Wall clock time and date at job start Tue Mar 31 2020 01:37:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50701 * 109.47497 * 2 1 4 4 C 1.38251 * 120.36007 * 125.02043 * 3 2 1 5 5 C 1.39413 * 118.51727 * 179.97438 * 4 3 2 6 6 O 1.35513 * 120.46602 * 180.02562 * 5 4 3 7 7 N 1.32741 * 119.07401 * 359.74188 * 5 4 3 8 8 C 1.32520 * 120.63846 * 0.53246 * 7 5 4 9 9 S 1.76207 * 119.19642 * 179.72309 * 8 7 5 10 10 C 1.81000 * 99.99637 * 359.73460 * 9 8 7 11 11 C 1.52999 * 109.47133 * 179.97438 * 10 9 8 12 12 C 1.50701 * 115.55129 * 294.86945 * 11 10 9 13 13 H 1.08003 * 119.99418 * 95.17062 * 12 11 10 14 14 C 1.37872 * 120.00156 * 275.44880 * 12 11 10 15 15 N 1.31519 * 119.99817 * 5.74497 * 14 12 11 16 16 Si 1.86793 * 119.99973 * 185.74971 * 14 12 11 17 17 H 1.48501 * 109.47393 * 90.00085 * 16 14 12 18 18 H 1.48500 * 109.46988 * 209.99610 * 16 14 12 19 19 H 1.48499 * 109.47227 * 329.99853 * 16 14 12 20 20 C 1.53005 * 117.49771 * 80.53657 * 11 10 9 21 21 C 1.53002 * 117.50137 * 149.19696 * 11 10 9 22 22 N 1.32414 * 120.36242 * 305.00321 * 3 2 1 23 23 H 1.09001 * 109.47131 * 59.99576 * 1 2 3 24 24 H 1.09000 * 109.47430 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46691 * 300.00089 * 1 2 3 26 26 H 1.09003 * 109.46691 * 239.99911 * 2 1 3 27 27 H 1.09001 * 109.47131 * 120.00423 * 2 1 3 28 28 H 1.08002 * 120.74439 * 359.96246 * 4 3 2 29 29 H 0.96704 * 113.99797 * 89.99752 * 6 5 4 30 30 H 1.08999 * 109.47760 * 60.00054 * 10 9 8 31 31 H 1.09007 * 109.47181 * 299.99837 * 10 9 8 32 32 H 0.96999 * 119.99725 * 174.98549 * 15 14 12 33 33 H 1.09002 * 117.50085 * 215.00267 * 20 11 10 34 34 H 1.09000 * 117.50084 * 0.02955 * 20 11 10 35 35 H 1.09004 * 117.49591 * 359.97438 * 21 11 10 36 36 H 1.08993 * 117.49901 * 144.97508 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.9108 1.8513 0.9769 5 6 3.3515 3.1735 0.9399 6 8 4.2131 3.6370 1.8776 7 7 2.9199 3.9704 -0.0300 8 6 2.0735 3.5221 -0.9459 9 16 1.5194 4.6149 -2.2122 10 6 2.4051 6.1204 -1.7378 11 6 2.0701 7.2413 -2.7238 12 6 2.5393 7.0237 -4.1393 13 1 1.8678 6.6005 -4.8716 14 6 3.8275 7.3595 -4.4978 15 7 4.6809 7.7632 -3.5822 16 14 4.3607 7.2414 -6.2842 17 1 4.0988 8.5346 -6.9656 18 1 5.8119 6.9332 -6.3482 19 1 3.5953 6.1624 -6.9589 20 6 0.7485 7.9861 -2.5243 21 6 2.0739 8.6756 -2.1909 22 7 1.6377 2.2703 -0.9359 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 3.2479 1.1786 1.7517 29 1 5.1450 3.5300 1.6426 30 1 3.4784 5.9312 -1.7545 31 1 2.1041 6.4177 -0.7332 32 1 5.6061 7.9297 -3.8213 33 1 0.2185 8.3187 -3.4168 34 1 0.1180 7.6779 -1.6903 35 1 2.3148 8.8205 -1.1378 36 1 2.4163 9.4616 -2.8640 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594894140.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:46 Heat of formation + Delta-G solvation = -1.800119 kcal Electronic energy + Delta-G solvation = -19097.754281 eV Core-core repulsion = 16094.240267 eV Total energy + Delta-G solvation = -3003.514014 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.09007 -38.71837 -38.46733 -35.94632 -34.01603 -33.02536 -31.72233 -29.50379 -27.43699 -25.88601 -25.70850 -22.96961 -22.87796 -21.28184 -19.95815 -18.83575 -18.40299 -17.71865 -16.79740 -16.63932 -16.44634 -15.89993 -15.61121 -15.37701 -15.15716 -14.72693 -14.59807 -13.90710 -13.50198 -13.31511 -13.11805 -13.00545 -12.81895 -12.47649 -12.37455 -12.23389 -12.09067 -11.90273 -11.54686 -11.40761 -11.28111 -10.96778 -10.78976 -10.48871 -10.38821 -9.92625 -8.68385 -8.10961 -6.23603 -0.33861 -0.05230 0.33961 1.35356 1.41591 1.43433 1.52885 2.34075 2.42904 2.59256 3.13598 3.16732 3.48455 3.54048 3.99419 4.13616 4.16068 4.23017 4.37495 4.38332 4.49414 4.60265 4.66515 4.76328 4.95585 4.98719 5.02700 5.11634 5.21729 5.22476 5.43009 5.53682 5.60323 5.76748 5.88288 6.34482 6.45668 6.81409 6.83300 7.45294 8.96680 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.019631 B = 0.004763 C = 0.004638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.978014 B = 5877.238744 C = 6035.756270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.068 4.068 3 C 0.191 3.809 4 C -0.245 4.245 5 C 0.359 3.641 6 O -0.481 6.481 7 N -0.580 5.580 8 C 0.305 3.695 9 S 0.012 5.988 10 C -0.026 4.026 11 C 0.019 3.981 12 C -0.504 4.504 13 H 0.055 0.945 14 C 0.031 3.969 15 N -0.905 5.905 16 Si 0.946 3.054 17 H -0.275 1.275 18 H -0.285 1.285 19 H -0.269 1.269 20 C -0.182 4.182 21 C -0.146 4.146 22 N -0.527 5.527 23 H 0.044 0.956 24 H 0.087 0.913 25 H 0.048 0.952 26 H 0.098 0.902 27 H 0.120 0.880 28 H 0.191 0.809 29 H 0.427 0.573 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.260 0.740 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.073 0.927 36 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.085 -14.933 9.916 18.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.106 4.106 3 C 0.043 3.957 4 C -0.272 4.272 5 C 0.170 3.830 6 O -0.292 6.292 7 N -0.311 5.311 8 C -0.069 4.069 9 S 0.252 5.748 10 C -0.176 4.176 11 C 0.017 3.983 12 C -0.542 4.542 13 H 0.074 0.926 14 C -0.170 4.170 15 N -0.542 5.542 16 Si 0.772 3.228 17 H -0.200 1.200 18 H -0.211 1.211 19 H -0.193 1.193 20 C -0.220 4.220 21 C -0.186 4.186 22 N -0.247 5.247 23 H 0.063 0.937 24 H 0.106 0.894 25 H 0.067 0.933 26 H 0.116 0.884 27 H 0.138 0.862 28 H 0.208 0.792 29 H 0.289 0.711 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.069 0.931 33 H 0.104 0.896 34 H 0.108 0.892 35 H 0.092 0.908 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.423 -14.192 8.592 17.170 hybrid contribution 2.367 0.183 0.635 2.458 sum -2.055 -14.009 9.226 16.900 Atomic orbital electron populations 1.21666 0.93613 1.03172 1.01639 1.20739 0.97288 0.86740 1.05785 1.22458 0.88716 0.97414 0.87115 1.22966 1.04291 0.95870 1.04093 1.19816 0.90220 0.88045 0.84932 1.84649 1.21325 1.84816 1.38420 1.68368 1.16289 1.40763 1.05648 1.25157 0.91996 0.93857 0.95921 1.85878 1.56131 1.04289 1.28538 1.22948 1.01277 0.93760 0.99590 1.18659 0.96943 0.88795 0.93897 1.20588 0.97825 1.42271 0.93529 0.92634 1.25622 0.96793 0.94035 1.00556 1.70091 1.03691 1.45938 1.34494 0.85745 0.77264 0.78600 0.81214 1.20023 1.21107 1.19329 1.23070 0.90599 1.06218 1.02090 1.22486 1.00365 0.96880 0.98873 1.68377 1.26769 1.02135 1.27382 0.93652 0.89391 0.93275 0.88400 0.86182 0.79165 0.71066 0.91746 0.91901 0.93076 0.89598 0.89220 0.90813 0.91432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 9.78 71.98 0.70 -1.64 16 2 C -0.07 -1.06 6.36 29.85 0.19 -0.87 16 3 C 0.19 4.86 6.20 42.47 0.26 5.12 16 4 C -0.24 -5.63 9.75 22.56 0.22 -5.41 16 5 C 0.36 10.81 7.83 84.84 0.66 11.48 16 6 O -0.48 -11.92 13.57 -88.15 -1.20 -13.12 16 7 N -0.58 -22.53 9.16 -309.33 -2.83 -25.37 16 8 C 0.31 12.10 7.85 180.44 1.42 13.52 16 9 S 0.01 0.53 21.93 -56.49 -1.24 -0.71 16 10 C -0.03 -1.25 4.66 71.98 0.34 -0.91 16 11 C 0.02 0.95 1.33 -52.93 -0.07 0.88 16 12 C -0.50 -27.32 8.48 25.60 0.22 -27.10 16 13 H 0.06 3.03 7.82 -2.91 -0.02 3.01 16 14 C 0.03 1.68 5.39 84.65 0.46 2.14 16 15 N -0.90 -51.46 12.93 21.45 0.28 -51.18 16 16 Si 0.95 43.43 29.54 68.60 2.03 45.46 16 17 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 18 H -0.29 -12.92 7.11 99.48 0.71 -12.22 16 19 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 20 C -0.18 -7.81 9.96 30.62 0.30 -7.51 16 21 C -0.15 -6.85 9.45 30.62 0.29 -6.56 16 22 N -0.53 -18.08 9.99 -184.71 -1.85 -19.93 16 23 H 0.04 0.97 7.98 -2.39 -0.02 0.96 16 24 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 25 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.12 1.01 7.93 -2.39 -0.02 0.99 16 28 H 0.19 2.58 8.00 -2.91 -0.02 2.56 16 29 H 0.43 6.24 9.06 -74.05 -0.67 5.57 16 30 H 0.06 3.44 8.11 -2.40 -0.02 3.42 16 31 H 0.06 2.88 8.06 -2.39 -0.02 2.86 16 32 H 0.26 14.19 8.32 -92.71 -0.77 13.42 16 33 H 0.09 3.58 8.14 -2.39 -0.02 3.56 16 34 H 0.09 3.44 8.14 -2.39 -0.02 3.42 16 35 H 0.07 3.27 8.14 -2.39 -0.02 3.25 16 36 H 0.07 3.37 8.14 -2.39 -0.02 3.35 16 Total: -1.00 -67.97 327.77 0.60 -67.37 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: 0.42 Total: 14.33 kcal Atomic # 6 Polarization: -21.85 SS G_CDS: 4.99 Total: -16.86 kcal Atomic # 7 Polarization: -92.07 SS G_CDS: -4.40 Total: -96.47 kcal Atomic # 8 Polarization: -11.92 SS G_CDS: -1.20 Total: -13.12 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Atomic # 16 Polarization: 0.53 SS G_CDS: -1.24 Total: -0.71 kcal Total: -67.97 0.60 -67.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594894140.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.572 kcal (2) G-P(sol) polarization free energy of solvation -67.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds