Wall clock time and date at job start Tue Mar 31 2020 02:04:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47398 * 2 1 4 4 N 1.46490 * 109.47742 * 180.02562 * 3 2 1 5 5 C 1.36773 * 120.00422 * 96.31293 * 4 3 2 6 6 H 1.07998 * 120.00731 * 217.86869 * 5 4 3 7 7 C 1.39060 * 119.99505 * 37.86537 * 5 4 3 8 8 N 1.31369 * 120.00313 * 19.24546 * 7 5 4 9 9 Si 1.86802 * 120.00088 * 199.23700 * 7 5 4 10 10 H 1.48499 * 109.47117 * 60.00241 * 9 7 5 11 11 H 1.48495 * 109.47109 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47138 * 300.00438 * 9 7 5 13 13 C 1.34776 * 119.99994 * 276.04479 * 4 3 2 14 14 O 1.21843 * 120.00377 * 179.97438 * 13 4 3 15 15 C 1.41341 * 120.00076 * 359.97438 * 13 4 3 16 16 C 1.35711 * 120.00346 * 180.02562 * 15 13 4 17 17 C 1.41653 * 120.00080 * 180.02562 * 16 15 13 18 18 S 1.76214 * 126.19523 * 0.02562 * 17 16 15 19 19 C 1.70911 * 90.39163 * 180.02562 * 18 17 16 20 20 N 1.29360 * 110.66699 * 0.02562 * 19 18 17 21 21 C 1.30949 * 117.49829 * 359.70527 * 20 19 18 22 22 C 1.50697 * 123.08641 * 180.33075 * 21 20 19 23 23 H 1.09000 * 109.47096 * 60.00591 * 1 2 3 24 24 H 1.09004 * 109.46719 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47056 * 299.99819 * 1 2 3 26 26 H 1.09003 * 109.47636 * 239.99852 * 2 1 3 27 27 H 1.09007 * 109.47653 * 119.99696 * 2 1 3 28 28 H 1.08999 * 109.47226 * 59.99681 * 3 2 1 29 29 H 1.09008 * 109.46769 * 299.99961 * 3 2 1 30 30 H 0.96993 * 120.00603 * 179.97438 * 8 7 5 31 31 H 1.08001 * 119.99904 * 359.97438 * 15 13 4 32 32 H 1.08003 * 120.00204 * 359.97438 * 16 15 13 33 33 H 1.08010 * 124.66820 * 180.02562 * 19 18 17 34 34 H 1.09003 * 109.47047 * 270.21366 * 22 21 20 35 35 H 1.09003 * 109.47157 * 30.21239 * 22 21 20 36 36 H 1.08992 * 109.47094 * 150.21291 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.1884 1.5730 -1.1781 6 1 5.0978 1.0133 -1.3397 7 6 3.7122 2.4264 -2.1675 8 7 2.8546 3.3733 -1.8613 9 14 4.2921 2.2265 -3.9319 10 1 3.9300 0.8722 -4.4216 11 1 3.6417 3.2525 -4.7860 12 1 5.7663 2.3962 -3.9907 13 6 4.1793 1.3195 1.1598 14 8 5.3977 1.3191 1.1593 15 6 3.4731 1.1909 2.3774 16 6 4.1521 1.0676 3.5459 17 6 3.4444 0.9382 4.7661 18 16 1.6926 0.9167 4.9557 19 6 1.8661 0.7391 6.6467 20 7 3.1165 0.7060 6.9764 21 6 3.9985 0.8025 6.0133 22 6 5.4858 0.7710 6.2537 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8934 -0.5139 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.6767 1.9564 0.8899 29 1 1.6767 1.9563 -0.8901 30 1 2.5227 3.9687 -2.5513 31 1 2.3931 1.1917 2.3779 32 1 5.2322 1.0672 3.5455 33 1 1.0447 0.6647 7.3441 34 1 5.8482 1.7852 6.4218 35 1 5.6994 0.1589 7.1300 36 1 5.9856 0.3462 5.3832 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492690536.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:04:05 Heat of formation + Delta-G solvation = 2.947961 kcal Electronic energy + Delta-G solvation = -19350.308125 eV Core-core repulsion = 16347.000003 eV Total energy + Delta-G solvation = -3003.308121 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.95326 -40.57550 -37.28230 -35.52227 -34.52253 -33.05943 -32.14405 -29.08238 -27.54466 -26.50228 -25.85584 -23.65439 -22.43067 -20.42360 -20.23926 -18.86514 -18.45592 -18.18039 -17.03674 -16.36198 -16.04189 -15.96291 -15.55308 -15.39624 -14.76634 -14.54262 -14.38777 -14.02405 -13.66403 -13.48203 -13.42381 -13.25487 -13.04637 -12.91218 -12.59880 -12.32502 -12.14818 -12.06760 -12.00158 -11.85491 -11.57597 -10.92124 -10.78788 -10.42069 -10.02966 -9.51876 -9.12420 -8.39142 -6.08274 -0.98097 0.33452 0.73933 0.78365 1.40717 1.42378 1.51463 1.82873 2.27240 2.57998 3.07378 3.10967 3.28570 3.90412 3.98070 4.05287 4.18025 4.25047 4.32587 4.52802 4.59179 4.69516 4.71529 4.75816 4.90128 4.95638 5.12896 5.18680 5.26811 5.29058 5.32814 5.37109 5.45675 5.56945 6.18580 6.52181 6.66712 7.14018 7.39595 8.03768 8.62728 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.024361 B = 0.004688 C = 0.004123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.118927 B = 5971.511300 C = 6789.201170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.133 4.133 3 C 0.104 3.896 4 N -0.438 5.438 5 C -0.342 4.342 6 H 0.066 0.934 7 C 0.006 3.994 8 N -0.883 5.883 9 Si 0.985 3.015 10 H -0.262 1.262 11 H -0.269 1.269 12 H -0.277 1.277 13 C 0.465 3.535 14 O -0.642 6.642 15 C -0.192 4.192 16 C -0.006 4.006 17 C -0.236 4.236 18 S 0.176 5.824 19 C 0.026 3.974 20 N -0.494 5.494 21 C 0.086 3.914 22 C -0.084 4.084 23 H 0.052 0.948 24 H 0.071 0.929 25 H 0.067 0.933 26 H 0.047 0.953 27 H 0.055 0.945 28 H 0.060 0.940 29 H 0.090 0.910 30 H 0.277 0.723 31 H 0.135 0.865 32 H 0.132 0.868 33 H 0.241 0.759 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.562 -5.201 12.431 15.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.171 4.171 3 C -0.019 4.019 4 N -0.153 5.153 5 C -0.470 4.470 6 H 0.083 0.917 7 C -0.197 4.197 8 N -0.520 5.520 9 Si 0.807 3.193 10 H -0.187 1.187 11 H -0.193 1.193 12 H -0.202 1.202 13 C 0.259 3.741 14 O -0.533 6.533 15 C -0.215 4.215 16 C -0.030 4.030 17 C -0.357 4.357 18 S 0.433 5.567 19 C -0.268 4.268 20 N -0.208 5.208 21 C -0.051 4.051 22 C -0.143 4.143 23 H 0.071 0.929 24 H 0.090 0.910 25 H 0.086 0.914 26 H 0.066 0.934 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.108 0.892 30 H 0.087 0.913 31 H 0.152 0.848 32 H 0.150 0.850 33 H 0.257 0.743 34 H 0.106 0.894 35 H 0.109 0.891 36 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -8.968 -5.020 12.220 15.967 hybrid contribution 1.351 0.203 -0.862 1.615 sum -7.617 -4.817 11.358 14.499 Atomic orbital electron populations 1.21637 0.92893 1.02600 1.02363 1.21912 0.97773 0.96237 1.01213 1.21764 0.79933 0.96877 1.03322 1.43728 1.06184 1.60417 1.04978 1.19407 1.09910 1.25066 0.92660 0.91662 1.26199 0.96814 0.92608 1.04118 1.69946 1.31651 1.14892 1.35511 0.85143 0.78426 0.78807 0.76893 1.18664 1.19298 1.20216 1.17597 0.87611 0.83425 0.85445 1.90607 1.15721 1.58931 1.87997 1.22185 1.00372 1.06280 0.92686 1.20371 0.99775 0.93908 0.88901 1.23671 0.97516 1.16689 0.97816 1.83918 1.02027 1.64696 1.06100 1.29192 0.97706 1.01297 0.98622 1.65989 1.01456 1.17489 1.35859 1.21415 0.98666 0.98960 0.86032 1.20500 0.85952 1.04037 1.03821 0.92897 0.90981 0.91420 0.93439 0.92605 0.92132 0.89226 0.91313 0.84766 0.84997 0.74337 0.89445 0.89125 0.90361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.61 9.91 71.98 0.71 -2.89 16 2 C -0.13 -4.71 6.07 30.59 0.19 -4.53 16 3 C 0.10 4.55 4.54 86.38 0.39 4.95 16 4 N -0.44 -23.19 2.53 -645.86 -1.63 -24.82 16 5 C -0.34 -19.72 8.90 84.12 0.75 -18.97 16 6 H 0.07 4.01 7.76 -2.91 -0.02 3.99 16 7 C 0.01 0.33 4.95 84.96 0.42 0.75 16 8 N -0.88 -47.46 11.44 21.68 0.25 -47.21 16 9 Si 0.98 42.07 29.60 68.60 2.03 44.10 16 10 H -0.26 -10.71 7.11 99.48 0.71 -10.01 16 11 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 12 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 13 C 0.46 24.43 7.34 85.00 0.62 25.05 16 14 O -0.64 -38.61 15.98 -4.81 -0.08 -38.69 16 15 C -0.19 -7.84 8.05 22.45 0.18 -7.66 16 16 C -0.01 -0.22 8.96 22.53 0.20 -0.02 16 17 C -0.24 -6.94 6.26 22.86 0.14 -6.80 16 18 S 0.18 3.89 21.97 -56.49 -1.24 2.65 16 19 C 0.03 0.48 12.20 130.61 1.59 2.08 16 20 N -0.49 -12.23 10.49 -189.38 -1.99 -14.22 16 21 C 0.09 2.32 6.85 42.43 0.29 2.61 16 22 C -0.08 -1.89 10.04 71.23 0.72 -1.17 16 23 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 24 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 25 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 26 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 27 H 0.06 1.92 7.44 -2.38 -0.02 1.90 16 28 H 0.06 2.44 6.44 -2.39 -0.02 2.43 16 29 H 0.09 4.30 5.55 -2.38 -0.01 4.29 16 30 H 0.28 13.80 8.31 -92.71 -0.77 13.03 16 31 H 0.13 4.79 4.98 -2.91 -0.01 4.78 16 32 H 0.13 5.03 6.53 -2.91 -0.02 5.01 16 33 H 0.24 2.23 8.06 -2.91 -0.02 2.21 16 34 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.08 1.79 7.10 -2.39 -0.02 1.77 16 Total: -1.00 -71.62 318.43 4.64 -66.98 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: 1.09 Total: 17.82 kcal Atomic # 6 Polarization: -12.82 SS G_CDS: 6.21 Total: -6.61 kcal Atomic # 7 Polarization: -82.88 SS G_CDS: -3.37 Total: -86.25 kcal Atomic # 8 Polarization: -38.61 SS G_CDS: -0.08 Total: -38.69 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.10 kcal Atomic # 16 Polarization: 3.89 SS G_CDS: -1.24 Total: 2.65 kcal Total: -71.62 4.64 -66.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492690536.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.929 kcal (2) G-P(sol) polarization free energy of solvation -71.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds