Wall clock time and date at job start Tue Mar 31 2020 01:58:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47518 * 2 1 4 4 H 1.09001 * 109.46742 * 303.47755 * 3 2 1 5 5 C 1.50695 * 109.47330 * 183.48353 * 3 2 1 6 6 H 1.08001 * 119.99840 * 274.33036 * 5 3 2 7 7 C 1.37882 * 120.00125 * 94.32886 * 5 3 2 8 8 N 1.31519 * 119.99842 * 183.69676 * 7 5 3 9 9 Si 1.86795 * 120.00089 * 3.69989 * 7 5 3 10 10 H 1.48504 * 109.47233 * 93.43569 * 9 7 5 11 11 H 1.48498 * 109.47321 * 213.43400 * 9 7 5 12 12 H 1.48500 * 109.46964 * 333.43573 * 9 7 5 13 13 N 1.46500 * 109.47254 * 63.47847 * 3 2 1 14 14 C 1.34775 * 120.00047 * 275.00156 * 13 3 2 15 15 O 1.21776 * 119.99864 * 0.02562 * 14 13 3 16 16 C 1.41550 * 119.99817 * 179.97438 * 14 13 3 17 17 C 1.35555 * 119.99875 * 174.65448 * 16 14 13 18 18 C 1.41722 * 120.00056 * 350.08433 * 17 16 14 19 19 S 1.76209 * 126.19325 * 312.83783 * 18 17 16 20 20 C 1.70909 * 90.39222 * 179.97438 * 19 18 17 21 21 N 1.29359 * 110.65266 * 359.97438 * 20 19 18 22 22 C 1.30954 * 117.48953 * 359.74917 * 21 20 19 23 23 C 1.50700 * 123.07270 * 180.30523 * 22 21 20 24 24 H 1.09000 * 109.46916 * 60.00130 * 1 2 3 25 25 H 1.08995 * 109.47323 * 300.00614 * 1 2 3 26 26 H 1.08997 * 109.47233 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46916 * 119.99870 * 2 1 3 28 28 H 1.09006 * 109.47320 * 239.99904 * 2 1 3 29 29 H 0.96999 * 119.99803 * 179.97438 * 8 7 5 30 30 H 0.97001 * 119.99342 * 95.00720 * 13 3 2 31 31 H 1.08001 * 120.00068 * 354.65419 * 16 14 13 32 32 H 1.07999 * 120.00004 * 170.08320 * 17 16 14 33 33 H 1.08002 * 124.67620 * 180.02562 * 20 19 18 34 34 H 1.08997 * 109.46882 * 270.15320 * 23 22 21 35 35 H 1.08994 * 109.47766 * 30.16137 * 23 22 21 36 36 H 1.09002 * 109.46745 * 150.15916 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6267 1.9739 -0.8572 5 6 3.5446 1.4432 -0.0863 6 1 4.1370 1.3540 0.8123 7 6 4.1647 1.5579 -1.3125 8 7 5.4753 1.4856 -1.3958 9 14 3.1435 1.8159 -2.8551 10 1 3.0304 3.2696 -3.1365 11 1 3.8002 1.1393 -4.0024 12 1 1.7881 1.2439 -2.6529 13 7 1.6214 2.1085 1.2359 14 6 0.4017 2.6763 1.3155 15 8 -0.3525 2.6353 0.3603 16 6 -0.0029 3.3194 2.5098 17 6 -1.1837 3.9836 2.5553 18 6 -1.9126 4.2157 1.3623 19 16 -1.2591 4.8341 -0.1528 20 6 -2.8077 4.7455 -0.8705 21 7 -3.6774 4.2960 -0.0249 22 6 -3.2524 3.9936 1.1762 23 6 -4.1546 3.4545 2.2563 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8933 -0.5138 0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 5.9115 1.5658 -2.2584 30 1 2.2222 2.1408 1.9968 31 1 0.6291 3.2808 3.3847 32 1 -1.5689 4.3360 3.5007 33 1 -3.0294 5.0253 -1.8898 34 1 -4.5735 4.2834 2.8269 35 1 -4.9625 2.8808 1.8022 36 1 -3.5800 2.8095 2.9211 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492664844.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:58:41 Heat of formation + Delta-G solvation = 7.677727 kcal Electronic energy + Delta-G solvation = -19972.687649 eV Core-core repulsion = 16969.584626 eV Total energy + Delta-G solvation = -3003.103023 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.12565 -40.36071 -37.21590 -35.03390 -34.36250 -33.19977 -31.90506 -29.66230 -28.17830 -25.87640 -24.91087 -23.83803 -21.53484 -21.14781 -20.17755 -19.15851 -18.46022 -17.76228 -17.31842 -16.48369 -16.17118 -15.79611 -15.68839 -14.84339 -14.76882 -14.49218 -14.33351 -14.01096 -13.73538 -13.65245 -13.52937 -13.28592 -13.19125 -12.93290 -12.51793 -12.33891 -12.28763 -11.85984 -11.71601 -11.26963 -11.15996 -10.83386 -10.58718 -10.41919 -9.84610 -9.11427 -9.04656 -8.38388 -6.43491 -0.70231 0.52564 0.85701 1.09954 1.27275 1.32657 1.43987 1.93148 2.26863 2.62584 2.70787 3.09676 3.45546 4.05556 4.19927 4.28091 4.32803 4.33495 4.42240 4.57038 4.67035 4.79807 4.84927 4.88326 4.99216 5.10071 5.19662 5.25581 5.27682 5.36203 5.45254 5.52568 5.57688 5.85170 6.17798 6.62400 6.88805 7.03370 7.23105 7.59527 8.76890 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.023375 B = 0.005807 C = 0.005399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.590967 B = 4820.461295 C = 5185.161744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.121 4.121 3 C 0.244 3.756 4 H 0.033 0.967 5 C -0.524 4.524 6 H 0.054 0.946 7 C 0.033 3.967 8 N -0.932 5.932 9 Si 0.922 3.078 10 H -0.273 1.273 11 H -0.280 1.280 12 H -0.253 1.253 13 N -0.699 5.699 14 C 0.514 3.486 15 O -0.569 6.569 16 C -0.211 4.211 17 C 0.017 3.983 18 C -0.222 4.222 19 S 0.209 5.791 20 C -0.021 4.021 21 N -0.503 5.503 22 C 0.066 3.934 23 C -0.072 4.072 24 H 0.031 0.969 25 H 0.051 0.949 26 H 0.049 0.951 27 H 0.058 0.942 28 H 0.045 0.955 29 H 0.269 0.731 30 H 0.402 0.598 31 H 0.167 0.833 32 H 0.183 0.817 33 H 0.213 0.787 34 H 0.095 0.905 35 H 0.069 0.931 36 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.670 6.431 8.803 19.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.161 4.161 3 C 0.140 3.860 4 H 0.051 0.949 5 C -0.562 4.562 6 H 0.072 0.928 7 C -0.167 4.167 8 N -0.571 5.571 9 Si 0.747 3.253 10 H -0.198 1.198 11 H -0.206 1.206 12 H -0.177 1.177 13 N -0.348 5.348 14 C 0.305 3.695 15 O -0.453 6.453 16 C -0.235 4.235 17 C -0.005 4.005 18 C -0.343 4.343 19 S 0.469 5.531 20 C -0.313 4.313 21 N -0.219 5.219 22 C -0.072 4.072 23 C -0.131 4.131 24 H 0.050 0.950 25 H 0.070 0.930 26 H 0.068 0.932 27 H 0.077 0.923 28 H 0.064 0.936 29 H 0.078 0.922 30 H 0.237 0.763 31 H 0.184 0.816 32 H 0.200 0.800 33 H 0.229 0.771 34 H 0.113 0.887 35 H 0.088 0.912 36 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -15.567 6.708 7.315 18.462 hybrid contribution 0.088 -0.419 -0.343 0.549 sum -15.479 6.289 6.972 18.104 Atomic orbital electron populations 1.21699 0.95793 0.99753 1.01081 1.21969 0.94908 0.98377 1.00801 1.18848 0.92525 0.89875 0.84788 0.94869 1.21253 0.90414 1.50341 0.94231 0.92788 1.25579 0.95485 0.93991 1.01614 1.69988 1.09822 1.50946 1.26379 0.86108 0.80166 0.79045 0.80005 1.19802 1.20591 1.17728 1.46358 1.15973 1.55302 1.17123 1.17859 0.81960 0.80380 0.89314 1.90906 1.53149 1.60514 1.40692 1.22482 0.99489 1.02420 0.99128 1.20893 0.91316 0.92460 0.95836 1.23749 0.97108 1.13536 0.99952 1.83956 1.11851 1.52227 1.05111 1.28714 0.92842 1.04795 1.04978 1.65848 1.37356 1.15739 1.02932 1.21360 0.91453 1.00989 0.93375 1.20397 0.97440 1.01374 0.93909 0.95025 0.93034 0.93187 0.92300 0.93647 0.92172 0.76313 0.81598 0.79966 0.77098 0.88702 0.91208 0.89644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.84 8.48 71.98 0.61 -4.23 16 2 C -0.12 -5.12 5.60 30.59 0.17 -4.95 16 3 C 0.24 11.11 1.85 44.24 0.08 11.19 16 4 H 0.03 1.67 4.63 -2.39 -0.01 1.65 16 5 C -0.52 -27.88 9.05 25.60 0.23 -27.65 16 6 H 0.05 3.07 8.06 -2.91 -0.02 3.05 16 7 C 0.03 1.86 5.47 84.66 0.46 2.33 16 8 N -0.93 -55.42 13.96 21.45 0.30 -55.12 16 9 Si 0.92 44.20 27.20 68.60 1.87 46.07 16 10 H -0.27 -12.87 7.11 99.48 0.71 -12.16 16 11 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 12 H -0.25 -11.94 6.49 99.48 0.65 -11.30 16 13 N -0.70 -26.11 4.99 -455.14 -2.27 -28.38 16 14 C 0.51 17.51 5.69 85.06 0.48 18.00 16 15 O -0.57 -22.29 8.76 -4.59 -0.04 -22.33 16 16 C -0.21 -5.06 9.83 22.47 0.22 -4.84 16 17 C 0.02 0.35 9.12 22.51 0.21 0.56 16 18 C -0.22 -6.06 4.57 22.86 0.10 -5.96 16 19 S 0.21 6.29 19.73 -56.49 -1.11 5.18 16 20 C -0.02 -0.59 12.20 130.61 1.59 1.00 16 21 N -0.50 -15.36 10.49 -189.44 -1.99 -17.35 16 22 C 0.07 1.80 6.85 42.42 0.29 2.09 16 23 C -0.07 -1.38 10.09 71.24 0.72 -0.67 16 24 H 0.03 1.31 7.75 -2.39 -0.02 1.29 16 25 H 0.05 1.95 5.68 -2.39 -0.01 1.93 16 26 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 28 H 0.04 2.00 8.11 -2.38 -0.02 1.98 16 29 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 30 H 0.40 13.26 8.55 -92.71 -0.79 12.47 16 31 H 0.17 2.76 8.06 -2.91 -0.02 2.74 16 32 H 0.18 2.18 8.06 -2.91 -0.02 2.15 16 33 H 0.21 4.61 8.06 -2.91 -0.02 4.59 16 34 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.08 1.39 7.65 -2.39 -0.02 1.37 16 Total: -1.00 -68.84 310.10 2.17 -66.67 By element: Atomic # 1 Polarization: 18.14 SS G_CDS: 0.24 Total: 18.39 kcal Atomic # 6 Polarization: -18.30 SS G_CDS: 5.18 Total: -13.12 kcal Atomic # 7 Polarization: -96.89 SS G_CDS: -3.96 Total: -100.85 kcal Atomic # 8 Polarization: -22.29 SS G_CDS: -0.04 Total: -22.33 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 1.87 Total: 46.07 kcal Atomic # 16 Polarization: 6.29 SS G_CDS: -1.11 Total: 5.18 kcal Total: -68.84 2.17 -66.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492664844.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.347 kcal (2) G-P(sol) polarization free energy of solvation -68.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds