Wall clock time and date at job start Tue Mar 31 2020 01:58:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.08998 * 109.47565 * 305.00629 * 3 2 1 5 5 C 1.50695 * 109.47581 * 185.00152 * 3 2 1 6 6 H 1.08004 * 120.00025 * 240.00388 * 5 3 2 7 7 C 1.37880 * 120.00044 * 59.99984 * 5 3 2 8 8 N 1.31511 * 120.00046 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00012 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.47239 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.46949 * 120.00034 * 9 7 5 12 12 H 1.48495 * 109.47204 * 240.00102 * 9 7 5 13 13 N 1.46504 * 109.46822 * 64.99847 * 3 2 1 14 14 C 1.34773 * 120.00316 * 275.00099 * 13 3 2 15 15 O 1.21686 * 119.99965 * 0.02562 * 14 13 3 16 16 C 1.46685 * 120.00068 * 180.02562 * 14 13 3 17 17 C 1.35659 * 126.12951 * 359.68897 * 16 14 13 18 18 N 1.30943 * 114.19056 * 179.82762 * 17 16 14 19 19 C 1.29428 * 117.36282 * 0.48193 * 18 17 16 20 20 C 1.50706 * 124.80568 * 179.77069 * 19 18 17 21 21 C 1.52995 * 117.49550 * 8.57966 * 20 19 18 22 22 C 1.53006 * 60.00259 * 252.51632 * 21 20 19 23 23 S 1.70945 * 110.39112 * 359.73236 * 19 18 17 24 24 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 25 25 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 27 27 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 28 28 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 29 29 H 0.96998 * 120.00524 * 180.02562 * 8 7 5 30 30 H 0.97003 * 119.99976 * 95.00125 * 13 3 2 31 31 H 1.07997 * 122.90753 * 0.02562 * 17 16 14 32 32 H 1.08990 * 115.55308 * 154.28943 * 20 19 18 33 33 H 1.08999 * 117.50318 * 0.02562 * 21 20 19 34 34 H 1.09006 * 117.49792 * 145.02654 * 21 20 19 35 35 H 1.09002 * 117.49719 * 252.52046 * 22 21 20 36 36 H 1.08992 * 117.52116 * 107.48388 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3375 -2.1734 9 14 6.0049 0.8802 -1.3812 10 1 6.5988 1.5443 -0.1931 11 1 6.4961 -0.5189 -1.4628 12 1 6.3999 1.6158 -2.6092 13 7 1.6524 2.0974 1.2518 14 6 0.4351 2.6643 1.3670 15 8 -0.3422 2.6318 0.4314 16 6 0.0473 3.3206 2.6203 17 6 0.8091 3.4241 3.7380 18 7 0.2311 4.0632 4.7239 19 6 -0.9706 4.5011 4.5257 20 6 -1.7916 5.2513 5.5428 21 6 -1.0919 5.6894 6.8310 22 6 -2.1027 4.5412 6.8619 23 16 -1.4944 4.1090 2.9464 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 3.8292 -0.0609 -2.9500 30 1 2.2719 2.1231 1.9979 31 1 1.8072 3.0175 3.8075 32 1 -2.5557 5.9127 5.1348 33 1 -0.0378 5.4355 6.9427 34 1 -1.3958 6.6394 7.2707 35 1 -3.0716 4.7359 7.3218 36 1 -1.7141 3.5315 6.9939 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000546570496.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:58:15 Heat of formation + Delta-G solvation = 6.463958 kcal Electronic energy + Delta-G solvation = -19130.290683 eV Core-core repulsion = 16127.135027 eV Total energy + Delta-G solvation = -3003.155656 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.28921 -40.32907 -37.78843 -36.97130 -34.40262 -33.12212 -31.25036 -28.91553 -27.49650 -25.08360 -23.97273 -23.22663 -22.75883 -21.46849 -20.48840 -19.26833 -18.67774 -17.68135 -17.22949 -16.55385 -16.50210 -16.14728 -15.58841 -15.29958 -15.08377 -14.82751 -14.58693 -13.88741 -13.53381 -13.22552 -13.16626 -12.92346 -12.72060 -12.59681 -12.34256 -12.19282 -12.08743 -11.82729 -11.66097 -11.57382 -11.14616 -11.07554 -10.61047 -10.53818 -10.49561 -9.90170 -9.66019 -8.17859 -6.35244 -0.79673 0.09149 0.65070 1.38330 1.44092 1.45594 1.57110 2.21870 2.34384 2.59053 2.85890 3.05605 3.12103 3.74209 3.86827 3.91450 4.08330 4.19949 4.32731 4.46534 4.53862 4.72285 4.82730 4.90100 4.98213 5.03788 5.17462 5.22554 5.32550 5.39753 5.48633 5.57489 5.75181 5.86104 6.13004 6.52279 6.70879 6.82762 7.27434 7.43144 8.87896 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.030231 B = 0.003933 C = 0.003637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.982476 B = 7117.022766 C = 7696.753717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.121 4.121 3 C 0.280 3.720 4 H 0.003 0.997 5 C -0.549 4.549 6 H 0.073 0.927 7 C 0.017 3.983 8 N -0.913 5.913 9 Si 0.971 3.029 10 H -0.261 1.261 11 H -0.278 1.278 12 H -0.284 1.284 13 N -0.690 5.690 14 C 0.579 3.421 15 O -0.582 6.582 16 C -0.319 4.319 17 C 0.103 3.897 18 N -0.495 5.495 19 C 0.079 3.921 20 C -0.118 4.118 21 C -0.143 4.143 22 C -0.143 4.143 23 S 0.230 5.770 24 H 0.039 0.961 25 H 0.047 0.953 26 H 0.027 0.973 27 H 0.042 0.958 28 H 0.075 0.925 29 H 0.266 0.734 30 H 0.403 0.597 31 H 0.197 0.803 32 H 0.153 0.847 33 H 0.092 0.908 34 H 0.127 0.873 35 H 0.132 0.868 36 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.109 8.550 17.909 21.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.160 4.160 3 C 0.177 3.823 4 H 0.021 0.979 5 C -0.587 4.587 6 H 0.091 0.909 7 C -0.183 4.183 8 N -0.552 5.552 9 Si 0.796 3.204 10 H -0.185 1.185 11 H -0.204 1.204 12 H -0.210 1.210 13 N -0.338 5.338 14 C 0.365 3.635 15 O -0.465 6.465 16 C -0.443 4.443 17 C -0.056 4.056 18 N -0.210 5.210 19 C -0.194 4.194 20 C -0.139 4.139 21 C -0.182 4.182 22 C -0.183 4.183 23 S 0.491 5.509 24 H 0.058 0.942 25 H 0.066 0.934 26 H 0.047 0.953 27 H 0.061 0.939 28 H 0.094 0.906 29 H 0.075 0.925 30 H 0.239 0.761 31 H 0.214 0.786 32 H 0.170 0.830 33 H 0.110 0.890 34 H 0.145 0.855 35 H 0.150 0.850 36 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -10.341 8.700 16.946 21.675 hybrid contribution 2.181 -0.652 -0.497 2.330 sum -8.160 8.047 16.450 20.048 Atomic orbital electron populations 1.21686 0.97074 0.99265 1.00146 1.21797 0.93675 0.98965 1.01565 1.18471 0.93922 0.89234 0.80704 0.97940 1.21579 0.91145 1.39138 1.06870 0.90937 1.25750 1.03323 0.94287 0.94947 1.70043 1.37029 1.38230 1.09854 0.85314 0.79063 0.77856 0.78202 1.18487 1.20383 1.21029 1.46067 1.14494 1.55237 1.18007 1.17072 0.82535 0.78299 0.85602 1.90786 1.52426 1.61976 1.41288 1.25749 1.02033 1.15466 1.01068 1.22422 1.01426 0.95735 0.86001 1.66125 1.09034 1.13931 1.31887 1.27130 0.94097 0.99779 0.98388 1.20879 1.02135 1.03817 0.87111 1.23093 0.98848 1.00276 0.95966 1.23155 1.02103 0.97643 0.95356 1.83871 1.12476 1.46602 1.07983 0.94215 0.93377 0.95333 0.93905 0.90617 0.92510 0.76133 0.78594 0.82981 0.88990 0.85469 0.85029 0.89563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.68 8.51 71.98 0.61 -5.07 16 2 C -0.12 -5.98 5.45 30.59 0.17 -5.82 16 3 C 0.28 14.38 2.24 44.24 0.10 14.48 16 4 H 0.00 0.16 7.58 -2.39 -0.02 0.15 16 5 C -0.55 -28.90 8.73 25.60 0.22 -28.68 16 6 H 0.07 3.58 7.74 -2.91 -0.02 3.56 16 7 C 0.02 0.92 5.29 84.66 0.45 1.37 16 8 N -0.91 -51.86 11.29 21.45 0.24 -51.62 16 9 Si 0.97 41.86 29.54 68.60 2.03 43.88 16 10 H -0.26 -10.67 7.11 99.48 0.71 -9.97 16 11 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 12 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 13 N -0.69 -29.15 5.00 -450.08 -2.25 -31.40 16 14 C 0.58 24.20 6.35 86.45 0.55 24.75 16 15 O -0.58 -28.53 14.10 -4.30 -0.06 -28.59 16 16 C -0.32 -10.56 6.48 23.88 0.15 -10.40 16 17 C 0.10 2.90 10.93 84.23 0.92 3.82 16 18 N -0.50 -13.10 9.98 -190.30 -1.90 -15.00 16 19 C 0.08 1.84 6.96 88.46 0.62 2.46 16 20 C -0.12 -1.78 6.28 -11.54 -0.07 -1.86 16 21 C -0.14 -1.82 10.12 30.59 0.31 -1.51 16 22 C -0.14 -1.73 10.24 30.60 0.31 -1.41 16 23 S 0.23 6.18 23.01 -56.49 -1.30 4.88 16 24 H 0.04 1.77 5.64 -2.39 -0.01 1.76 16 25 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 26 H 0.03 1.39 7.84 -2.38 -0.02 1.37 16 27 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 28 H 0.08 4.16 5.95 -2.39 -0.01 4.14 16 29 H 0.27 14.25 8.31 -92.71 -0.77 13.48 16 30 H 0.40 14.42 7.25 -92.71 -0.67 13.75 16 31 H 0.20 4.67 7.15 -2.91 -0.02 4.65 16 32 H 0.15 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.09 1.54 7.84 -2.39 -0.02 1.52 16 34 H 0.13 0.97 8.14 -2.38 -0.02 0.95 16 35 H 0.13 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -66.89 315.97 1.53 -65.36 By element: Atomic # 1 Polarization: 19.91 SS G_CDS: 0.44 Total: 20.34 kcal Atomic # 6 Polarization: -12.20 SS G_CDS: 4.34 Total: -7.86 kcal Atomic # 7 Polarization: -94.10 SS G_CDS: -3.91 Total: -98.01 kcal Atomic # 8 Polarization: -28.53 SS G_CDS: -0.06 Total: -28.59 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 2.03 Total: 43.88 kcal Atomic # 16 Polarization: 6.18 SS G_CDS: -1.30 Total: 4.88 kcal Total: -66.89 1.53 -65.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000546570496.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.824 kcal (2) G-P(sol) polarization free energy of solvation -66.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds