Wall clock time and date at job start Tue Mar 31 2020 01:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35004 * 127.27517 * 2 1 4 4 C 1.39484 * 111.68375 * 180.20563 * 3 2 1 5 5 C 1.47692 * 122.10235 * 179.77958 * 4 3 2 6 6 O 1.21574 * 120.00043 * 351.59242 * 5 4 3 7 7 N 1.34779 * 119.99862 * 171.58797 * 5 4 3 8 8 C 1.46931 * 120.63074 * 351.32170 * 7 5 4 9 9 C 1.53191 * 108.77240 * 233.60548 * 8 7 5 10 10 C 1.53032 * 109.31633 * 305.36665 * 9 8 7 11 11 C 1.53044 * 109.54240 * 61.36340 * 10 9 8 12 12 H 1.09004 * 109.49479 * 58.61908 * 11 10 9 13 13 C 1.50693 * 109.50244 * 178.68437 * 11 10 9 14 14 H 1.08004 * 119.99539 * 359.93785 * 13 11 10 15 15 C 1.37870 * 120.00301 * 179.66177 * 13 11 10 16 16 N 1.31520 * 119.99784 * 0.27615 * 15 13 11 17 17 Si 1.86801 * 120.00285 * 180.27584 * 15 13 11 18 18 H 1.48498 * 109.46796 * 0.02562 * 17 15 13 19 19 H 1.48499 * 109.46911 * 119.99946 * 17 15 13 20 20 H 1.48501 * 109.47337 * 240.00065 * 17 15 13 21 21 C 1.46927 * 120.60304 * 171.33991 * 7 5 4 22 22 N 1.30601 * 115.79350 * 359.51663 * 4 3 2 23 23 S 1.56148 * 109.79714 * 0.26462 * 22 4 3 24 24 H 1.08999 * 109.47041 * 180.29853 * 1 2 3 25 25 H 1.09004 * 109.47108 * 300.30170 * 1 2 3 26 26 H 1.09002 * 109.47196 * 60.29409 * 1 2 3 27 27 H 1.08001 * 124.15702 * 359.97438 * 3 2 1 28 28 H 1.09001 * 109.58451 * 113.81921 * 8 7 5 29 29 H 1.09000 * 109.58354 * 353.39268 * 8 7 5 30 30 H 1.09000 * 109.49298 * 185.40798 * 9 8 7 31 31 H 1.09007 * 109.49486 * 65.32002 * 9 8 7 32 32 H 1.09001 * 109.45963 * 301.34334 * 10 9 8 33 33 H 1.09002 * 109.46150 * 181.38590 * 10 9 8 34 34 H 0.97002 * 119.99446 * 179.97438 * 16 15 13 35 35 H 1.09004 * 109.62024 * 6.62598 * 21 7 5 36 36 H 1.09000 * 109.56278 * 246.19119 * 21 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3247 1.0743 0.0000 4 6 3.6682 0.6994 -0.0047 5 6 4.7604 1.6935 -0.0104 6 8 4.5083 2.8727 -0.1652 7 7 6.0366 1.2934 0.1560 8 6 6.3434 -0.0935 0.5319 9 6 7.2319 -0.0810 1.7797 10 6 8.4649 0.7857 1.5146 11 6 8.0271 2.2221 1.2191 12 1 7.4608 2.6111 2.0654 13 6 9.2433 3.0818 0.9900 14 1 10.2305 2.6477 1.0501 15 6 9.0958 4.4211 0.6980 16 7 7.8937 4.9497 0.6248 17 14 10.6033 5.4851 0.4064 18 1 11.8280 4.6567 0.5446 19 1 10.5465 6.0594 -0.9619 20 1 10.6336 6.5847 1.4039 21 6 7.1471 2.2364 -0.0348 22 7 3.8995 -0.5860 0.0018 23 16 2.5473 -1.3667 0.0066 24 1 -0.3633 -1.0276 0.0054 25 1 -0.3633 0.5185 0.8873 26 1 -0.3634 0.5093 -0.8926 27 1 1.9808 2.0981 -0.0004 28 1 6.8692 -0.5860 -0.2861 29 1 5.4177 -0.6268 0.7478 30 1 7.5457 -1.0985 2.0131 31 1 6.6726 0.3295 2.6205 32 1 9.0104 0.3890 0.6583 33 1 9.1110 0.7764 2.3924 34 1 7.7900 5.8921 0.4198 35 1 6.7520 3.2400 -0.1925 36 1 7.7382 1.9341 -0.8993 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597904552.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:17:39 Heat of formation + Delta-G solvation = 10.357773 kcal Electronic energy + Delta-G solvation = -19884.540360 eV Core-core repulsion = 16881.553552 eV Total energy + Delta-G solvation = -3002.986808 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.34196 -38.23162 -36.55588 -33.76200 -32.95373 -31.65618 -29.71602 -28.28441 -26.23800 -24.93534 -23.54874 -21.74699 -20.64856 -19.67795 -18.49945 -18.25243 -16.61516 -15.94969 -15.45646 -15.15195 -14.46436 -14.26806 -14.04694 -13.71643 -13.33811 -13.06179 -12.99172 -12.80488 -12.72701 -12.54599 -12.10005 -11.80270 -11.33223 -11.07003 -10.96428 -10.60916 -10.42428 -10.23585 -9.99351 -9.78948 -9.47330 -9.30937 -9.07087 -8.78002 -8.73641 -8.40724 -7.68679 -5.96823 -4.05773 0.59160 1.39714 1.85816 1.94689 3.31689 3.40060 3.43417 3.65530 3.76177 4.44948 4.55834 4.87943 5.11647 5.17909 5.27177 5.32910 5.57278 5.65533 5.67990 5.75045 5.84125 5.92162 6.23981 6.35938 6.38700 6.48298 6.68979 6.74332 6.91964 7.02801 7.18757 7.32733 7.66484 7.90119 8.02175 8.26363 8.41242 8.79443 8.98767 9.59729 11.08372 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.032235 B = 0.004596 C = 0.004118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.404274 B = 6090.831419 C = 6798.250260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.243 4.243 3 C -0.142 4.142 4 C 0.071 3.929 5 C 0.573 3.427 6 O -0.525 6.525 7 N -0.584 5.584 8 C 0.089 3.911 9 C -0.133 4.133 10 C -0.111 4.111 11 C 0.040 3.960 12 H 0.029 0.971 13 C -0.520 4.520 14 H 0.059 0.941 15 C 0.062 3.938 16 N -0.880 5.880 17 Si 0.892 3.108 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 C 0.111 3.889 22 N -0.507 5.507 23 S 0.410 5.590 24 H 0.071 0.929 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.170 0.830 28 H 0.057 0.943 29 H 0.120 0.880 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.049 0.951 33 H 0.050 0.950 34 H 0.263 0.737 35 H 0.124 0.876 36 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.627 -13.789 -0.949 19.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.374 4.374 3 C -0.174 4.174 4 C -0.104 4.104 5 C 0.354 3.646 6 O -0.400 6.400 7 N -0.315 5.315 8 C -0.036 4.036 9 C -0.172 4.172 10 C -0.149 4.149 11 C 0.021 3.979 12 H 0.047 0.953 13 C -0.558 4.558 14 H 0.077 0.923 15 C -0.141 4.141 16 N -0.518 5.518 17 Si 0.720 3.280 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.210 1.210 21 C -0.009 4.009 22 N -0.340 5.340 23 S 0.568 5.432 24 H 0.090 0.910 25 H 0.098 0.902 26 H 0.098 0.902 27 H 0.188 0.812 28 H 0.076 0.924 29 H 0.137 0.863 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.141 0.859 36 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -13.108 -14.985 -1.080 19.939 hybrid contribution 0.565 2.486 -0.180 2.556 sum -12.544 -12.499 -1.260 17.753 Atomic orbital electron populations 1.20191 0.86350 1.03067 1.03472 1.25996 1.02993 0.99965 1.08409 1.21277 0.90372 1.01933 1.03841 1.21494 0.95537 0.89325 1.04005 1.17364 0.81895 0.86484 0.78835 1.90822 1.82549 1.16138 1.50536 1.48359 1.05753 1.12256 1.65172 1.22488 1.01506 0.83016 0.96619 1.21970 0.98087 0.99543 0.97580 1.21639 0.95397 0.97597 1.00230 1.18970 0.94825 0.90320 0.93814 0.95256 1.21124 0.92300 0.93469 1.48928 0.92286 1.25064 0.95846 0.98064 0.95105 1.69909 1.20867 1.13061 1.47951 0.86535 0.83187 0.80465 0.77819 1.19792 1.20985 1.21006 1.22383 0.85287 0.94213 0.98972 1.72880 1.25409 1.11005 1.24718 1.80558 0.89453 1.14018 1.59180 0.91024 0.90225 0.90230 0.81245 0.92427 0.86336 0.92326 0.92500 0.93226 0.93110 0.92715 0.85852 0.93699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.50 10.46 36.01 0.38 -0.13 16 2 C -0.24 -2.64 6.58 -35.46 -0.23 -2.87 16 3 C -0.14 -2.03 9.93 -40.27 -0.40 -2.43 16 4 C 0.07 1.22 6.46 -84.06 -0.54 0.68 16 5 C 0.57 12.46 7.65 -12.40 -0.09 12.36 16 6 O -0.52 -13.20 16.12 5.30 0.09 -13.11 16 7 N -0.58 -12.77 2.97 -173.93 -0.52 -13.28 16 8 C 0.09 1.62 5.94 -3.71 -0.02 1.60 16 9 C -0.13 -2.39 6.08 -26.62 -0.16 -2.55 16 10 C -0.11 -2.33 5.11 -26.69 -0.14 -2.47 16 11 C 0.04 1.02 2.25 -91.65 -0.21 0.81 16 12 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16 13 C -0.52 -14.37 8.57 -34.45 -0.30 -14.67 16 14 H 0.06 1.60 7.74 -52.48 -0.41 1.19 16 15 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 16 N -0.88 -26.04 11.39 55.43 0.63 -25.41 16 17 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 18 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 19 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 21 C 0.11 2.81 5.41 -3.71 -0.02 2.79 16 22 N -0.51 -7.63 7.38 24.84 0.18 -7.45 16 23 S 0.41 4.39 23.20 -107.50 -2.49 1.90 16 24 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.17 2.39 8.00 -52.49 -0.42 1.97 16 28 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.12 2.00 4.16 -72.43 -0.30 1.70 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 32 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 33 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 35 H 0.12 3.57 5.11 -51.93 -0.27 3.31 16 36 H 0.04 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 306.41 15.07 4.62 4.62 Total: -1.00 -31.91 306.41 -9.10 -41.01 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: -4.76 Total: 0.47 kcal Atomic # 6 Polarization: -3.40 SS G_CDS: -1.83 Total: -5.23 kcal Atomic # 7 Polarization: -46.43 SS G_CDS: 0.30 Total: -46.14 kcal Atomic # 8 Polarization: -13.20 SS G_CDS: 0.09 Total: -13.11 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: 4.39 SS G_CDS: -2.49 Total: 1.90 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -31.91 -9.10 -41.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597904552.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.369 kcal (2) G-P(sol) polarization free energy of solvation -31.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds