Wall clock time and date at job start Tue Mar 31 2020 01:17:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35004 * 127.27517 * 2 1 4 4 C 1.39484 * 111.68375 * 180.20563 * 3 2 1 5 5 C 1.47692 * 122.10235 * 179.77958 * 4 3 2 6 6 O 1.21574 * 120.00043 * 351.59242 * 5 4 3 7 7 N 1.34779 * 119.99862 * 171.58797 * 5 4 3 8 8 C 1.46931 * 120.63074 * 351.32170 * 7 5 4 9 9 C 1.53191 * 108.77240 * 233.60548 * 8 7 5 10 10 C 1.53032 * 109.31633 * 305.36665 * 9 8 7 11 11 C 1.53044 * 109.54240 * 61.36340 * 10 9 8 12 12 H 1.09004 * 109.49479 * 58.61908 * 11 10 9 13 13 C 1.50693 * 109.50244 * 178.68437 * 11 10 9 14 14 H 1.08004 * 119.99539 * 359.93785 * 13 11 10 15 15 C 1.37870 * 120.00301 * 179.66177 * 13 11 10 16 16 N 1.31520 * 119.99784 * 0.27615 * 15 13 11 17 17 Si 1.86801 * 120.00285 * 180.27584 * 15 13 11 18 18 H 1.48498 * 109.46796 * 0.02562 * 17 15 13 19 19 H 1.48499 * 109.46911 * 119.99946 * 17 15 13 20 20 H 1.48501 * 109.47337 * 240.00065 * 17 15 13 21 21 C 1.46927 * 120.60304 * 171.33991 * 7 5 4 22 22 N 1.30601 * 115.79350 * 359.51663 * 4 3 2 23 23 S 1.56148 * 109.79714 * 0.26462 * 22 4 3 24 24 H 1.08999 * 109.47041 * 180.29853 * 1 2 3 25 25 H 1.09004 * 109.47108 * 300.30170 * 1 2 3 26 26 H 1.09002 * 109.47196 * 60.29409 * 1 2 3 27 27 H 1.08001 * 124.15702 * 359.97438 * 3 2 1 28 28 H 1.09001 * 109.58451 * 113.81921 * 8 7 5 29 29 H 1.09000 * 109.58354 * 353.39268 * 8 7 5 30 30 H 1.09000 * 109.49298 * 185.40798 * 9 8 7 31 31 H 1.09007 * 109.49486 * 65.32002 * 9 8 7 32 32 H 1.09001 * 109.45963 * 301.34334 * 10 9 8 33 33 H 1.09002 * 109.46150 * 181.38590 * 10 9 8 34 34 H 0.97002 * 119.99446 * 179.97438 * 16 15 13 35 35 H 1.09004 * 109.62024 * 6.62598 * 21 7 5 36 36 H 1.09000 * 109.56278 * 246.19119 * 21 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3247 1.0743 0.0000 4 6 3.6682 0.6994 -0.0047 5 6 4.7604 1.6935 -0.0104 6 8 4.5083 2.8727 -0.1652 7 7 6.0366 1.2934 0.1560 8 6 6.3434 -0.0935 0.5319 9 6 7.2319 -0.0810 1.7797 10 6 8.4649 0.7857 1.5146 11 6 8.0271 2.2221 1.2191 12 1 7.4608 2.6111 2.0654 13 6 9.2433 3.0818 0.9900 14 1 10.2305 2.6477 1.0501 15 6 9.0958 4.4211 0.6980 16 7 7.8937 4.9497 0.6248 17 14 10.6033 5.4851 0.4064 18 1 11.8280 4.6567 0.5446 19 1 10.5465 6.0594 -0.9619 20 1 10.6336 6.5847 1.4039 21 6 7.1471 2.2364 -0.0348 22 7 3.8995 -0.5860 0.0018 23 16 2.5473 -1.3667 0.0066 24 1 -0.3633 -1.0276 0.0054 25 1 -0.3633 0.5185 0.8873 26 1 -0.3634 0.5093 -0.8926 27 1 1.9808 2.0981 -0.0004 28 1 6.8692 -0.5860 -0.2861 29 1 5.4177 -0.6268 0.7478 30 1 7.5457 -1.0985 2.0131 31 1 6.6726 0.3295 2.6205 32 1 9.0104 0.3890 0.6583 33 1 9.1110 0.7764 2.3924 34 1 7.7900 5.8921 0.4198 35 1 6.7520 3.2400 -0.1925 36 1 7.7382 1.9341 -0.8993 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597904552.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:17:38 Heat of formation + Delta-G solvation = -10.048322 kcal Electronic energy + Delta-G solvation = -19885.425235 eV Core-core repulsion = 16881.553552 eV Total energy + Delta-G solvation = -3003.871683 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.73929 -39.68109 -38.30123 -35.42156 -34.28061 -33.36060 -31.57768 -29.23361 -27.80844 -26.80054 -25.04040 -23.48756 -21.89887 -21.17349 -20.03706 -19.45149 -18.51745 -17.58218 -16.96867 -16.76271 -16.35659 -15.65845 -15.33535 -15.15303 -14.76327 -14.59564 -14.33179 -13.99924 -13.92284 -13.77197 -13.71373 -13.35537 -12.92439 -12.83141 -12.38494 -12.30794 -12.12408 -11.98930 -11.72537 -11.40741 -11.20177 -10.99974 -10.59531 -10.54797 -10.28617 -9.81184 -9.41285 -8.12192 -6.30367 -0.49896 0.46682 0.70699 0.78362 1.39425 1.40458 1.53237 2.09745 2.20560 2.41440 3.15282 3.48926 3.72504 4.14159 4.16366 4.18871 4.29440 4.34657 4.57238 4.70077 4.73435 4.78909 4.80914 4.91625 4.98512 5.05440 5.17619 5.21089 5.24139 5.27159 5.37319 5.52810 5.61967 5.84495 5.94619 6.29512 6.55493 6.82071 7.12742 7.40025 8.91744 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.032235 B = 0.004596 C = 0.004118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.404274 B = 6090.831419 C = 6798.250260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.226 4.226 3 C -0.168 4.168 4 C 0.043 3.957 5 C 0.563 3.437 6 O -0.578 6.578 7 N -0.592 5.592 8 C 0.087 3.913 9 C -0.126 4.126 10 C -0.104 4.104 11 C 0.038 3.962 12 H -0.015 1.015 13 C -0.536 4.536 14 H 0.064 0.936 15 C 0.009 3.991 16 N -0.916 5.916 17 Si 0.962 3.038 18 H -0.260 1.260 19 H -0.281 1.281 20 H -0.281 1.281 21 C 0.124 3.876 22 N -0.539 5.539 23 S 0.523 5.477 24 H 0.100 0.900 25 H 0.090 0.910 26 H 0.090 0.910 27 H 0.159 0.841 28 H 0.069 0.931 29 H 0.141 0.859 30 H 0.102 0.898 31 H 0.045 0.955 32 H 0.057 0.943 33 H 0.054 0.946 34 H 0.260 0.740 35 H 0.081 0.919 36 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.715 -17.135 -0.941 22.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.357 4.357 3 C -0.200 4.200 4 C -0.128 4.128 5 C 0.347 3.653 6 O -0.458 6.458 7 N -0.323 5.323 8 C -0.037 4.037 9 C -0.164 4.164 10 C -0.142 4.142 11 C 0.019 3.981 12 H 0.004 0.996 13 C -0.574 4.574 14 H 0.082 0.918 15 C -0.191 4.191 16 N -0.555 5.555 17 Si 0.787 3.213 18 H -0.184 1.184 19 H -0.207 1.207 20 H -0.207 1.207 21 C 0.002 3.998 22 N -0.376 5.376 23 S 0.681 5.319 24 H 0.119 0.881 25 H 0.108 0.892 26 H 0.108 0.892 27 H 0.177 0.823 28 H 0.087 0.913 29 H 0.157 0.843 30 H 0.121 0.879 31 H 0.064 0.936 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.099 0.901 36 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -14.188 -18.365 -1.060 23.231 hybrid contribution 0.731 3.351 -0.185 3.435 sum -13.457 -15.013 -1.245 20.200 Atomic orbital electron populations 1.20440 0.83169 1.05331 1.04473 1.26496 1.04977 0.98992 1.05279 1.21207 0.89923 1.02761 1.06093 1.20804 0.94631 0.89120 1.08246 1.18076 0.82812 0.86964 0.77400 1.90767 1.83560 1.18763 1.52722 1.48391 1.05252 1.13210 1.65399 1.22784 1.02952 0.80987 0.96974 1.21944 0.96323 1.01083 0.97060 1.21528 0.97019 0.95022 1.00650 1.18904 0.93835 0.93128 0.92209 0.99648 1.21530 0.93144 0.94210 1.48553 0.91812 1.25942 0.98710 0.99598 0.94812 1.70113 1.23268 1.13107 1.49023 0.85447 0.79755 0.78549 0.77564 1.18374 1.20736 1.20718 1.21831 0.86205 0.93252 0.98550 1.72217 1.29824 1.10248 1.25283 1.80105 0.86132 1.10901 1.54802 0.88098 0.89167 0.89165 0.82308 0.91297 0.84254 0.87942 0.93649 0.92421 0.92697 0.93039 0.90116 0.94225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.74 10.46 71.24 0.75 0.01 16 2 C -0.23 -4.23 6.58 24.94 0.16 -4.06 16 3 C -0.17 -4.78 9.93 21.83 0.22 -4.57 16 4 C 0.04 1.50 6.46 42.13 0.27 1.77 16 5 C 0.56 25.96 7.65 86.74 0.66 26.63 16 6 O -0.58 -31.66 16.12 -3.95 -0.06 -31.72 16 7 N -0.59 -27.03 2.97 -822.45 -2.44 -29.47 16 8 C 0.09 3.08 5.94 86.36 0.51 3.60 16 9 C -0.13 -4.35 6.08 30.67 0.19 -4.16 16 10 C -0.10 -4.38 5.11 30.62 0.16 -4.22 16 11 C 0.04 2.06 2.25 -11.46 -0.03 2.04 16 12 H -0.01 -0.90 8.14 -2.38 -0.02 -0.92 16 13 C -0.54 -30.62 8.57 25.60 0.22 -30.40 16 14 H 0.06 3.49 7.74 -2.91 -0.02 3.47 16 15 C 0.01 0.50 5.30 84.65 0.45 0.95 16 16 N -0.92 -57.35 11.39 21.45 0.24 -57.10 16 17 Si 0.96 45.29 29.54 68.60 2.03 47.31 16 18 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 19 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 20 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 21 C 0.12 6.63 5.41 86.36 0.47 7.10 16 22 N -0.54 -15.19 7.38 -75.32 -0.56 -15.74 16 23 S 0.52 9.07 23.20 -56.49 -1.31 7.76 16 24 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 25 H 0.09 0.79 8.14 -2.38 -0.02 0.77 16 26 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.16 4.73 8.00 -2.91 -0.02 4.71 16 28 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 29 H 0.14 4.46 4.16 -42.87 -0.18 4.28 16 30 H 0.10 2.69 8.14 -2.39 -0.02 2.67 16 31 H 0.04 1.67 8.14 -2.38 -0.02 1.65 16 32 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 33 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 34 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 35 H 0.08 5.06 5.11 -2.38 -0.01 5.05 16 36 H 0.04 2.09 8.14 -2.39 -0.02 2.07 16 Total: -1.00 -76.17 306.41 2.84 -73.32 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: 0.92 Total: 10.99 kcal Atomic # 6 Polarization: -9.36 SS G_CDS: 4.03 Total: -5.33 kcal Atomic # 7 Polarization: -99.56 SS G_CDS: -2.76 Total: -102.32 kcal Atomic # 8 Polarization: -31.66 SS G_CDS: -0.06 Total: -31.72 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.31 kcal Atomic # 16 Polarization: 9.07 SS G_CDS: -1.31 Total: 7.76 kcal Total: -76.17 2.84 -73.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597904552.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.276 kcal (2) G-P(sol) polarization free energy of solvation -76.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds