Wall clock time and date at job start Tue Mar 31 2020 01:58:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.08998 * 109.47565 * 305.00629 * 3 2 1 5 5 C 1.50695 * 109.47581 * 185.00152 * 3 2 1 6 6 H 1.08004 * 120.00025 * 240.00388 * 5 3 2 7 7 C 1.37880 * 120.00044 * 59.99984 * 5 3 2 8 8 N 1.31511 * 120.00046 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00012 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.47239 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.46949 * 120.00034 * 9 7 5 12 12 H 1.48495 * 109.47204 * 240.00102 * 9 7 5 13 13 N 1.46504 * 109.46822 * 64.99847 * 3 2 1 14 14 C 1.34773 * 120.00316 * 275.00099 * 13 3 2 15 15 O 1.21686 * 119.99965 * 0.02562 * 14 13 3 16 16 C 1.46685 * 120.00068 * 180.02562 * 14 13 3 17 17 C 1.35659 * 126.12951 * 359.68897 * 16 14 13 18 18 N 1.30943 * 114.19056 * 179.82762 * 17 16 14 19 19 C 1.29428 * 117.36282 * 0.48193 * 18 17 16 20 20 C 1.50706 * 124.80568 * 179.77069 * 19 18 17 21 21 C 1.52995 * 117.49550 * 8.57966 * 20 19 18 22 22 C 1.53006 * 60.00259 * 252.51632 * 21 20 19 23 23 S 1.70945 * 110.39112 * 359.73236 * 19 18 17 24 24 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 25 25 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 27 27 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 28 28 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 29 29 H 0.96998 * 120.00524 * 180.02562 * 8 7 5 30 30 H 0.97003 * 119.99976 * 95.00125 * 13 3 2 31 31 H 1.07997 * 122.90753 * 0.02562 * 17 16 14 32 32 H 1.08990 * 115.55308 * 154.28943 * 20 19 18 33 33 H 1.08999 * 117.50318 * 0.02562 * 21 20 19 34 34 H 1.09006 * 117.49792 * 145.02654 * 21 20 19 35 35 H 1.09002 * 117.49719 * 252.52046 * 22 21 20 36 36 H 1.08992 * 117.52116 * 107.48388 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3375 -2.1734 9 14 6.0049 0.8802 -1.3812 10 1 6.5988 1.5443 -0.1931 11 1 6.4961 -0.5189 -1.4628 12 1 6.3999 1.6158 -2.6092 13 7 1.6524 2.0974 1.2518 14 6 0.4351 2.6643 1.3670 15 8 -0.3422 2.6318 0.4314 16 6 0.0473 3.3206 2.6203 17 6 0.8091 3.4241 3.7380 18 7 0.2311 4.0632 4.7239 19 6 -0.9706 4.5011 4.5257 20 6 -1.7916 5.2513 5.5428 21 6 -1.0919 5.6894 6.8310 22 6 -2.1027 4.5412 6.8619 23 16 -1.4944 4.1090 2.9464 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 3.8292 -0.0609 -2.9500 30 1 2.2719 2.1231 1.9979 31 1 1.8072 3.0175 3.8075 32 1 -2.5557 5.9127 5.1348 33 1 -0.0378 5.4355 6.9427 34 1 -1.3958 6.6394 7.2707 35 1 -3.0716 4.7359 7.3218 36 1 -1.7141 3.5315 6.9939 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000546570496.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:58:16 Heat of formation + Delta-G solvation = 25.395893 kcal Electronic energy + Delta-G solvation = -19129.469733 eV Core-core repulsion = 16127.135027 eV Total energy + Delta-G solvation = -3002.334706 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.05808 -38.83070 -37.00532 -35.10400 -32.54205 -31.34317 -29.87009 -27.13739 -26.26769 -23.23390 -22.84287 -22.61567 -21.33538 -19.70664 -18.99633 -18.20998 -17.14174 -16.20263 -15.68634 -15.25357 -15.00581 -14.55431 -14.37056 -14.11072 -13.88553 -13.23369 -12.72621 -12.43588 -12.11483 -11.77783 -11.59292 -11.46275 -11.29179 -11.03768 -10.99268 -10.88554 -10.86093 -10.35983 -10.23370 -9.88528 -9.65408 -9.33503 -9.19858 -9.08040 -8.75214 -8.54699 -7.91775 -6.16182 -4.25880 0.35961 1.21145 1.76590 2.54655 3.22033 3.30174 3.32740 3.57977 3.74932 3.91889 4.07334 4.35740 4.53129 4.56871 4.71382 5.13544 5.15537 5.22176 5.37251 5.52254 5.52687 5.74802 5.92247 6.08090 6.36016 6.42452 6.61863 7.00378 7.14444 7.28838 7.35490 7.56707 7.63667 7.66935 7.84244 8.12507 8.53691 8.70728 8.98402 9.41244 10.89247 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.030231 B = 0.003933 C = 0.003637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.982476 B = 7117.022766 C = 7696.753717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C 0.271 3.729 4 H 0.052 0.948 5 C -0.535 4.535 6 H 0.063 0.937 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.902 3.098 10 H -0.272 1.272 11 H -0.282 1.282 12 H -0.283 1.283 13 N -0.691 5.691 14 C 0.576 3.424 15 O -0.542 6.542 16 C -0.274 4.274 17 C 0.080 3.920 18 N -0.478 5.478 19 C 0.056 3.944 20 C -0.097 4.097 21 C -0.149 4.149 22 C -0.156 4.156 23 S 0.222 5.778 24 H 0.037 0.963 25 H 0.024 0.976 26 H 0.050 0.950 27 H 0.032 0.968 28 H 0.101 0.899 29 H 0.265 0.735 30 H 0.389 0.611 31 H 0.181 0.819 32 H 0.127 0.873 33 H 0.109 0.891 34 H 0.100 0.900 35 H 0.103 0.897 36 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.090 7.610 15.191 19.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.167 4.167 3 C 0.170 3.830 4 H 0.070 0.930 5 C -0.574 4.574 6 H 0.081 0.919 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.729 3.271 10 H -0.197 1.197 11 H -0.208 1.208 12 H -0.208 1.208 13 N -0.339 5.339 14 C 0.359 3.641 15 O -0.422 6.422 16 C -0.399 4.399 17 C -0.077 4.077 18 N -0.192 5.192 19 C -0.218 4.218 20 C -0.119 4.119 21 C -0.188 4.188 22 C -0.195 4.195 23 S 0.482 5.518 24 H 0.056 0.944 25 H 0.043 0.957 26 H 0.069 0.931 27 H 0.051 0.949 28 H 0.119 0.881 29 H 0.075 0.925 30 H 0.222 0.778 31 H 0.198 0.802 32 H 0.145 0.855 33 H 0.127 0.873 34 H 0.119 0.881 35 H 0.121 0.879 36 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -10.316 7.749 14.197 19.184 hybrid contribution 2.268 -0.446 0.225 2.322 sum -8.049 7.303 14.422 18.059 Atomic orbital electron populations 1.21849 0.98331 0.98177 1.01202 1.21946 0.92638 0.99604 1.02474 1.18889 0.94438 0.89240 0.80455 0.92997 1.21247 0.90489 1.39203 1.06448 0.91921 1.24881 0.98713 0.94710 0.95313 1.69897 1.35115 1.37507 1.09323 0.86383 0.84701 0.77806 0.78166 1.19699 1.20834 1.20850 1.46356 1.13655 1.55041 1.18824 1.16717 0.83427 0.79158 0.84794 1.90816 1.51421 1.60489 1.39464 1.26223 0.99587 1.12135 1.01952 1.22126 1.01185 0.97599 0.86821 1.65979 1.08261 1.12735 1.32224 1.26389 0.94613 1.02220 0.98615 1.20502 1.01364 1.02829 0.87196 1.23007 0.99620 0.98883 0.97312 1.23051 1.00862 0.98381 0.97190 1.83939 1.13810 1.46939 1.07157 0.94430 0.95698 0.93054 0.94891 0.88073 0.92538 0.77811 0.80174 0.85474 0.87303 0.88120 0.87874 0.88245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 8.51 37.16 0.32 -2.77 16 2 C -0.13 -3.08 5.45 -26.73 -0.15 -3.23 16 3 C 0.27 6.74 2.24 -69.08 -0.15 6.59 16 4 H 0.05 1.49 7.58 -51.93 -0.39 1.10 16 5 C -0.54 -13.93 8.73 -34.44 -0.30 -14.23 16 6 H 0.06 1.56 7.74 -52.48 -0.41 1.16 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.37 11.29 55.43 0.63 -23.74 16 9 Si 0.90 20.40 29.54 -169.99 -5.02 15.38 16 10 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 11 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 12 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 13 N -0.69 -14.34 5.00 -56.24 -0.28 -14.62 16 14 C 0.58 11.75 6.35 -12.85 -0.08 11.67 16 15 O -0.54 -12.75 14.10 5.20 0.07 -12.67 16 16 C -0.27 -4.56 6.48 -37.10 -0.24 -4.80 16 17 C 0.08 1.17 10.93 -18.85 -0.21 0.97 16 18 N -0.48 -6.73 9.98 -11.50 -0.11 -6.85 16 19 C 0.06 0.70 6.96 -13.29 -0.09 0.61 16 20 C -0.10 -0.89 6.28 -91.77 -0.58 -1.47 16 21 C -0.15 -1.20 10.12 -26.73 -0.27 -1.47 16 22 C -0.16 -1.21 10.24 -26.72 -0.27 -1.48 16 23 S 0.22 3.08 23.01 -107.50 -2.47 0.60 16 24 H 0.04 0.82 5.64 -51.93 -0.29 0.53 16 25 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.05 1.22 7.84 -51.93 -0.41 0.81 16 27 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.10 2.69 5.95 -51.93 -0.31 2.38 16 29 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 30 H 0.39 6.98 7.25 -40.82 -0.30 6.69 16 31 H 0.18 2.28 7.15 -52.49 -0.38 1.91 16 32 H 0.13 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.11 1.04 7.84 -51.93 -0.41 0.63 16 34 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 315.97 15.07 4.76 4.76 Total: -1.00 -30.10 315.97 -9.11 -39.21 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -4.56 Total: 5.87 kcal Atomic # 6 Polarization: -5.82 SS G_CDS: -2.12 Total: -7.94 kcal Atomic # 7 Polarization: -45.44 SS G_CDS: 0.23 Total: -45.21 kcal Atomic # 8 Polarization: -12.75 SS G_CDS: 0.07 Total: -12.67 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Atomic # 16 Polarization: 3.08 SS G_CDS: -2.47 Total: 0.60 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -30.10 -9.11 -39.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000546570496.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.604 kcal (2) G-P(sol) polarization free energy of solvation -30.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds