Wall clock time and date at job start Tue Mar 31 2020 02:02:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.47415 * 2 1 4 4 N 1.46497 * 109.47003 * 180.02562 * 3 2 1 5 5 C 1.36887 * 119.99764 * 274.33908 * 4 3 2 6 6 H 1.08008 * 119.99789 * 124.17545 * 5 4 3 7 7 C 1.39010 * 120.00297 * 304.16689 * 5 4 3 8 8 N 1.31393 * 119.99962 * 183.13840 * 7 5 4 9 9 Si 1.86796 * 119.99958 * 3.14494 * 7 5 4 10 10 H 1.48498 * 109.47321 * 94.45012 * 9 7 5 11 11 H 1.48499 * 109.46949 * 214.45449 * 9 7 5 12 12 H 1.48503 * 109.47126 * 334.44995 * 9 7 5 13 13 C 1.34778 * 119.99718 * 94.34476 * 4 3 2 14 14 O 1.21729 * 120.00197 * 2.82944 * 13 4 3 15 15 C 1.46562 * 119.99456 * 182.83027 * 13 4 3 16 16 C 1.36776 * 126.18363 * 352.61089 * 15 13 4 17 17 N 1.30943 * 113.92448 * 179.97438 * 16 15 13 18 18 C 1.29377 * 117.46532 * 0.02562 * 17 16 15 19 19 C 1.50697 * 124.70202 * 179.97438 * 18 17 16 20 20 C 1.53001 * 117.50193 * 8.64991 * 19 18 17 21 21 C 1.52996 * 117.50325 * 300.02209 * 19 18 17 22 22 S 1.70929 * 110.59739 * 359.97438 * 18 17 16 23 23 H 1.08993 * 109.47036 * 59.99624 * 1 2 3 24 24 H 1.08999 * 109.47200 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.46383 * 299.99969 * 1 2 3 26 26 H 1.08996 * 109.46838 * 239.99819 * 2 1 3 27 27 H 1.09006 * 109.46809 * 120.00076 * 2 1 3 28 28 H 1.09003 * 109.46917 * 59.99980 * 3 2 1 29 29 H 1.09002 * 109.47056 * 300.00328 * 3 2 1 30 30 H 0.97004 * 119.99764 * 180.02562 * 8 7 5 31 31 H 1.08001 * 123.03617 * 0.03090 * 16 15 13 32 32 H 1.09007 * 115.55033 * 154.35063 * 19 18 17 33 33 H 1.09004 * 117.49081 * 359.97438 * 20 19 18 34 34 H 1.08997 * 117.50166 * 145.01677 * 20 19 18 35 35 H 1.08998 * 117.50069 * 214.97690 * 21 19 18 36 36 H 1.09006 * 117.49486 * 359.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.1900 1.3525 1.1812 6 1 4.9150 0.5652 1.3266 7 6 3.9525 2.2744 2.1941 8 7 4.6534 2.2256 3.3044 9 14 2.6368 3.5825 1.9768 10 1 1.3641 3.1092 2.5780 11 1 3.0672 4.8340 2.6503 12 1 2.4332 3.8441 0.5293 13 6 4.1785 1.5309 -1.1648 14 8 3.5705 1.6628 -2.2111 15 6 5.6427 1.4684 -1.1709 16 6 6.4554 1.4650 -0.0707 17 7 7.7323 1.4020 -0.3539 18 6 8.0646 1.3525 -1.6033 19 6 9.4812 1.2776 -2.1119 20 6 10.5908 1.0552 -1.0822 21 6 10.4252 2.4243 -1.7448 22 16 6.6743 1.3835 -2.5971 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3632 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8899 27 1 1.8934 -0.5139 0.8900 28 1 1.6768 1.9563 0.8900 29 1 1.6768 1.9563 -0.8900 30 1 4.4874 2.8688 4.0114 31 1 6.0780 1.5093 0.9402 32 1 9.6049 0.8183 -3.0927 33 1 10.2960 0.9634 -0.0368 34 1 11.4446 0.4493 -1.3853 35 1 11.1702 2.7192 -2.4838 36 1 10.0214 3.2332 -1.1357 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000520516006.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:02:38 Heat of formation + Delta-G solvation = 29.067658 kcal Electronic energy + Delta-G solvation = -19689.897383 eV Core-core repulsion = 16687.721896 eV Total energy + Delta-G solvation = -3002.175486 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.28539 -40.23352 -37.69300 -37.26208 -34.93614 -33.62404 -31.26622 -27.84617 -27.57660 -26.32154 -23.60658 -23.21557 -22.94969 -21.89919 -20.39406 -19.65847 -18.44910 -17.72878 -17.24179 -16.38113 -16.30318 -15.98444 -15.75709 -15.38072 -15.30328 -14.84652 -14.51907 -14.33822 -13.89260 -13.39444 -13.32325 -13.12889 -12.77957 -12.56004 -12.43092 -12.33488 -12.08068 -11.88147 -11.72538 -11.58296 -11.45600 -11.22919 -10.85359 -10.45684 -10.35084 -9.70625 -9.52298 -8.55301 -6.43814 -0.62679 0.26980 0.77825 1.17465 1.27737 1.36316 1.57424 2.12081 2.29511 2.62601 2.76283 2.95445 3.22820 3.88811 3.89771 3.94361 4.10377 4.11164 4.15083 4.36319 4.45860 4.52608 4.58038 4.66232 4.82128 4.91771 4.97860 5.09736 5.14753 5.21236 5.31582 5.34168 5.45736 5.54052 5.94008 6.06158 6.77905 6.82359 7.17149 7.59056 8.51518 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.020709 B = 0.005959 C = 0.005067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.712792 B = 4697.818969 C = 5524.564334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.126 4.126 3 C 0.101 3.899 4 N -0.462 5.462 5 C -0.349 4.349 6 H 0.090 0.910 7 C 0.043 3.957 8 N -0.886 5.886 9 Si 0.928 3.072 10 H -0.249 1.249 11 H -0.286 1.286 12 H -0.270 1.270 13 C 0.557 3.443 14 O -0.615 6.615 15 C -0.305 4.305 16 C 0.087 3.913 17 N -0.505 5.505 18 C 0.070 3.930 19 C -0.112 4.112 20 C -0.145 4.145 21 C -0.144 4.144 22 S 0.202 5.798 23 H 0.059 0.941 24 H 0.075 0.925 25 H 0.059 0.941 26 H 0.050 0.950 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.069 0.931 30 H 0.284 0.716 31 H 0.213 0.787 32 H 0.156 0.844 33 H 0.083 0.917 34 H 0.132 0.868 35 H 0.137 0.863 36 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.545 -1.494 -7.906 9.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.165 4.165 3 C -0.021 4.021 4 N -0.182 5.182 5 C -0.477 4.477 6 H 0.107 0.893 7 C -0.164 4.164 8 N -0.520 5.520 9 Si 0.753 3.247 10 H -0.174 1.174 11 H -0.212 1.212 12 H -0.194 1.194 13 C 0.347 3.653 14 O -0.502 6.502 15 C -0.428 4.428 16 C -0.069 4.069 17 N -0.220 5.220 18 C -0.204 4.204 19 C -0.134 4.134 20 C -0.184 4.184 21 C -0.183 4.183 22 S 0.461 5.539 23 H 0.079 0.921 24 H 0.094 0.906 25 H 0.078 0.922 26 H 0.069 0.931 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.087 0.913 30 H 0.094 0.906 31 H 0.228 0.772 32 H 0.174 0.826 33 H 0.102 0.898 34 H 0.151 0.849 35 H 0.155 0.845 36 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 5.465 -1.399 -8.923 10.557 hybrid contribution -1.137 0.656 1.465 1.967 sum 4.328 -0.743 -7.457 8.654 Atomic orbital electron populations 1.21684 0.93017 1.02987 1.02223 1.21732 0.97635 0.95441 1.01658 1.21857 0.81097 0.98496 1.00645 1.43475 1.04913 1.64587 1.05190 1.18863 1.23555 1.14020 0.91261 0.89275 1.25989 0.97835 0.97790 0.94821 1.69692 1.38952 1.36887 1.06515 0.86073 0.80552 0.79172 0.78872 1.17375 1.21237 1.19443 1.17311 0.85370 0.78458 0.84119 1.90646 1.70352 1.56698 1.32542 1.25851 0.99093 1.20452 0.97444 1.24418 0.85598 0.94055 1.02804 1.66268 1.18633 1.18236 1.18864 1.27214 1.01167 1.00345 0.91698 1.20865 0.82263 1.08410 1.01843 1.23071 0.98153 0.99687 0.97501 1.23133 1.00165 0.91483 1.03500 1.83263 0.95886 1.66371 1.08421 0.92149 0.90642 0.92223 0.93073 0.91977 0.92288 0.91268 0.90552 0.77176 0.82628 0.89831 0.84947 0.84457 0.90327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.97 9.91 71.98 0.71 -3.25 16 2 C -0.13 -4.65 6.24 30.60 0.19 -4.46 16 3 C 0.10 4.38 3.95 86.38 0.34 4.72 16 4 N -0.46 -22.63 2.02 -640.16 -1.29 -23.93 16 5 C -0.35 -17.93 6.63 84.09 0.56 -17.37 16 6 H 0.09 4.92 6.26 -2.91 -0.02 4.90 16 7 C 0.04 2.19 5.46 84.94 0.46 2.66 16 8 N -0.89 -47.18 13.96 21.67 0.30 -46.88 16 9 Si 0.93 41.29 24.85 68.60 1.70 42.99 16 10 H -0.25 -10.18 7.10 99.48 0.71 -9.47 16 11 H -0.29 -12.60 7.11 99.48 0.71 -11.90 16 12 H -0.27 -12.42 6.48 99.48 0.64 -11.78 16 13 C 0.56 27.94 7.61 86.41 0.66 28.60 16 14 O -0.61 -32.21 16.47 -4.44 -0.07 -32.29 16 15 C -0.31 -14.04 6.44 24.10 0.16 -13.88 16 16 C 0.09 4.03 9.87 84.48 0.83 4.86 16 17 N -0.51 -20.76 9.96 -189.51 -1.89 -22.65 16 18 C 0.07 2.36 6.95 88.47 0.62 2.98 16 19 C -0.11 -2.60 6.28 -11.54 -0.07 -2.67 16 20 C -0.15 -3.01 10.12 30.60 0.31 -2.70 16 21 C -0.14 -2.82 10.23 30.59 0.31 -2.51 16 22 S 0.20 7.23 23.01 -56.49 -1.30 5.93 16 23 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 24 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 25 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 26 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 27 H 0.06 2.37 8.14 -2.38 -0.02 2.35 16 28 H 0.06 2.51 3.72 -2.39 -0.01 2.50 16 29 H 0.07 3.03 7.26 -2.39 -0.02 3.01 16 30 H 0.28 14.16 8.31 -92.71 -0.77 13.39 16 31 H 0.21 10.90 4.31 -2.91 -0.01 10.89 16 32 H 0.16 2.61 8.14 -2.38 -0.02 2.59 16 33 H 0.08 2.23 7.83 -2.38 -0.02 2.21 16 34 H 0.13 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.14 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.08 1.90 8.14 -2.38 -0.02 1.88 16 Total: -1.00 -62.47 311.62 3.57 -58.90 By element: Atomic # 1 Polarization: 19.91 SS G_CDS: 1.04 Total: 20.95 kcal Atomic # 6 Polarization: -8.11 SS G_CDS: 5.08 Total: -3.03 kcal Atomic # 7 Polarization: -90.58 SS G_CDS: -2.88 Total: -93.45 kcal Atomic # 8 Polarization: -32.21 SS G_CDS: -0.07 Total: -32.29 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 1.70 Total: 42.99 kcal Atomic # 16 Polarization: 7.23 SS G_CDS: -1.30 Total: 5.93 kcal Total: -62.47 3.57 -58.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000520516006.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.970 kcal (2) G-P(sol) polarization free energy of solvation -62.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.903 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds