Wall clock time and date at job start Tue Mar 31 2020 02:04:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.46722 * 2 1 4 4 N 1.46501 * 109.47126 * 179.97438 * 3 2 1 5 5 C 1.36769 * 120.00025 * 263.94404 * 4 3 2 6 6 H 1.07998 * 120.00221 * 143.87447 * 5 4 3 7 7 C 1.39055 * 119.99891 * 323.86695 * 5 4 3 8 8 N 1.31368 * 120.00248 * 344.84040 * 7 5 4 9 9 Si 1.86797 * 120.00086 * 164.83307 * 7 5 4 10 10 H 1.48497 * 109.47148 * 60.00206 * 9 7 5 11 11 H 1.48500 * 109.47387 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47275 * 300.00217 * 9 7 5 13 13 C 1.34780 * 120.00146 * 83.93694 * 4 3 2 14 14 O 1.21837 * 120.00138 * 180.02562 * 13 4 3 15 15 C 1.41347 * 119.99728 * 0.27983 * 13 4 3 16 16 C 1.35710 * 120.00017 * 183.57622 * 15 13 4 17 17 C 1.41646 * 119.99779 * 8.49492 * 16 15 13 18 18 S 1.76218 * 126.19836 * 46.99681 * 17 16 15 19 19 C 1.70904 * 90.39467 * 179.97438 * 18 17 16 20 20 N 1.29365 * 110.66770 * 0.02562 * 19 18 17 21 21 C 1.30945 * 117.49570 * 359.72350 * 20 19 18 22 22 C 1.50699 * 123.08241 * 180.29045 * 21 20 19 23 23 H 1.08993 * 109.47473 * 299.99830 * 1 2 3 24 24 H 1.08996 * 109.47222 * 60.00387 * 1 2 3 25 25 H 1.09006 * 109.47039 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47350 * 240.00132 * 2 1 3 27 27 H 1.08996 * 109.47222 * 119.99613 * 2 1 3 28 28 H 1.09002 * 109.47543 * 59.99679 * 3 2 1 29 29 H 1.09005 * 109.47228 * 299.99763 * 3 2 1 30 30 H 0.97000 * 120.00236 * 179.97438 * 8 7 5 31 31 H 1.08000 * 119.99867 * 3.58048 * 15 13 4 32 32 H 1.07998 * 120.00461 * 188.48935 * 16 15 13 33 33 H 1.07998 * 124.66785 * 180.02562 * 19 18 17 34 34 H 1.09005 * 109.46998 * 270.21437 * 22 21 20 35 35 H 1.08999 * 109.47556 * 30.21765 * 22 21 20 36 36 H 1.09007 * 109.47070 * 150.21910 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.1882 1.5678 1.1787 6 1 5.1125 1.0291 1.3268 7 6 3.6931 2.3889 2.1858 8 7 2.7519 3.2647 1.9160 9 14 4.3661 2.2464 3.9225 10 1 5.8238 2.5294 3.9133 11 1 3.6771 3.2245 4.8022 12 1 4.1320 0.8716 4.4329 13 6 4.1793 1.3192 -1.1598 14 8 5.3977 1.3188 -1.1592 15 6 3.4731 1.1956 -2.3779 16 6 4.1498 0.9986 -3.5376 17 6 5.5417 0.7373 -3.5097 18 16 6.3633 -0.4156 -2.4603 19 6 7.8666 0.0037 -3.1570 20 7 7.7112 0.9100 -4.0669 21 6 6.4934 1.3320 -4.2982 22 6 6.1678 2.3779 -5.3331 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.6765 1.9564 0.8899 29 1 1.6765 1.9564 -0.8900 30 1 2.4062 3.8372 2.6186 31 1 2.3949 1.2581 -2.3857 32 1 3.6272 1.0409 -4.4818 33 1 8.8156 -0.4285 -2.8762 34 1 6.2141 3.3670 -4.8771 35 1 6.8891 2.3195 -6.1482 36 1 5.1646 2.2040 -5.7225 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492690535.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:04:02 Heat of formation + Delta-G solvation = 20.900100 kcal Electronic energy + Delta-G solvation = -19911.051100 eV Core-core repulsion = 16908.521442 eV Total energy + Delta-G solvation = -3002.529658 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.92149 -40.23063 -37.33586 -35.10255 -34.38467 -33.02569 -31.92855 -28.78921 -27.50675 -26.37495 -25.61611 -23.59987 -22.38980 -20.62703 -19.71794 -18.90136 -18.26573 -18.06511 -17.03396 -16.28872 -15.82192 -15.68041 -15.52217 -15.32480 -14.53325 -14.42493 -14.23999 -13.92212 -13.60587 -13.41614 -13.22841 -13.20269 -13.03214 -12.97298 -12.58760 -12.30689 -12.22178 -12.11275 -11.96120 -11.57614 -11.13870 -10.89595 -10.45405 -10.18693 -9.62788 -9.04745 -8.83265 -8.32341 -6.03293 -0.60739 0.67545 0.97670 1.20522 1.39195 1.41958 1.48677 2.01050 2.26452 2.63005 3.16493 3.22845 3.54235 4.11318 4.17772 4.27121 4.34848 4.38248 4.39443 4.61778 4.68150 4.81188 4.83205 4.89488 5.01233 5.03081 5.16046 5.28903 5.32337 5.35397 5.40271 5.49635 5.60759 5.67738 6.22676 6.57780 6.98367 7.19458 7.48800 8.12254 8.64839 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.018346 B = 0.006081 C = 0.005222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.849103 B = 4603.369245 C = 5360.696157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.129 4.129 3 C 0.094 3.906 4 N -0.437 5.437 5 C -0.327 4.327 6 H 0.068 0.932 7 C 0.001 3.999 8 N -0.887 5.887 9 Si 0.980 3.020 10 H -0.280 1.280 11 H -0.271 1.271 12 H -0.263 1.263 13 C 0.452 3.548 14 O -0.610 6.610 15 C -0.197 4.197 16 C -0.012 4.012 17 C -0.219 4.219 18 S 0.245 5.755 19 C -0.044 4.044 20 N -0.506 5.506 21 C 0.050 3.950 22 C -0.069 4.069 23 H 0.048 0.952 24 H 0.067 0.933 25 H 0.068 0.932 26 H 0.058 0.942 27 H 0.041 0.959 28 H 0.097 0.903 29 H 0.063 0.937 30 H 0.275 0.725 31 H 0.149 0.851 32 H 0.177 0.823 33 H 0.213 0.787 34 H 0.065 0.935 35 H 0.080 0.920 36 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.310 -6.350 -8.935 11.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.168 4.168 3 C -0.029 4.029 4 N -0.152 5.152 5 C -0.456 4.456 6 H 0.085 0.915 7 C -0.202 4.202 8 N -0.525 5.525 9 Si 0.804 3.196 10 H -0.205 1.205 11 H -0.196 1.196 12 H -0.188 1.188 13 C 0.246 3.754 14 O -0.500 6.500 15 C -0.222 4.222 16 C -0.035 4.035 17 C -0.342 4.342 18 S 0.505 5.495 19 C -0.336 4.336 20 N -0.222 5.222 21 C -0.088 4.088 22 C -0.127 4.127 23 H 0.067 0.933 24 H 0.086 0.914 25 H 0.087 0.913 26 H 0.076 0.924 27 H 0.060 0.940 28 H 0.115 0.885 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.167 0.833 32 H 0.194 0.806 33 H 0.230 0.770 34 H 0.083 0.917 35 H 0.099 0.901 36 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -2.597 -6.798 -8.189 10.955 hybrid contribution 0.365 0.943 0.729 1.246 sum -2.232 -5.855 -7.460 9.742 Atomic orbital electron populations 1.21624 0.93317 1.02334 1.02192 1.21875 0.97413 0.96529 1.00988 1.21906 0.80227 0.96723 1.04019 1.43826 1.06114 1.60203 1.05079 1.19409 1.07967 1.26032 0.92144 0.91459 1.26115 0.97127 0.93280 1.03645 1.69836 1.28610 1.19179 1.34842 0.85191 0.78152 0.78743 0.77496 1.20541 1.19561 1.18804 1.17900 0.88074 0.84020 0.85357 1.90721 1.14920 1.56861 1.87536 1.22468 1.01468 1.05536 0.92695 1.20751 0.89726 0.94206 0.98829 1.23733 1.00023 1.06860 1.03548 1.83556 1.00154 1.32550 1.33239 1.28725 1.05002 1.01967 0.97872 1.65806 1.24247 1.13654 1.18456 1.21320 0.86227 1.00874 1.00387 1.20341 1.03330 0.94151 0.94923 0.93267 0.91417 0.91258 0.92364 0.93974 0.88531 0.91914 0.91555 0.83312 0.80558 0.77018 0.91656 0.90120 0.88536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.56 9.91 71.98 0.71 -2.84 16 2 C -0.13 -4.44 6.10 30.59 0.19 -4.25 16 3 C 0.09 3.98 4.55 86.38 0.39 4.37 16 4 N -0.44 -21.91 2.55 -645.84 -1.64 -23.55 16 5 C -0.33 -18.12 8.97 84.12 0.75 -17.37 16 6 H 0.07 3.97 7.70 -2.91 -0.02 3.95 16 7 C 0.00 0.04 5.07 84.96 0.43 0.47 16 8 N -0.89 -46.85 11.05 21.68 0.24 -46.61 16 9 Si 0.98 42.00 29.58 68.60 2.03 44.03 16 10 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 11 H -0.27 -10.99 7.11 99.48 0.71 -10.29 16 12 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 13 C 0.45 21.72 7.04 85.01 0.60 22.32 16 14 O -0.61 -32.56 11.19 -4.79 -0.05 -32.62 16 15 C -0.20 -7.24 8.56 22.45 0.19 -7.05 16 16 C -0.01 -0.39 9.21 22.53 0.21 -0.18 16 17 C -0.22 -7.98 4.65 22.86 0.11 -7.87 16 18 S 0.24 9.02 19.51 -56.49 -1.10 7.92 16 19 C -0.04 -1.51 12.20 130.61 1.59 0.08 16 20 N -0.51 -18.84 10.49 -189.39 -1.99 -20.82 16 21 C 0.05 1.78 6.85 42.43 0.29 2.07 16 22 C -0.07 -1.82 10.09 71.24 0.72 -1.10 16 23 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 24 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 25 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 26 H 0.06 1.88 7.54 -2.39 -0.02 1.87 16 27 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.10 4.58 5.23 -2.39 -0.01 4.57 16 29 H 0.06 2.40 6.38 -2.38 -0.02 2.39 16 30 H 0.27 13.60 8.31 -92.71 -0.77 12.83 16 31 H 0.15 4.57 6.04 -2.91 -0.02 4.56 16 32 H 0.18 3.78 7.81 -2.91 -0.02 3.76 16 33 H 0.21 5.63 8.06 -2.91 -0.02 5.61 16 34 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16 35 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.10 1.98 7.46 -2.38 -0.02 1.96 16 Total: -1.00 -68.68 312.24 4.75 -63.93 By element: Atomic # 1 Polarization: 18.00 SS G_CDS: 1.08 Total: 19.09 kcal Atomic # 6 Polarization: -17.55 SS G_CDS: 6.19 Total: -11.37 kcal Atomic # 7 Polarization: -87.60 SS G_CDS: -3.39 Total: -90.99 kcal Atomic # 8 Polarization: -32.56 SS G_CDS: -0.05 Total: -32.62 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.03 kcal Atomic # 16 Polarization: 9.02 SS G_CDS: -1.10 Total: 7.92 kcal Total: -68.68 4.75 -63.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492690535.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.828 kcal (2) G-P(sol) polarization free energy of solvation -68.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.928 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds