Wall clock time and date at job start Tue Mar 31 2020 01:58:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47518 * 2 1 4 4 H 1.09001 * 109.46742 * 303.47755 * 3 2 1 5 5 C 1.50695 * 109.47330 * 183.48353 * 3 2 1 6 6 H 1.08001 * 119.99840 * 274.33036 * 5 3 2 7 7 C 1.37882 * 120.00125 * 94.32886 * 5 3 2 8 8 N 1.31519 * 119.99842 * 183.69676 * 7 5 3 9 9 Si 1.86795 * 120.00089 * 3.69989 * 7 5 3 10 10 H 1.48504 * 109.47233 * 93.43569 * 9 7 5 11 11 H 1.48498 * 109.47321 * 213.43400 * 9 7 5 12 12 H 1.48500 * 109.46964 * 333.43573 * 9 7 5 13 13 N 1.46500 * 109.47254 * 63.47847 * 3 2 1 14 14 C 1.34775 * 120.00047 * 275.00156 * 13 3 2 15 15 O 1.21776 * 119.99864 * 0.02562 * 14 13 3 16 16 C 1.41550 * 119.99817 * 179.97438 * 14 13 3 17 17 C 1.35555 * 119.99875 * 174.65448 * 16 14 13 18 18 C 1.41722 * 120.00056 * 350.08433 * 17 16 14 19 19 S 1.76209 * 126.19325 * 312.83783 * 18 17 16 20 20 C 1.70909 * 90.39222 * 179.97438 * 19 18 17 21 21 N 1.29359 * 110.65266 * 359.97438 * 20 19 18 22 22 C 1.30954 * 117.48953 * 359.74917 * 21 20 19 23 23 C 1.50700 * 123.07270 * 180.30523 * 22 21 20 24 24 H 1.09000 * 109.46916 * 60.00130 * 1 2 3 25 25 H 1.08995 * 109.47323 * 300.00614 * 1 2 3 26 26 H 1.08997 * 109.47233 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46916 * 119.99870 * 2 1 3 28 28 H 1.09006 * 109.47320 * 239.99904 * 2 1 3 29 29 H 0.96999 * 119.99803 * 179.97438 * 8 7 5 30 30 H 0.97001 * 119.99342 * 95.00720 * 13 3 2 31 31 H 1.08001 * 120.00068 * 354.65419 * 16 14 13 32 32 H 1.07999 * 120.00004 * 170.08320 * 17 16 14 33 33 H 1.08002 * 124.67620 * 180.02562 * 20 19 18 34 34 H 1.08997 * 109.46882 * 270.15320 * 23 22 21 35 35 H 1.08994 * 109.47766 * 30.16137 * 23 22 21 36 36 H 1.09002 * 109.46745 * 150.15916 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6267 1.9739 -0.8572 5 6 3.5446 1.4432 -0.0863 6 1 4.1370 1.3540 0.8123 7 6 4.1647 1.5579 -1.3125 8 7 5.4753 1.4856 -1.3958 9 14 3.1435 1.8159 -2.8551 10 1 3.0304 3.2696 -3.1365 11 1 3.8002 1.1393 -4.0024 12 1 1.7881 1.2439 -2.6529 13 7 1.6214 2.1085 1.2359 14 6 0.4017 2.6763 1.3155 15 8 -0.3525 2.6353 0.3603 16 6 -0.0029 3.3194 2.5098 17 6 -1.1837 3.9836 2.5553 18 6 -1.9126 4.2157 1.3623 19 16 -1.2591 4.8341 -0.1528 20 6 -2.8077 4.7455 -0.8705 21 7 -3.6774 4.2960 -0.0249 22 6 -3.2524 3.9936 1.1762 23 6 -4.1546 3.4545 2.2563 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8933 -0.5138 0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 5.9115 1.5658 -2.2584 30 1 2.2222 2.1408 1.9968 31 1 0.6291 3.2808 3.3847 32 1 -1.5689 4.3360 3.5007 33 1 -3.0294 5.0253 -1.8898 34 1 -4.5735 4.2834 2.8269 35 1 -4.9625 2.8808 1.8022 36 1 -3.5800 2.8095 2.9211 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492664844.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:58:42 Heat of formation + Delta-G solvation = 29.012129 kcal Electronic energy + Delta-G solvation = -19971.762520 eV Core-core repulsion = 16969.584626 eV Total energy + Delta-G solvation = -3002.177894 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.83828 -39.11534 -35.60493 -33.81479 -32.40248 -31.64641 -30.81702 -28.00199 -26.90855 -24.76918 -23.27110 -22.37446 -20.04946 -19.61033 -18.95606 -17.70121 -17.03377 -16.37190 -15.68010 -15.05635 -14.78132 -14.62325 -13.97793 -13.56244 -13.32800 -13.26355 -12.79543 -12.63379 -12.43931 -12.36047 -12.20064 -11.89945 -11.84935 -11.21772 -10.99156 -10.69369 -10.65954 -10.15704 -9.97606 -9.84874 -9.37229 -9.22450 -9.12402 -8.75270 -8.47135 -7.98152 -7.65627 -6.25635 -4.29105 0.39741 1.62153 1.97246 2.21269 3.05063 3.22378 3.31721 3.39386 3.91369 4.18825 4.30177 4.46682 5.04513 5.10620 5.20948 5.30540 5.36881 5.58979 5.64001 5.76367 5.90955 6.05982 6.09043 6.21129 6.23354 6.30670 6.51072 6.66802 6.79424 6.97826 7.01882 7.29262 7.36456 7.56451 8.01372 8.13052 8.56898 8.75336 8.98399 9.36812 10.86184 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.023375 B = 0.005807 C = 0.005399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.590967 B = 4820.461295 C = 5185.161744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.124 4.124 3 C 0.235 3.765 4 H 0.054 0.946 5 C -0.531 4.531 6 H 0.078 0.922 7 C 0.082 3.918 8 N -0.889 5.889 9 Si 0.869 3.131 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.255 1.255 13 N -0.693 5.693 14 C 0.516 3.484 15 O -0.544 6.544 16 C -0.196 4.196 17 C -0.003 4.003 18 C -0.211 4.211 19 S 0.251 5.749 20 C -0.024 4.024 21 N -0.481 5.481 22 C 0.077 3.923 23 C -0.073 4.073 24 H 0.050 0.950 25 H 0.049 0.951 26 H 0.027 0.973 27 H 0.050 0.950 28 H 0.058 0.942 29 H 0.267 0.733 30 H 0.392 0.608 31 H 0.132 0.868 32 H 0.137 0.863 33 H 0.189 0.811 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.638 6.151 7.330 16.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.163 4.163 3 C 0.133 3.867 4 H 0.072 0.928 5 C -0.569 4.569 6 H 0.096 0.904 7 C -0.123 4.123 8 N -0.526 5.526 9 Si 0.696 3.304 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.179 1.179 13 N -0.340 5.340 14 C 0.305 3.695 15 O -0.427 6.427 16 C -0.221 4.221 17 C -0.026 4.026 18 C -0.334 4.334 19 S 0.511 5.489 20 C -0.317 4.317 21 N -0.196 5.196 22 C -0.061 4.061 23 C -0.133 4.133 24 H 0.069 0.931 25 H 0.068 0.932 26 H 0.046 0.954 27 H 0.069 0.931 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.225 0.775 31 H 0.149 0.851 32 H 0.155 0.845 33 H 0.206 0.794 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -13.511 6.421 5.811 16.048 hybrid contribution -0.449 -0.367 0.073 0.585 sum -13.961 6.054 5.884 16.315 Atomic orbital electron populations 1.21873 0.97333 0.98638 1.02008 1.22057 0.93671 0.99510 1.01032 1.19200 0.94967 0.88906 0.83650 0.92833 1.21026 0.88576 1.51962 0.95295 0.90442 1.24927 0.94770 0.93671 0.98887 1.69886 1.08361 1.48681 1.25641 0.86943 0.81470 0.79153 0.82858 1.19997 1.21113 1.17950 1.46625 1.14801 1.54516 1.18061 1.17225 0.83023 0.81033 0.88208 1.90900 1.52655 1.59834 1.39349 1.22483 0.98268 1.01423 0.99921 1.20405 0.92586 0.94473 0.95101 1.23447 0.96953 1.13149 0.99804 1.83815 1.10538 1.51090 1.03432 1.28286 0.93608 1.05693 1.04102 1.65776 1.36804 1.14918 1.02080 1.20745 0.90839 1.01570 0.92983 1.20269 0.97935 1.00430 0.94629 0.93114 0.93209 0.95385 0.93122 0.92359 0.92283 0.77465 0.85057 0.84535 0.79418 0.91073 0.90887 0.91024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.82 8.48 37.16 0.32 -2.51 16 2 C -0.12 -2.66 5.60 -26.73 -0.15 -2.81 16 3 C 0.24 5.39 1.85 -69.09 -0.13 5.26 16 4 H 0.05 1.34 4.63 -51.93 -0.24 1.10 16 5 C -0.53 -13.94 9.05 -34.44 -0.31 -14.25 16 6 H 0.08 2.15 8.06 -52.49 -0.42 1.73 16 7 C 0.08 2.25 5.47 -17.82 -0.10 2.15 16 8 N -0.89 -25.90 13.96 55.43 0.77 -25.13 16 9 Si 0.87 21.14 27.20 -169.99 -4.62 16.52 16 10 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.26 -6.13 6.49 56.52 0.37 -5.77 16 13 N -0.69 -13.28 4.99 -57.86 -0.29 -13.57 16 14 C 0.52 9.23 5.69 -15.00 -0.09 9.14 16 15 O -0.54 -10.97 8.76 5.12 0.04 -10.92 16 16 C -0.20 -2.67 9.83 -39.28 -0.39 -3.05 16 17 C 0.00 -0.04 9.12 -39.21 -0.36 -0.40 16 18 C -0.21 -3.14 4.57 -38.67 -0.18 -3.31 16 19 S 0.25 3.88 19.73 -107.50 -2.12 1.76 16 20 C -0.02 -0.36 12.20 51.72 0.63 0.27 16 21 N -0.48 -7.70 10.49 -11.23 -0.12 -7.82 16 22 C 0.08 1.14 6.85 -83.39 -0.57 0.57 16 23 C -0.07 -0.82 10.09 36.01 0.36 -0.46 16 24 H 0.05 1.09 7.75 -51.93 -0.40 0.69 16 25 H 0.05 0.99 5.68 -51.93 -0.30 0.69 16 26 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.06 1.30 8.11 -51.93 -0.42 0.88 16 29 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 30 H 0.39 6.68 8.55 -40.82 -0.35 6.33 16 31 H 0.13 1.37 8.06 -52.49 -0.42 0.94 16 32 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 33 H 0.19 2.15 8.06 -52.49 -0.42 1.73 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.07 0.72 7.65 -51.93 -0.40 0.33 16 LS Contribution 310.10 15.07 4.67 4.67 Total: -1.00 -31.56 310.10 -7.27 -38.83 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -4.66 Total: 5.04 kcal Atomic # 6 Polarization: -8.43 SS G_CDS: -0.95 Total: -9.38 kcal Atomic # 7 Polarization: -46.89 SS G_CDS: 0.37 Total: -46.52 kcal Atomic # 8 Polarization: -10.97 SS G_CDS: 0.04 Total: -10.92 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.62 Total: 16.52 kcal Atomic # 16 Polarization: 3.88 SS G_CDS: -2.12 Total: 1.76 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -31.56 -7.27 -38.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492664844.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.842 kcal (2) G-P(sol) polarization free energy of solvation -31.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds