Wall clock time and date at job start Tue Mar 31 2020 02:04:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47398 * 2 1 4 4 N 1.46490 * 109.47742 * 180.02562 * 3 2 1 5 5 C 1.36773 * 120.00422 * 96.31293 * 4 3 2 6 6 H 1.07998 * 120.00731 * 217.86869 * 5 4 3 7 7 C 1.39060 * 119.99505 * 37.86537 * 5 4 3 8 8 N 1.31369 * 120.00313 * 19.24546 * 7 5 4 9 9 Si 1.86802 * 120.00088 * 199.23700 * 7 5 4 10 10 H 1.48499 * 109.47117 * 60.00241 * 9 7 5 11 11 H 1.48495 * 109.47109 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47138 * 300.00438 * 9 7 5 13 13 C 1.34776 * 119.99994 * 276.04479 * 4 3 2 14 14 O 1.21843 * 120.00377 * 179.97438 * 13 4 3 15 15 C 1.41341 * 120.00076 * 359.97438 * 13 4 3 16 16 C 1.35711 * 120.00346 * 180.02562 * 15 13 4 17 17 C 1.41653 * 120.00080 * 180.02562 * 16 15 13 18 18 S 1.76214 * 126.19523 * 0.02562 * 17 16 15 19 19 C 1.70911 * 90.39163 * 180.02562 * 18 17 16 20 20 N 1.29360 * 110.66699 * 0.02562 * 19 18 17 21 21 C 1.30949 * 117.49829 * 359.70527 * 20 19 18 22 22 C 1.50697 * 123.08641 * 180.33075 * 21 20 19 23 23 H 1.09000 * 109.47096 * 60.00591 * 1 2 3 24 24 H 1.09004 * 109.46719 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47056 * 299.99819 * 1 2 3 26 26 H 1.09003 * 109.47636 * 239.99852 * 2 1 3 27 27 H 1.09007 * 109.47653 * 119.99696 * 2 1 3 28 28 H 1.08999 * 109.47226 * 59.99681 * 3 2 1 29 29 H 1.09008 * 109.46769 * 299.99961 * 3 2 1 30 30 H 0.96993 * 120.00603 * 179.97438 * 8 7 5 31 31 H 1.08001 * 119.99904 * 359.97438 * 15 13 4 32 32 H 1.08003 * 120.00204 * 359.97438 * 16 15 13 33 33 H 1.08010 * 124.66820 * 180.02562 * 19 18 17 34 34 H 1.09003 * 109.47047 * 270.21366 * 22 21 20 35 35 H 1.09003 * 109.47157 * 30.21239 * 22 21 20 36 36 H 1.08992 * 109.47094 * 150.21291 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.1884 1.5730 -1.1781 6 1 5.0978 1.0133 -1.3397 7 6 3.7122 2.4264 -2.1675 8 7 2.8546 3.3733 -1.8613 9 14 4.2921 2.2265 -3.9319 10 1 3.9300 0.8722 -4.4216 11 1 3.6417 3.2525 -4.7860 12 1 5.7663 2.3962 -3.9907 13 6 4.1793 1.3195 1.1598 14 8 5.3977 1.3191 1.1593 15 6 3.4731 1.1909 2.3774 16 6 4.1521 1.0676 3.5459 17 6 3.4444 0.9382 4.7661 18 16 1.6926 0.9167 4.9557 19 6 1.8661 0.7391 6.6467 20 7 3.1165 0.7060 6.9764 21 6 3.9985 0.8025 6.0133 22 6 5.4858 0.7710 6.2537 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8934 -0.5139 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.6767 1.9564 0.8899 29 1 1.6767 1.9563 -0.8901 30 1 2.5227 3.9687 -2.5513 31 1 2.3931 1.1917 2.3779 32 1 5.2322 1.0672 3.5455 33 1 1.0447 0.6647 7.3441 34 1 5.8482 1.7852 6.4218 35 1 5.6994 0.1589 7.1300 36 1 5.9856 0.3462 5.3832 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492690536.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:04:05 Heat of formation + Delta-G solvation = 21.908180 kcal Electronic energy + Delta-G solvation = -19349.485948 eV Core-core repulsion = 16347.000003 eV Total energy + Delta-G solvation = -3002.485945 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -39.72118 -38.85059 -35.50778 -34.05038 -32.86773 -31.33869 -30.92473 -27.68458 -25.96538 -25.12240 -24.50996 -22.13440 -20.97530 -19.02586 -18.85938 -17.18537 -17.05142 -16.58165 -15.34751 -14.86253 -14.79524 -14.44698 -13.89829 -13.75831 -13.51604 -13.15204 -13.02285 -12.64941 -12.51946 -12.38139 -11.80153 -11.71072 -11.49094 -11.40597 -11.08537 -10.90911 -10.77461 -10.50306 -10.43505 -10.36559 -10.03463 -9.65499 -9.05590 -8.95909 -8.49660 -7.86061 -7.52777 -6.48230 -4.04050 0.22683 1.41678 1.81152 2.13149 3.01507 3.16605 3.18555 3.21931 4.04711 4.27280 4.40654 4.78201 4.96421 5.11589 5.14778 5.40265 5.49316 5.58316 5.65517 5.67642 5.75096 5.83866 5.90843 6.08257 6.21102 6.31733 6.36433 6.39855 6.53354 6.67891 6.77372 6.85794 7.16405 7.44112 7.77099 8.15471 8.41061 9.08486 9.26198 9.93569 10.54218 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.024361 B = 0.004688 C = 0.004123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.118927 B = 5971.511300 C = 6789.201170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.142 4.142 3 C 0.100 3.900 4 N -0.420 5.420 5 C -0.299 4.299 6 H 0.095 0.905 7 C 0.037 3.963 8 N -0.859 5.859 9 Si 0.922 3.078 10 H -0.271 1.271 11 H -0.282 1.282 12 H -0.270 1.270 13 C 0.469 3.531 14 O -0.591 6.591 15 C -0.148 4.148 16 C -0.058 4.058 17 C -0.173 4.173 18 S 0.137 5.863 19 C -0.009 4.009 20 N -0.465 5.465 21 C 0.060 3.940 22 C -0.077 4.077 23 H 0.054 0.946 24 H 0.048 0.952 25 H 0.050 0.950 26 H 0.065 0.935 27 H 0.051 0.949 28 H 0.050 0.950 29 H 0.111 0.889 30 H 0.272 0.728 31 H 0.115 0.885 32 H 0.146 0.854 33 H 0.195 0.805 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.359 -4.604 10.065 12.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.180 4.180 3 C -0.024 4.024 4 N -0.136 5.136 5 C -0.427 4.427 6 H 0.113 0.887 7 C -0.169 4.169 8 N -0.495 5.495 9 Si 0.748 3.252 10 H -0.196 1.196 11 H -0.208 1.208 12 H -0.195 1.195 13 C 0.262 3.738 14 O -0.478 6.478 15 C -0.172 4.172 16 C -0.082 4.082 17 C -0.294 4.294 18 S 0.393 5.607 19 C -0.304 4.304 20 N -0.178 5.178 21 C -0.076 4.076 22 C -0.136 4.136 23 H 0.073 0.927 24 H 0.067 0.933 25 H 0.069 0.931 26 H 0.084 0.916 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.129 0.871 30 H 0.083 0.917 31 H 0.133 0.867 32 H 0.163 0.837 33 H 0.212 0.788 34 H 0.094 0.906 35 H 0.092 0.908 36 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -6.714 -4.422 9.868 12.728 hybrid contribution 0.692 0.062 -0.632 0.939 sum -6.023 -4.360 9.235 11.856 Atomic orbital electron populations 1.21679 0.96136 1.00843 1.01634 1.22018 0.95119 0.98935 1.01942 1.21713 0.81981 0.94666 1.04035 1.43560 1.04763 1.59802 1.05454 1.19514 1.09353 1.23292 0.90576 0.88733 1.25499 0.96923 0.93512 1.00941 1.69879 1.30793 1.14487 1.34364 0.86055 0.79450 0.78226 0.81433 1.19631 1.20775 1.19470 1.16875 0.87921 0.85063 0.83930 1.90673 1.13475 1.56736 1.86941 1.22575 0.99733 1.00432 0.94449 1.20362 1.00205 0.99317 0.88313 1.23794 0.95283 1.11757 0.98569 1.83983 1.04785 1.66033 1.05887 1.28243 0.97304 1.06671 0.98147 1.65817 1.00632 1.15202 1.36129 1.20967 0.97458 1.02896 0.86270 1.20346 0.87146 1.03012 1.03104 0.92670 0.93287 0.93083 0.91586 0.92998 0.93156 0.87115 0.91747 0.86740 0.83660 0.78785 0.90564 0.90767 0.90224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 9.91 37.16 0.37 -1.67 16 2 C -0.14 -2.50 6.07 -26.73 -0.16 -2.66 16 3 C 0.10 2.12 4.54 -4.05 -0.02 2.11 16 4 N -0.42 -10.55 2.53 -118.15 -0.30 -10.85 16 5 C -0.30 -8.10 8.90 -15.04 -0.13 -8.23 16 6 H 0.10 2.67 7.76 -52.49 -0.41 2.26 16 7 C 0.04 0.95 4.95 -17.44 -0.09 0.87 16 8 N -0.86 -22.37 11.44 55.50 0.63 -21.74 16 9 Si 0.92 19.88 29.60 -169.99 -5.03 14.85 16 10 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 11 H -0.28 -5.95 7.11 56.52 0.40 -5.54 16 12 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 13 C 0.47 11.68 7.34 -15.08 -0.11 11.57 16 14 O -0.59 -16.68 15.98 5.06 0.08 -16.60 16 15 C -0.15 -2.95 8.05 -39.31 -0.32 -3.27 16 16 C -0.06 -1.05 8.96 -39.18 -0.35 -1.40 16 17 C -0.17 -2.71 6.26 -38.67 -0.24 -2.95 16 18 S 0.14 1.76 21.97 -107.50 -2.36 -0.60 16 19 C -0.01 -0.11 12.20 51.72 0.63 0.52 16 20 N -0.46 -6.68 10.49 -11.21 -0.12 -6.80 16 21 C 0.06 0.88 6.85 -83.37 -0.57 0.31 16 22 C -0.08 -0.94 10.04 36.00 0.36 -0.58 16 23 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 27 H 0.05 0.89 7.44 -51.92 -0.39 0.51 16 28 H 0.05 1.00 6.44 -51.93 -0.33 0.66 16 29 H 0.11 2.56 5.55 -51.92 -0.29 2.28 16 30 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 31 H 0.11 2.06 4.98 -52.49 -0.26 1.79 16 32 H 0.15 2.69 6.53 -52.48 -0.34 2.34 16 33 H 0.20 1.56 8.06 -52.48 -0.42 1.14 16 34 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.08 0.95 7.10 -51.93 -0.37 0.58 16 LS Contribution 318.43 15.07 4.80 4.80 Total: -1.00 -30.95 318.43 -7.41 -38.36 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -4.48 Total: 3.95 kcal Atomic # 6 Polarization: -4.75 SS G_CDS: -0.63 Total: -5.38 kcal Atomic # 7 Polarization: -39.60 SS G_CDS: 0.22 Total: -39.38 kcal Atomic # 8 Polarization: -16.68 SS G_CDS: 0.08 Total: -16.60 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.03 Total: 14.85 kcal Atomic # 16 Polarization: 1.76 SS G_CDS: -2.36 Total: -0.60 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -30.95 -7.41 -38.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492690536.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.267 kcal (2) G-P(sol) polarization free energy of solvation -30.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds