Wall clock time and date at job start Tue Mar 31 2020 01:42:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30991 * 1 3 3 C 1.50700 * 120.00177 * 2 1 4 4 N 1.46494 * 109.47312 * 124.99721 * 3 2 1 5 5 C 1.46505 * 120.00200 * 262.42034 * 4 3 2 6 6 C 1.50699 * 109.46887 * 270.00300 * 5 4 3 7 7 H 1.08001 * 120.00196 * 359.97438 * 6 5 4 8 8 C 1.37884 * 120.00003 * 180.02562 * 6 5 4 9 9 N 1.31513 * 119.99523 * 359.97438 * 8 6 5 10 10 Si 1.86794 * 120.00097 * 179.97438 * 8 6 5 11 11 H 1.48507 * 109.47164 * 89.99828 * 10 8 6 12 12 H 1.48501 * 109.47202 * 209.99471 * 10 8 6 13 13 H 1.48499 * 109.47276 * 329.99930 * 10 8 6 14 14 C 1.34773 * 120.00096 * 82.42456 * 4 3 2 15 15 O 1.21685 * 120.00176 * 182.23316 * 14 4 3 16 16 C 1.46683 * 120.00158 * 2.22813 * 14 4 3 17 17 C 1.35667 * 126.13469 * 172.36986 * 16 14 4 18 18 N 1.30940 * 114.18848 * 180.23295 * 17 16 14 19 19 C 1.29427 * 117.36664 * 359.54751 * 18 17 16 20 20 C 1.50703 * 124.80367 * 180.17821 * 19 18 17 21 21 C 1.53004 * 109.46733 * 90.28745 * 20 19 18 22 22 S 1.70949 * 110.39106 * 0.43181 * 19 18 17 23 23 H 1.07996 * 120.00399 * 0.02562 * 1 2 3 24 24 H 1.08003 * 120.00136 * 180.02562 * 1 2 3 25 25 H 1.08004 * 120.00060 * 179.97438 * 2 1 3 26 26 H 1.09007 * 109.47001 * 4.99554 * 3 2 1 27 27 H 1.09003 * 109.47377 * 245.00067 * 3 2 1 28 28 H 1.08997 * 109.46789 * 29.99994 * 5 4 3 29 29 H 1.08996 * 109.47230 * 150.00366 * 5 4 3 30 30 H 0.97009 * 119.99628 * 180.02562 * 9 8 6 31 31 H 1.07993 * 122.89930 * 359.95287 * 17 16 14 32 32 H 1.08996 * 109.47260 * 210.29238 * 20 19 18 33 33 H 1.09000 * 109.47093 * 330.29249 * 20 19 18 34 34 H 1.09005 * 109.46621 * 180.02562 * 21 20 19 35 35 H 1.08993 * 109.47173 * 299.99677 * 21 20 19 36 36 H 1.09000 * 109.46919 * 60.00397 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9936 1.3319 1.1314 5 6 2.6178 2.0131 2.3728 6 6 3.0526 3.4545 2.3063 7 1 3.5586 3.8259 1.4274 8 6 2.8052 4.2989 3.3678 9 7 2.1894 3.8465 4.4382 10 14 3.3448 6.0854 3.2857 11 1 2.2538 6.9056 2.7005 12 1 3.6512 6.5733 4.6543 13 1 4.5581 6.1975 2.4369 14 6 4.1952 0.7300 1.0303 15 8 4.9515 0.7172 1.9836 16 6 4.5915 0.0903 -0.2288 17 6 5.8152 -0.4201 -0.5164 18 7 5.9134 -0.9345 -1.7165 19 6 4.8577 -0.9052 -2.4646 20 6 4.7819 -1.4511 -3.8672 21 6 4.3445 -2.9166 -3.8211 22 16 3.5633 -0.1533 -1.6390 23 1 -0.5400 0.9352 -0.0004 24 1 -0.5400 -0.9353 0.0004 25 1 1.8499 -0.9353 0.0004 26 1 1.3585 2.1317 0.0895 27 1 2.6213 1.4026 -0.9314 28 1 1.5363 1.9653 2.5003 29 1 3.1051 1.5252 3.2169 30 1 2.0151 4.4407 5.1849 31 1 6.6383 -0.3994 0.1824 32 1 4.0587 -0.8739 -4.4432 33 1 5.7622 -1.3792 -4.3385 34 1 4.2902 -3.3116 -4.8356 35 1 5.0679 -3.4937 -3.2452 36 1 3.3643 -2.9885 -3.3498 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000561015895.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:42:07 Heat of formation + Delta-G solvation = 9.566263 kcal Electronic energy + Delta-G solvation = -19491.344741 eV Core-core repulsion = 16488.323611 eV Total energy + Delta-G solvation = -3003.021130 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.23050 -40.30921 -37.42134 -35.30723 -34.81701 -33.80113 -31.30698 -29.41620 -27.42584 -26.79487 -25.17597 -23.66608 -22.26056 -21.05294 -19.78041 -19.33633 -18.65612 -17.78910 -17.32152 -16.61571 -16.49949 -15.99955 -15.65673 -15.49476 -14.93902 -14.85810 -14.47739 -14.31716 -14.01456 -13.45628 -13.40542 -13.18586 -13.02528 -12.62591 -12.58775 -12.47861 -12.33871 -12.24731 -12.01899 -11.74687 -11.05687 -10.70073 -10.66327 -10.49420 -10.26289 -9.83030 -9.54450 -8.25649 -6.40697 -0.75632 0.17904 0.61844 1.23160 1.35872 1.39224 1.45565 1.50456 2.09579 2.28034 2.39523 3.04440 3.08973 3.52499 3.89112 3.93821 4.07176 4.20817 4.23880 4.31449 4.34999 4.68533 4.71280 4.92593 4.99863 5.02209 5.03565 5.12671 5.16605 5.36558 5.41457 5.63933 5.69734 5.82201 5.99820 6.45442 6.63771 6.66964 7.11348 7.31656 8.81903 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.024211 B = 0.004956 C = 0.004531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.234447 B = 5647.826132 C = 6177.598347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.204 4.204 3 C 0.124 3.876 4 N -0.590 5.590 5 C 0.265 3.735 6 C -0.549 4.549 7 H 0.052 0.948 8 C 0.013 3.987 9 N -0.925 5.925 10 Si 0.968 3.032 11 H -0.260 1.260 12 H -0.280 1.280 13 H -0.275 1.275 14 C 0.576 3.424 15 O -0.582 6.582 16 C -0.325 4.325 17 C 0.112 3.888 18 N -0.505 5.505 19 C 0.019 3.981 20 C -0.051 4.051 21 C -0.144 4.144 22 S 0.272 5.728 23 H 0.108 0.892 24 H 0.125 0.875 25 H 0.112 0.888 26 H 0.104 0.896 27 H 0.090 0.910 28 H 0.033 0.967 29 H 0.002 0.998 30 H 0.269 0.731 31 H 0.175 0.825 32 H 0.114 0.886 33 H 0.097 0.903 34 H 0.092 0.908 35 H 0.045 0.955 36 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.353 -10.491 -19.804 22.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.224 4.224 3 C 0.000 4.000 4 N -0.319 5.319 5 C 0.145 3.855 6 C -0.587 4.587 7 H 0.071 0.929 8 C -0.187 4.187 9 N -0.564 5.564 10 Si 0.792 3.208 11 H -0.185 1.185 12 H -0.205 1.205 13 H -0.200 1.200 14 C 0.364 3.636 15 O -0.464 6.464 16 C -0.449 4.449 17 C -0.046 4.046 18 N -0.220 5.220 19 C -0.253 4.253 20 C -0.091 4.091 21 C -0.203 4.203 22 S 0.532 5.468 23 H 0.126 0.874 24 H 0.144 0.856 25 H 0.130 0.870 26 H 0.122 0.878 27 H 0.107 0.893 28 H 0.051 0.949 29 H 0.020 0.980 30 H 0.078 0.922 31 H 0.192 0.808 32 H 0.132 0.868 33 H 0.116 0.884 34 H 0.111 0.889 35 H 0.065 0.935 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.624 -10.441 -19.663 22.556 hybrid contribution 1.375 0.983 1.513 2.269 sum -2.249 -9.458 -18.149 20.589 Atomic orbital electron populations 1.24136 0.94680 1.03697 0.95359 1.23214 0.97307 0.97220 1.04637 1.21144 0.92732 0.98355 0.87787 1.48093 1.15029 1.52165 1.16574 1.18842 0.95076 0.90839 0.80756 1.21663 1.38865 0.95476 1.02706 0.92927 1.25815 0.94768 1.03636 0.94447 1.70045 1.42115 1.37694 1.06520 0.85416 0.78862 0.78958 0.77584 1.18491 1.20536 1.20042 1.17292 0.81825 0.78257 0.86194 1.90755 1.53058 1.62374 1.40260 1.25707 1.01162 1.16561 1.01482 1.22112 0.96117 0.93443 0.92953 1.66357 1.30507 1.20878 1.04226 1.28874 0.94425 0.98857 1.03178 1.20515 1.05275 0.97655 0.85705 1.21778 1.01385 0.93225 1.03903 1.84168 1.11607 1.49251 1.01776 0.87380 0.85649 0.87043 0.87796 0.89333 0.94926 0.97980 0.92233 0.80756 0.86777 0.88428 0.88888 0.93532 0.91971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 14.32 67.79 0.97 -1.96 16 2 C -0.20 -5.30 7.97 25.66 0.20 -5.10 16 3 C 0.12 3.99 5.43 85.63 0.46 4.46 16 4 N -0.59 -26.27 2.46 -835.23 -2.06 -28.33 16 5 C 0.27 14.45 5.14 85.63 0.44 14.90 16 6 C -0.55 -31.74 9.39 25.60 0.24 -31.50 16 7 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16 8 C 0.01 0.74 5.46 84.66 0.46 1.21 16 9 N -0.92 -55.45 13.29 21.45 0.28 -55.17 16 10 Si 0.97 44.75 29.54 68.60 2.03 46.77 16 11 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 12 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 13 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 14 C 0.58 26.59 7.57 86.45 0.65 27.25 16 15 O -0.58 -32.34 16.44 -4.30 -0.07 -32.41 16 16 C -0.33 -11.63 6.24 23.88 0.15 -11.48 16 17 C 0.11 3.84 11.10 84.23 0.93 4.77 16 18 N -0.50 -15.01 10.51 -190.31 -2.00 -17.01 16 19 C 0.02 0.45 6.64 88.46 0.59 1.04 16 20 C -0.05 -0.71 6.51 29.85 0.19 -0.51 16 21 C -0.14 -1.69 9.89 71.98 0.71 -0.98 16 22 S 0.27 6.50 15.88 -56.49 -0.90 5.60 16 23 H 0.11 2.14 7.84 -2.91 -0.02 2.11 16 24 H 0.13 1.98 8.06 -2.91 -0.02 1.95 16 25 H 0.11 2.87 6.98 -2.91 -0.02 2.85 16 26 H 0.10 3.33 7.67 -2.38 -0.02 3.31 16 27 H 0.09 2.53 4.48 -20.97 -0.09 2.44 16 28 H 0.03 1.77 8.07 -2.39 -0.02 1.75 16 29 H 0.00 0.13 7.39 -2.39 -0.02 0.11 16 30 H 0.27 15.07 8.31 -92.70 -0.77 14.30 16 31 H 0.18 6.04 8.06 -2.91 -0.02 6.02 16 32 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.09 0.65 8.14 -2.38 -0.02 0.63 16 35 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 Total: -1.00 -75.10 320.48 4.29 -70.81 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: 0.99 Total: 7.65 kcal Atomic # 6 Polarization: -3.92 SS G_CDS: 6.02 Total: 2.09 kcal Atomic # 7 Polarization: -96.74 SS G_CDS: -3.77 Total: -100.51 kcal Atomic # 8 Polarization: -32.34 SS G_CDS: -0.07 Total: -32.41 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.77 kcal Atomic # 16 Polarization: 6.50 SS G_CDS: -0.90 Total: 5.60 kcal Total: -75.10 4.29 -70.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000561015895.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.373 kcal (2) G-P(sol) polarization free energy of solvation -75.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.807 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds