Wall clock time and date at job start Tue Mar 31 2020 02:02:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.47415 * 2 1 4 4 N 1.46497 * 109.47003 * 180.02562 * 3 2 1 5 5 C 1.36887 * 119.99764 * 274.33908 * 4 3 2 6 6 H 1.08008 * 119.99789 * 124.17545 * 5 4 3 7 7 C 1.39010 * 120.00297 * 304.16689 * 5 4 3 8 8 N 1.31393 * 119.99962 * 183.13840 * 7 5 4 9 9 Si 1.86796 * 119.99958 * 3.14494 * 7 5 4 10 10 H 1.48498 * 109.47321 * 94.45012 * 9 7 5 11 11 H 1.48499 * 109.46949 * 214.45449 * 9 7 5 12 12 H 1.48503 * 109.47126 * 334.44995 * 9 7 5 13 13 C 1.34778 * 119.99718 * 94.34476 * 4 3 2 14 14 O 1.21729 * 120.00197 * 2.82944 * 13 4 3 15 15 C 1.46562 * 119.99456 * 182.83027 * 13 4 3 16 16 C 1.36776 * 126.18363 * 352.61089 * 15 13 4 17 17 N 1.30943 * 113.92448 * 179.97438 * 16 15 13 18 18 C 1.29377 * 117.46532 * 0.02562 * 17 16 15 19 19 C 1.50697 * 124.70202 * 179.97438 * 18 17 16 20 20 C 1.53001 * 117.50193 * 8.64991 * 19 18 17 21 21 C 1.52996 * 117.50325 * 300.02209 * 19 18 17 22 22 S 1.70929 * 110.59739 * 359.97438 * 18 17 16 23 23 H 1.08993 * 109.47036 * 59.99624 * 1 2 3 24 24 H 1.08999 * 109.47200 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.46383 * 299.99969 * 1 2 3 26 26 H 1.08996 * 109.46838 * 239.99819 * 2 1 3 27 27 H 1.09006 * 109.46809 * 120.00076 * 2 1 3 28 28 H 1.09003 * 109.46917 * 59.99980 * 3 2 1 29 29 H 1.09002 * 109.47056 * 300.00328 * 3 2 1 30 30 H 0.97004 * 119.99764 * 180.02562 * 8 7 5 31 31 H 1.08001 * 123.03617 * 0.03090 * 16 15 13 32 32 H 1.09007 * 115.55033 * 154.35063 * 19 18 17 33 33 H 1.09004 * 117.49081 * 359.97438 * 20 19 18 34 34 H 1.08997 * 117.50166 * 145.01677 * 20 19 18 35 35 H 1.08998 * 117.50069 * 214.97690 * 21 19 18 36 36 H 1.09006 * 117.49486 * 359.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.1900 1.3525 1.1812 6 1 4.9150 0.5652 1.3266 7 6 3.9525 2.2744 2.1941 8 7 4.6534 2.2256 3.3044 9 14 2.6368 3.5825 1.9768 10 1 1.3641 3.1092 2.5780 11 1 3.0672 4.8340 2.6503 12 1 2.4332 3.8441 0.5293 13 6 4.1785 1.5309 -1.1648 14 8 3.5705 1.6628 -2.2111 15 6 5.6427 1.4684 -1.1709 16 6 6.4554 1.4650 -0.0707 17 7 7.7323 1.4020 -0.3539 18 6 8.0646 1.3525 -1.6033 19 6 9.4812 1.2776 -2.1119 20 6 10.5908 1.0552 -1.0822 21 6 10.4252 2.4243 -1.7448 22 16 6.6743 1.3835 -2.5971 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3632 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8899 27 1 1.8934 -0.5139 0.8900 28 1 1.6768 1.9563 0.8900 29 1 1.6768 1.9563 -0.8900 30 1 4.4874 2.8688 4.0114 31 1 6.0780 1.5093 0.9402 32 1 9.6049 0.8183 -3.0927 33 1 10.2960 0.9634 -0.0368 34 1 11.4446 0.4493 -1.3853 35 1 11.1702 2.7192 -2.4838 36 1 10.0214 3.2332 -1.1357 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000520516006.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:02:39 Heat of formation + Delta-G solvation = 45.298353 kcal Electronic energy + Delta-G solvation = -19689.193567 eV Core-core repulsion = 16687.721896 eV Total energy + Delta-G solvation = -3001.471671 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.57764 -38.59524 -36.54806 -35.41119 -33.26481 -31.80356 -29.68455 -26.36951 -25.79140 -24.64957 -22.35142 -22.09748 -21.45019 -20.23392 -18.63901 -18.06219 -16.80964 -16.03666 -15.71170 -14.97120 -14.56804 -14.35941 -14.15831 -13.78328 -13.73721 -13.40167 -12.91943 -12.54070 -12.21373 -11.98754 -11.77833 -11.61787 -11.44051 -11.17498 -10.99012 -10.86822 -10.63884 -10.51264 -10.39086 -10.14010 -9.77639 -9.52572 -9.01690 -8.80154 -8.74527 -8.07528 -7.72438 -6.61246 -4.47237 0.95608 1.79789 2.35381 2.98734 3.12098 3.18524 3.23911 3.94591 4.00038 4.15843 4.35380 4.51891 4.73448 4.92334 4.96594 5.08895 5.48177 5.54559 5.66648 5.73368 5.79029 5.89855 5.91403 5.99859 6.12593 6.23614 6.27738 6.28538 6.31987 6.36124 6.66533 6.82062 7.21823 7.36683 7.89490 7.98838 8.38076 8.75352 9.08852 9.48948 10.42677 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.020709 B = 0.005959 C = 0.005067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.712792 B = 4697.818969 C = 5524.564334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.133 4.133 3 C 0.108 3.892 4 N -0.455 5.455 5 C -0.358 4.358 6 H 0.112 0.888 7 C 0.074 3.926 8 N -0.855 5.855 9 Si 0.885 3.115 10 H -0.270 1.270 11 H -0.286 1.286 12 H -0.258 1.258 13 C 0.565 3.435 14 O -0.594 6.594 15 C -0.258 4.258 16 C 0.083 3.917 17 N -0.478 5.478 18 C 0.049 3.951 19 C -0.091 4.091 20 C -0.151 4.151 21 C -0.159 4.159 22 S 0.156 5.844 23 H 0.051 0.949 24 H 0.052 0.948 25 H 0.051 0.949 26 H 0.060 0.940 27 H 0.070 0.930 28 H 0.058 0.942 29 H 0.073 0.927 30 H 0.280 0.720 31 H 0.239 0.761 32 H 0.122 0.878 33 H 0.110 0.890 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.671 -1.461 -6.425 8.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.171 4.171 3 C -0.015 4.015 4 N -0.175 5.175 5 C -0.485 4.485 6 H 0.129 0.871 7 C -0.136 4.136 8 N -0.488 5.488 9 Si 0.713 3.287 10 H -0.196 1.196 11 H -0.213 1.213 12 H -0.183 1.183 13 C 0.354 3.646 14 O -0.479 6.479 15 C -0.381 4.381 16 C -0.071 4.071 17 N -0.193 5.193 18 C -0.225 4.225 19 C -0.113 4.113 20 C -0.190 4.190 21 C -0.198 4.198 22 S 0.414 5.586 23 H 0.071 0.929 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.079 0.921 27 H 0.089 0.911 28 H 0.076 0.924 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.254 0.746 32 H 0.140 0.860 33 H 0.128 0.872 34 H 0.115 0.885 35 H 0.117 0.883 36 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 4.615 -1.355 -7.451 8.869 hybrid contribution -1.056 0.679 1.086 1.660 sum 3.559 -0.675 -6.365 7.323 Atomic orbital electron populations 1.21712 0.96196 1.01187 1.01462 1.21796 0.94915 0.97802 1.02601 1.21689 0.82376 0.96506 1.00902 1.43337 1.03867 1.64671 1.05601 1.19096 1.23847 1.14602 0.90984 0.87081 1.25551 0.96449 0.96520 0.95075 1.69632 1.37629 1.35797 1.05737 0.86722 0.81390 0.80933 0.79676 1.19615 1.21303 1.18254 1.16999 0.84414 0.78919 0.84301 1.90689 1.69665 1.55506 1.32079 1.25886 0.99467 1.17691 0.95095 1.24857 0.84481 0.94135 1.03671 1.66244 1.19784 1.16005 1.17267 1.26318 0.99115 1.04476 0.92634 1.20432 0.84818 1.06043 0.99998 1.22989 0.98048 0.98753 0.99226 1.23019 1.00813 0.92528 1.03441 1.83555 0.97220 1.67115 1.10722 0.92950 0.92921 0.92942 0.92122 0.91080 0.92419 0.90837 0.90916 0.74622 0.86027 0.87203 0.88462 0.88263 0.88302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 9.91 37.16 0.37 -1.84 16 2 C -0.13 -2.46 6.24 -26.73 -0.17 -2.62 16 3 C 0.11 2.32 3.95 -4.04 -0.02 2.31 16 4 N -0.45 -10.84 2.02 -116.33 -0.24 -11.07 16 5 C -0.36 -8.83 6.63 -15.01 -0.10 -8.93 16 6 H 0.11 2.88 6.26 -52.48 -0.33 2.55 16 7 C 0.07 1.85 5.46 -17.45 -0.10 1.76 16 8 N -0.85 -22.15 13.96 55.50 0.77 -21.38 16 9 Si 0.89 19.99 24.85 -169.99 -4.22 15.77 16 10 H -0.27 -5.83 7.10 56.52 0.40 -5.43 16 11 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 12 H -0.26 -5.99 6.48 56.52 0.37 -5.62 16 13 C 0.56 13.78 7.61 -12.90 -0.10 13.69 16 14 O -0.59 -15.31 16.47 5.16 0.09 -15.22 16 15 C -0.26 -5.80 6.44 -36.76 -0.24 -6.04 16 16 C 0.08 1.85 9.87 -18.46 -0.18 1.67 16 17 N -0.48 -9.72 9.96 -11.25 -0.11 -9.83 16 18 C 0.05 0.86 6.95 -13.31 -0.09 0.77 16 19 C -0.09 -1.20 6.28 -91.77 -0.58 -1.78 16 20 C -0.15 -1.80 10.12 -26.73 -0.27 -2.07 16 21 C -0.16 -1.83 10.23 -26.73 -0.27 -2.11 16 22 S 0.16 2.87 23.01 -107.50 -2.47 0.40 16 23 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 25 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 26 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 27 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 28 H 0.06 1.24 3.72 -51.93 -0.19 1.04 16 29 H 0.07 1.60 7.26 -51.93 -0.38 1.22 16 30 H 0.28 6.84 8.31 -40.82 -0.34 6.50 16 31 H 0.24 5.75 4.31 -52.49 -0.23 5.53 16 32 H 0.12 1.31 8.14 -51.92 -0.42 0.89 16 33 H 0.11 1.53 7.83 -51.93 -0.41 1.12 16 34 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 LS Contribution 311.62 15.07 4.70 4.70 Total: -1.00 -28.01 311.62 -7.74 -35.74 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -4.51 Total: 6.11 kcal Atomic # 6 Polarization: -3.46 SS G_CDS: -1.74 Total: -5.20 kcal Atomic # 7 Polarization: -42.72 SS G_CDS: 0.43 Total: -42.29 kcal Atomic # 8 Polarization: -15.31 SS G_CDS: 0.09 Total: -15.22 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -4.22 Total: 15.77 kcal Atomic # 16 Polarization: 2.87 SS G_CDS: -2.47 Total: 0.40 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -28.01 -7.74 -35.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000520516006.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.041 kcal (2) G-P(sol) polarization free energy of solvation -28.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds