Wall clock time and date at job start Tue Mar 31 2020 02:04:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.46722 * 2 1 4 4 N 1.46501 * 109.47126 * 179.97438 * 3 2 1 5 5 C 1.36769 * 120.00025 * 263.94404 * 4 3 2 6 6 H 1.07998 * 120.00221 * 143.87447 * 5 4 3 7 7 C 1.39055 * 119.99891 * 323.86695 * 5 4 3 8 8 N 1.31368 * 120.00248 * 344.84040 * 7 5 4 9 9 Si 1.86797 * 120.00086 * 164.83307 * 7 5 4 10 10 H 1.48497 * 109.47148 * 60.00206 * 9 7 5 11 11 H 1.48500 * 109.47387 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47275 * 300.00217 * 9 7 5 13 13 C 1.34780 * 120.00146 * 83.93694 * 4 3 2 14 14 O 1.21837 * 120.00138 * 180.02562 * 13 4 3 15 15 C 1.41347 * 119.99728 * 0.27983 * 13 4 3 16 16 C 1.35710 * 120.00017 * 183.57622 * 15 13 4 17 17 C 1.41646 * 119.99779 * 8.49492 * 16 15 13 18 18 S 1.76218 * 126.19836 * 46.99681 * 17 16 15 19 19 C 1.70904 * 90.39467 * 179.97438 * 18 17 16 20 20 N 1.29365 * 110.66770 * 0.02562 * 19 18 17 21 21 C 1.30945 * 117.49570 * 359.72350 * 20 19 18 22 22 C 1.50699 * 123.08241 * 180.29045 * 21 20 19 23 23 H 1.08993 * 109.47473 * 299.99830 * 1 2 3 24 24 H 1.08996 * 109.47222 * 60.00387 * 1 2 3 25 25 H 1.09006 * 109.47039 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47350 * 240.00132 * 2 1 3 27 27 H 1.08996 * 109.47222 * 119.99613 * 2 1 3 28 28 H 1.09002 * 109.47543 * 59.99679 * 3 2 1 29 29 H 1.09005 * 109.47228 * 299.99763 * 3 2 1 30 30 H 0.97000 * 120.00236 * 179.97438 * 8 7 5 31 31 H 1.08000 * 119.99867 * 3.58048 * 15 13 4 32 32 H 1.07998 * 120.00461 * 188.48935 * 16 15 13 33 33 H 1.07998 * 124.66785 * 180.02562 * 19 18 17 34 34 H 1.09005 * 109.46998 * 270.21437 * 22 21 20 35 35 H 1.08999 * 109.47556 * 30.21765 * 22 21 20 36 36 H 1.09007 * 109.47070 * 150.21910 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.1882 1.5678 1.1787 6 1 5.1125 1.0291 1.3268 7 6 3.6931 2.3889 2.1858 8 7 2.7519 3.2647 1.9160 9 14 4.3661 2.2464 3.9225 10 1 5.8238 2.5294 3.9133 11 1 3.6771 3.2245 4.8022 12 1 4.1320 0.8716 4.4329 13 6 4.1793 1.3192 -1.1598 14 8 5.3977 1.3188 -1.1592 15 6 3.4731 1.1956 -2.3779 16 6 4.1498 0.9986 -3.5376 17 6 5.5417 0.7373 -3.5097 18 16 6.3633 -0.4156 -2.4603 19 6 7.8666 0.0037 -3.1570 20 7 7.7112 0.9100 -4.0669 21 6 6.4934 1.3320 -4.2982 22 6 6.1678 2.3779 -5.3331 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.6765 1.9564 0.8899 29 1 1.6765 1.9564 -0.8900 30 1 2.4062 3.8372 2.6186 31 1 2.3949 1.2581 -2.3857 32 1 3.6272 1.0409 -4.4818 33 1 8.8156 -0.4285 -2.8762 34 1 6.2141 3.3670 -4.8771 35 1 6.8891 2.3195 -6.1482 36 1 5.1646 2.2040 -5.7225 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492690535.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:04:04 Heat of formation + Delta-G solvation = 38.993998 kcal Electronic energy + Delta-G solvation = -19910.266490 eV Core-core repulsion = 16908.521442 eV Total energy + Delta-G solvation = -3001.745048 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.31434 -38.66237 -35.63550 -33.56374 -32.74006 -31.35258 -30.56298 -27.27555 -25.95060 -24.82500 -24.13690 -22.01286 -20.95930 -19.06967 -18.19457 -17.13875 -16.71341 -16.46497 -15.33006 -14.67569 -14.30761 -14.16324 -13.91433 -13.75822 -13.03083 -13.00187 -12.83425 -12.48077 -12.24849 -12.02034 -11.87631 -11.67539 -11.45531 -11.37681 -11.02326 -10.85786 -10.74643 -10.45316 -10.40254 -10.06559 -9.59602 -9.10834 -8.94517 -8.50689 -7.97770 -7.48706 -7.17848 -6.45618 -4.04757 0.84094 2.10434 2.42512 2.66231 3.13919 3.17008 3.20262 3.46208 4.03552 4.40214 4.84073 4.88413 5.00525 5.50193 5.56648 5.59642 5.62798 5.67412 5.71265 5.89800 5.97255 6.08733 6.11343 6.24024 6.27548 6.34009 6.42581 6.55283 6.73340 6.78007 6.87066 6.98447 7.23665 7.45962 8.13920 8.41549 8.43704 9.07916 9.27607 9.94097 10.53515 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.018346 B = 0.006081 C = 0.005222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.849103 B = 4603.369245 C = 5360.696157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.139 4.139 3 C 0.091 3.909 4 N -0.416 5.416 5 C -0.292 4.292 6 H 0.095 0.905 7 C 0.034 3.966 8 N -0.864 5.864 9 Si 0.924 3.076 10 H -0.270 1.270 11 H -0.282 1.282 12 H -0.271 1.271 13 C 0.456 3.544 14 O -0.576 6.576 15 C -0.169 4.169 16 C -0.049 4.049 17 C -0.189 4.189 18 S 0.269 5.731 19 C -0.054 4.054 20 N -0.482 5.482 21 C 0.055 3.945 22 C -0.068 4.068 23 H 0.054 0.946 24 H 0.049 0.951 25 H 0.047 0.953 26 H 0.050 0.950 27 H 0.063 0.937 28 H 0.122 0.878 29 H 0.050 0.950 30 H 0.272 0.728 31 H 0.123 0.877 32 H 0.128 0.872 33 H 0.182 0.818 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.448 -5.991 -7.181 9.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.178 4.178 3 C -0.033 4.033 4 N -0.130 5.130 5 C -0.421 4.421 6 H 0.113 0.887 7 C -0.171 4.171 8 N -0.501 5.501 9 Si 0.750 3.250 10 H -0.195 1.195 11 H -0.208 1.208 12 H -0.197 1.197 13 C 0.249 3.751 14 O -0.464 6.464 15 C -0.194 4.194 16 C -0.073 4.073 17 C -0.312 4.312 18 S 0.529 5.471 19 C -0.346 4.346 20 N -0.198 5.198 21 C -0.083 4.083 22 C -0.127 4.127 23 H 0.073 0.927 24 H 0.069 0.931 25 H 0.066 0.934 26 H 0.069 0.931 27 H 0.082 0.918 28 H 0.139 0.861 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.141 0.859 32 H 0.145 0.855 33 H 0.199 0.801 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.706 -6.433 -6.420 9.247 hybrid contribution -0.100 0.880 0.414 0.977 sum -1.806 -5.553 -6.006 8.377 Atomic orbital electron populations 1.21670 0.96245 1.00711 1.01600 1.21993 0.95024 0.99066 1.01705 1.21890 0.81956 0.94687 1.04745 1.43673 1.04889 1.58973 1.05463 1.19546 1.07776 1.24696 0.90091 0.88690 1.25489 0.96880 0.93880 1.00854 1.69751 1.27708 1.18666 1.33981 0.86021 0.79456 0.78271 0.81214 1.19547 1.20757 1.19666 1.17160 0.88118 0.85738 0.84072 1.90745 1.13284 1.55716 1.86704 1.22529 1.00259 1.02286 0.94312 1.20188 0.90603 0.98962 0.97524 1.23374 0.98818 1.05698 1.03310 1.83447 0.99105 1.31812 1.32704 1.28143 1.04246 1.03118 0.99104 1.65699 1.23693 1.12853 1.17531 1.20646 0.86556 1.00817 1.00317 1.20185 1.01183 0.95741 0.95570 0.92699 0.93149 0.93415 0.93130 0.91812 0.86094 0.93178 0.91751 0.85937 0.85474 0.80079 0.91278 0.91501 0.91401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 9.91 37.16 0.37 -1.65 16 2 C -0.14 -2.43 6.10 -26.73 -0.16 -2.59 16 3 C 0.09 1.91 4.55 -4.04 -0.02 1.89 16 4 N -0.42 -10.16 2.55 -118.14 -0.30 -10.46 16 5 C -0.29 -7.76 8.97 -15.05 -0.13 -7.90 16 6 H 0.10 2.63 7.70 -52.49 -0.40 2.22 16 7 C 0.03 0.86 5.07 -17.45 -0.09 0.77 16 8 N -0.86 -22.29 11.05 55.50 0.61 -21.68 16 9 Si 0.92 19.95 29.58 -169.99 -5.03 14.93 16 10 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 11 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 12 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 13 C 0.46 10.85 7.04 -15.08 -0.11 10.74 16 14 O -0.58 -15.06 11.19 5.07 0.06 -15.00 16 15 C -0.17 -3.25 8.56 -39.30 -0.34 -3.58 16 16 C -0.05 -0.85 9.21 -39.19 -0.36 -1.21 16 17 C -0.19 -3.62 4.65 -38.68 -0.18 -3.80 16 18 S 0.27 5.01 19.51 -107.50 -2.10 2.91 16 19 C -0.05 -0.97 12.20 51.72 0.63 -0.33 16 20 N -0.48 -9.37 10.49 -11.21 -0.12 -9.48 16 21 C 0.06 1.04 6.85 -83.37 -0.57 0.46 16 22 C -0.07 -1.00 10.09 36.01 0.36 -0.64 16 23 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 24 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.05 0.85 7.54 -51.93 -0.39 0.46 16 27 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 28 H 0.12 2.80 5.23 -51.93 -0.27 2.53 16 29 H 0.05 0.98 6.38 -51.93 -0.33 0.65 16 30 H 0.27 6.63 8.31 -40.82 -0.34 6.29 16 31 H 0.12 2.05 6.04 -52.49 -0.32 1.73 16 32 H 0.13 1.71 7.81 -52.49 -0.41 1.30 16 33 H 0.18 2.57 8.06 -52.49 -0.42 2.14 16 34 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.07 0.85 7.46 -51.92 -0.39 0.46 16 LS Contribution 312.24 15.07 4.71 4.71 Total: -1.00 -30.61 312.24 -7.37 -37.98 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -4.61 Total: 3.94 kcal Atomic # 6 Polarization: -7.24 SS G_CDS: -0.60 Total: -7.84 kcal Atomic # 7 Polarization: -41.82 SS G_CDS: 0.19 Total: -41.62 kcal Atomic # 8 Polarization: -15.06 SS G_CDS: 0.06 Total: -15.00 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.03 Total: 14.93 kcal Atomic # 16 Polarization: 5.01 SS G_CDS: -2.10 Total: 2.91 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -30.61 -7.37 -37.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492690535.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.974 kcal (2) G-P(sol) polarization free energy of solvation -30.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.980 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds