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Atomic # 16 Polarization: 3.91 SS G_CDS: -2.13 Total: 1.78 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -30.76 -7.80 -38.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492664843.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.870 kcal (2) G-P(sol) polarization free energy of solvation -30.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds