Wall clock time and date at job start Tue Mar 31 2020 01:37:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50701 * 109.47497 * 2 1 4 4 C 1.38251 * 120.36007 * 125.02043 * 3 2 1 5 5 C 1.39413 * 118.51727 * 179.97438 * 4 3 2 6 6 O 1.35513 * 120.46602 * 180.02562 * 5 4 3 7 7 N 1.32741 * 119.07401 * 359.74188 * 5 4 3 8 8 C 1.32520 * 120.63846 * 0.53246 * 7 5 4 9 9 S 1.76207 * 119.19642 * 179.72309 * 8 7 5 10 10 C 1.81000 * 99.99637 * 359.73460 * 9 8 7 11 11 C 1.52999 * 109.47133 * 179.97438 * 10 9 8 12 12 C 1.50701 * 115.55129 * 294.86945 * 11 10 9 13 13 H 1.08003 * 119.99418 * 95.17062 * 12 11 10 14 14 C 1.37872 * 120.00156 * 275.44880 * 12 11 10 15 15 N 1.31519 * 119.99817 * 5.74497 * 14 12 11 16 16 Si 1.86793 * 119.99973 * 185.74971 * 14 12 11 17 17 H 1.48501 * 109.47393 * 90.00085 * 16 14 12 18 18 H 1.48500 * 109.46988 * 209.99610 * 16 14 12 19 19 H 1.48499 * 109.47227 * 329.99853 * 16 14 12 20 20 C 1.53005 * 117.49771 * 80.53657 * 11 10 9 21 21 C 1.53002 * 117.50137 * 149.19696 * 11 10 9 22 22 N 1.32414 * 120.36242 * 305.00321 * 3 2 1 23 23 H 1.09001 * 109.47131 * 59.99576 * 1 2 3 24 24 H 1.09000 * 109.47430 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46691 * 300.00089 * 1 2 3 26 26 H 1.09003 * 109.46691 * 239.99911 * 2 1 3 27 27 H 1.09001 * 109.47131 * 120.00423 * 2 1 3 28 28 H 1.08002 * 120.74439 * 359.96246 * 4 3 2 29 29 H 0.96704 * 113.99797 * 89.99752 * 6 5 4 30 30 H 1.08999 * 109.47760 * 60.00054 * 10 9 8 31 31 H 1.09007 * 109.47181 * 299.99837 * 10 9 8 32 32 H 0.96999 * 119.99725 * 174.98549 * 15 14 12 33 33 H 1.09002 * 117.50085 * 215.00267 * 20 11 10 34 34 H 1.09000 * 117.50084 * 0.02955 * 20 11 10 35 35 H 1.09004 * 117.49591 * 359.97438 * 21 11 10 36 36 H 1.08993 * 117.49901 * 144.97508 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.9108 1.8513 0.9769 5 6 3.3515 3.1735 0.9399 6 8 4.2131 3.6370 1.8776 7 7 2.9199 3.9704 -0.0300 8 6 2.0735 3.5221 -0.9459 9 16 1.5194 4.6149 -2.2122 10 6 2.4051 6.1204 -1.7378 11 6 2.0701 7.2413 -2.7238 12 6 2.5393 7.0237 -4.1393 13 1 1.8678 6.6005 -4.8716 14 6 3.8275 7.3595 -4.4978 15 7 4.6809 7.7632 -3.5822 16 14 4.3607 7.2414 -6.2842 17 1 4.0988 8.5346 -6.9656 18 1 5.8119 6.9332 -6.3482 19 1 3.5953 6.1624 -6.9589 20 6 0.7485 7.9861 -2.5243 21 6 2.0739 8.6756 -2.1909 22 7 1.6377 2.2703 -0.9359 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 3.2479 1.1786 1.7517 29 1 5.1450 3.5300 1.6426 30 1 3.4784 5.9312 -1.7545 31 1 2.1041 6.4177 -0.7332 32 1 5.6061 7.9297 -3.8213 33 1 0.2185 8.3187 -3.4168 34 1 0.1180 7.6779 -1.6903 35 1 2.3148 8.8205 -1.1378 36 1 2.4163 9.4616 -2.8640 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594894140.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:47 Heat of formation + Delta-G solvation = 18.767202 kcal Electronic energy + Delta-G solvation = -19096.862415 eV Core-core repulsion = 16094.240267 eV Total energy + Delta-G solvation = -3002.622148 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.86259 -37.62508 -36.61713 -34.89102 -31.98176 -31.83970 -30.68146 -27.71668 -25.44340 -24.87529 -24.37685 -21.90617 -21.14751 -19.52339 -18.64308 -17.62901 -16.92598 -15.95733 -15.60217 -15.26348 -14.74752 -14.64690 -14.33450 -13.88077 -13.69730 -13.49111 -12.94877 -12.61917 -12.09750 -11.96915 -11.70444 -11.51893 -11.30518 -11.06959 -10.94059 -10.66996 -10.51545 -10.20799 -10.20204 -9.83651 -9.74724 -9.60179 -9.12722 -8.89110 -8.49920 -8.07836 -7.10488 -6.06938 -4.14864 0.89920 1.12314 1.83460 2.96577 3.28410 3.35573 3.39618 3.51826 3.81590 4.18559 4.38328 4.69688 5.02438 5.04110 5.13009 5.17753 5.21279 5.32731 5.40566 5.60665 5.71143 5.90297 5.97942 6.12580 6.22221 6.25409 6.40748 6.51310 6.71802 6.84477 7.06451 7.07174 7.36965 7.39075 7.45707 7.84868 8.10415 8.33473 8.87058 9.52022 11.01090 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.019631 B = 0.004763 C = 0.004638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.978014 B = 5877.238744 C = 6035.756270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.071 4.071 3 C 0.201 3.799 4 C -0.272 4.272 5 C 0.376 3.624 6 O -0.479 6.479 7 N -0.546 5.546 8 C 0.321 3.679 9 S 0.035 5.965 10 C -0.049 4.049 11 C 0.047 3.953 12 C -0.496 4.496 13 H 0.064 0.936 14 C 0.075 3.925 15 N -0.877 5.877 16 Si 0.890 3.110 17 H -0.280 1.280 18 H -0.287 1.287 19 H -0.271 1.271 20 C -0.208 4.208 21 C -0.142 4.142 22 N -0.513 5.513 23 H 0.070 0.930 24 H 0.060 0.940 25 H 0.052 0.948 26 H 0.089 0.911 27 H 0.081 0.919 28 H 0.145 0.855 29 H 0.407 0.593 30 H 0.099 0.901 31 H 0.063 0.937 32 H 0.261 0.739 33 H 0.081 0.919 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.886 -12.613 8.773 15.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.109 4.109 3 C 0.052 3.948 4 C -0.301 4.301 5 C 0.184 3.816 6 O -0.287 6.287 7 N -0.275 5.275 8 C -0.052 4.052 9 S 0.276 5.724 10 C -0.198 4.198 11 C 0.044 3.956 12 C -0.534 4.534 13 H 0.082 0.918 14 C -0.129 4.129 15 N -0.513 5.513 16 Si 0.717 3.283 17 H -0.206 1.206 18 H -0.213 1.213 19 H -0.196 1.196 20 C -0.246 4.246 21 C -0.182 4.182 22 N -0.233 5.233 23 H 0.089 0.911 24 H 0.079 0.921 25 H 0.071 0.929 26 H 0.107 0.893 27 H 0.100 0.900 28 H 0.163 0.837 29 H 0.266 0.734 30 H 0.117 0.883 31 H 0.082 0.918 32 H 0.071 0.929 33 H 0.100 0.900 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -4.246 -11.849 7.418 14.610 hybrid contribution 2.283 -0.376 0.835 2.460 sum -1.963 -12.225 8.253 14.880 Atomic orbital electron populations 1.21675 0.93599 1.01858 1.03095 1.20528 0.97432 0.89474 1.03502 1.21612 0.89123 0.96087 0.88028 1.22512 1.06625 0.96688 1.04235 1.19463 0.89614 0.87203 0.85288 1.84678 1.19974 1.84720 1.39281 1.68491 1.15639 1.38939 1.04437 1.25622 0.90563 0.93268 0.95721 1.86118 1.55526 1.04386 1.26381 1.23416 1.03357 0.92923 1.00069 1.18558 0.94662 0.87959 0.94384 1.20392 0.97781 1.42736 0.92470 0.91772 1.24972 0.96659 0.94087 0.97200 1.69987 1.03597 1.44808 1.32946 0.86626 0.77763 0.78549 0.85318 1.20555 1.21278 1.19611 1.23077 0.91431 1.08647 1.01407 1.22566 0.98930 0.97817 0.98880 1.68390 1.26367 1.02610 1.25921 0.91104 0.92090 0.92874 0.89296 0.89994 0.83684 0.73427 0.88264 0.91828 0.92920 0.90033 0.91332 0.91656 0.89636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 9.78 37.16 0.36 -1.02 16 2 C -0.07 -0.69 6.36 -27.88 -0.18 -0.87 16 3 C 0.20 2.81 6.20 -82.34 -0.51 2.30 16 4 C -0.27 -3.58 9.75 -39.14 -0.38 -3.97 16 5 C 0.38 5.95 7.83 -16.72 -0.13 5.81 16 6 O -0.48 -6.37 13.57 -18.23 -0.25 -6.62 16 7 N -0.55 -10.55 9.16 -13.50 -0.12 -10.67 16 8 C 0.32 6.30 7.85 -90.87 -0.71 5.59 16 9 S 0.03 0.73 21.93 -107.50 -2.36 -1.63 16 10 C -0.05 -1.11 4.66 37.16 0.17 -0.94 16 11 C 0.05 1.13 1.33 -155.66 -0.21 0.93 16 12 C -0.50 -13.16 8.48 -34.44 -0.29 -13.45 16 13 H 0.06 1.72 7.82 -52.48 -0.41 1.31 16 14 C 0.07 2.00 5.39 -17.82 -0.10 1.91 16 15 N -0.88 -24.34 12.93 55.43 0.72 -23.62 16 16 Si 0.89 20.89 29.54 -169.99 -5.02 15.87 16 17 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 18 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 19 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 20 C -0.21 -4.48 9.96 -26.69 -0.27 -4.75 16 21 C -0.14 -3.27 9.45 -26.69 -0.25 -3.53 16 22 N -0.51 -8.99 9.99 -9.73 -0.10 -9.08 16 23 H 0.07 0.81 7.98 -51.93 -0.41 0.39 16 24 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.08 0.58 7.93 -51.93 -0.41 0.17 16 28 H 0.15 1.40 8.00 -52.49 -0.42 0.98 16 29 H 0.41 3.35 9.06 45.56 0.41 3.76 16 30 H 0.10 2.53 8.11 -51.92 -0.42 2.11 16 31 H 0.06 1.41 8.06 -51.91 -0.42 0.99 16 32 H 0.26 6.96 8.32 -40.82 -0.34 6.62 16 33 H 0.08 1.72 8.14 -51.93 -0.42 1.30 16 34 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 35 H 0.06 1.43 8.14 -51.93 -0.42 1.00 16 36 H 0.09 2.08 8.14 -51.93 -0.42 1.66 16 LS Contribution 327.77 15.07 4.94 4.94 Total: -1.00 -30.56 327.77 -8.86 -39.42 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -4.18 Total: 3.37 kcal Atomic # 6 Polarization: -9.49 SS G_CDS: -2.49 Total: -11.98 kcal Atomic # 7 Polarization: -43.87 SS G_CDS: 0.50 Total: -43.37 kcal Atomic # 8 Polarization: -6.37 SS G_CDS: -0.25 Total: -6.62 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 16 Polarization: 0.73 SS G_CDS: -2.36 Total: -1.63 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.56 -8.86 -39.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594894140.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.189 kcal (2) G-P(sol) polarization free energy of solvation -30.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds