Wall clock time and date at job start Tue Mar 31 2020 01:17:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35000 * 127.27777 * 2 1 4 4 C 1.39481 * 111.68756 * 179.97438 * 3 2 1 5 5 C 1.47694 * 122.10651 * 180.02562 * 4 3 2 6 6 O 1.21579 * 119.99808 * 351.60791 * 5 4 3 7 7 N 1.34771 * 120.00552 * 171.61026 * 5 4 3 8 8 C 1.46933 * 120.62812 * 353.07946 * 7 5 4 9 9 C 1.53190 * 108.89292 * 126.34364 * 8 7 5 10 10 C 1.53351 * 109.15251 * 54.57710 * 9 8 7 11 11 C 1.53041 * 109.60643 * 298.71638 * 10 9 8 12 12 H 1.09004 * 109.49253 * 301.41562 * 11 10 9 13 13 C 1.50700 * 109.49766 * 181.32394 * 11 10 9 14 14 H 1.08000 * 119.99828 * 0.15795 * 13 11 10 15 15 C 1.37867 * 120.00063 * 180.15812 * 13 11 10 16 16 N 1.31517 * 120.00252 * 0.02562 * 15 13 11 17 17 Si 1.86801 * 120.00169 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47069 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47414 * 120.00263 * 17 15 13 20 20 H 1.48499 * 109.47099 * 240.00016 * 17 15 13 21 21 C 1.46919 * 120.63742 * 173.10176 * 7 5 4 22 22 N 1.30604 * 115.79306 * 0.26842 * 4 3 2 23 23 S 1.56140 * 109.79788 * 359.57894 * 22 4 3 24 24 H 1.08996 * 109.46999 * 90.00232 * 1 2 3 25 25 H 1.08996 * 109.46697 * 209.99901 * 1 2 3 26 26 H 1.08996 * 109.46999 * 329.99906 * 1 2 3 27 27 H 1.08002 * 124.15549 * 359.94551 * 3 2 1 28 28 H 1.08999 * 109.58789 * 246.19796 * 8 7 5 29 29 H 1.09004 * 109.58828 * 6.48350 * 8 7 5 30 30 H 1.09000 * 109.49782 * 174.66126 * 9 8 7 31 31 H 1.09006 * 109.49791 * 294.75197 * 9 8 7 32 32 H 1.08999 * 109.41845 * 178.67548 * 10 9 8 33 33 H 1.09000 * 109.42112 * 58.75041 * 10 9 8 34 34 H 0.96998 * 120.00262 * 180.02562 * 16 15 13 35 35 H 1.09004 * 109.58766 * 353.37577 * 21 7 5 36 36 H 1.08996 * 109.59207 * 113.79794 * 21 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3247 1.0742 0.0000 4 6 3.6681 0.6993 0.0006 5 6 4.7605 1.6934 0.0013 6 8 4.5090 2.8730 -0.1523 7 7 6.0360 1.2931 0.1721 8 6 6.3434 -0.1037 0.5089 9 6 7.3566 -0.6467 -0.5037 10 6 8.5791 0.2785 -0.5377 11 6 8.1510 1.6791 -0.9820 12 1 7.6868 1.6223 -1.9666 13 6 9.3591 2.5777 -1.0459 14 1 10.3353 2.1884 -0.7973 15 6 9.2181 3.8966 -1.4217 16 7 8.0292 4.3708 -1.7240 17 14 10.7154 5.0107 -1.5002 18 1 11.9255 4.2416 -1.1137 19 1 10.8769 5.5263 -2.8835 20 1 10.5342 6.1501 -0.5653 21 6 7.1455 2.2450 0.0256 22 7 3.8995 -0.5860 -0.0045 23 16 2.5473 -1.3668 0.0008 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3632 -0.8900 0.5138 26 1 -0.3633 0.8899 0.5138 27 1 1.9808 2.0980 -0.0008 28 1 6.7671 -0.1530 1.5119 29 1 5.4311 -0.6988 0.4680 30 1 7.6636 -1.6501 -0.2089 31 1 6.8996 -0.6815 -1.4927 32 1 9.3132 -0.1167 -1.2398 33 1 9.0206 0.3324 0.4574 34 1 7.9300 5.2986 -1.9888 35 1 6.7629 3.1992 -0.3367 36 1 7.6346 2.3873 0.9892 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597904553.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:17:41 Heat of formation + Delta-G solvation = 12.359553 kcal Electronic energy + Delta-G solvation = -19915.235670 eV Core-core repulsion = 16912.335666 eV Total energy + Delta-G solvation = -3002.900004 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.36464 -38.21379 -36.56451 -33.78210 -32.94767 -31.63059 -29.70676 -28.29894 -26.24286 -24.93110 -23.54983 -21.73878 -20.66443 -19.67414 -18.54697 -18.24231 -16.68213 -15.91596 -15.44011 -15.06019 -14.52130 -14.25611 -14.06069 -13.75015 -13.35127 -13.20533 -13.06654 -12.77775 -12.64374 -12.55911 -12.05006 -11.80839 -11.30774 -11.05941 -10.96925 -10.61840 -10.42580 -10.21936 -9.93134 -9.74985 -9.49915 -9.29180 -9.07464 -8.76310 -8.69370 -8.40642 -7.69114 -5.98092 -4.06580 0.57981 1.39123 1.84556 1.94607 3.31463 3.39790 3.43171 3.69411 3.73658 4.44482 4.55589 4.87348 5.11334 5.16118 5.25882 5.32386 5.57658 5.68832 5.71206 5.75053 5.83694 5.96770 6.23991 6.36472 6.40600 6.57033 6.71887 6.76666 6.93945 7.03481 7.20002 7.33034 7.65913 7.89818 8.01766 8.26705 8.40510 8.78673 8.98137 9.58997 11.07516 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.031721 B = 0.004670 C = 0.004174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.480587 B = 5994.403927 C = 6707.190129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.241 4.241 3 C -0.141 4.141 4 C 0.073 3.927 5 C 0.574 3.426 6 O -0.528 6.528 7 N -0.582 5.582 8 C 0.070 3.930 9 C -0.126 4.126 10 C -0.112 4.112 11 C 0.040 3.960 12 H 0.028 0.972 13 C -0.519 4.519 14 H 0.059 0.941 15 C 0.062 3.938 16 N -0.882 5.882 17 Si 0.893 3.107 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.283 1.283 21 C 0.112 3.888 22 N -0.504 5.504 23 S 0.406 5.594 24 H 0.079 0.921 25 H 0.073 0.927 26 H 0.078 0.922 27 H 0.170 0.830 28 H 0.052 0.948 29 H 0.139 0.861 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.050 0.950 33 H 0.048 0.952 34 H 0.263 0.737 35 H 0.122 0.878 36 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.040 -12.493 4.643 19.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.372 4.372 3 C -0.174 4.174 4 C -0.101 4.101 5 C 0.355 3.645 6 O -0.404 6.404 7 N -0.313 5.313 8 C -0.057 4.057 9 C -0.165 4.165 10 C -0.149 4.149 11 C 0.021 3.979 12 H 0.047 0.953 13 C -0.557 4.557 14 H 0.077 0.923 15 C -0.141 4.141 16 N -0.520 5.520 17 Si 0.721 3.279 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.210 1.210 21 C -0.008 4.008 22 N -0.336 5.336 23 S 0.565 5.435 24 H 0.097 0.903 25 H 0.091 0.909 26 H 0.097 0.903 27 H 0.188 0.812 28 H 0.070 0.930 29 H 0.154 0.846 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.073 0.927 35 H 0.140 0.860 36 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -13.544 -13.699 4.494 19.781 hybrid contribution 0.609 2.534 -0.085 2.608 sum -12.935 -11.165 4.409 17.646 Atomic orbital electron populations 1.20198 0.86335 1.03474 1.03139 1.25985 1.02988 0.99949 1.08263 1.21286 0.90311 1.01887 1.03870 1.21500 0.95558 0.89290 1.03781 1.17349 0.81895 0.86524 0.78705 1.90804 1.82645 1.16361 1.50633 1.48353 1.05722 1.11365 1.65901 1.22877 1.02431 0.83106 0.97280 1.21906 0.97105 0.98250 0.99209 1.21709 0.95587 0.97277 1.00376 1.18975 0.94094 0.90294 0.94537 0.95349 1.21128 0.93307 0.94929 1.46377 0.92251 1.25060 0.95877 0.98242 0.94885 1.69893 1.21610 1.15325 1.45151 0.86523 0.83067 0.80688 0.77661 1.19777 1.21007 1.20956 1.22385 0.85257 0.94268 0.98876 1.72722 1.24610 1.11047 1.25249 1.80618 0.89679 1.14171 1.59018 0.90263 0.90855 0.90316 0.81248 0.92969 0.84577 0.92465 0.92427 0.93158 0.93292 0.92696 0.85967 0.93723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.50 10.46 36.01 0.38 -0.13 16 2 C -0.24 -2.61 6.58 -35.46 -0.23 -2.85 16 3 C -0.14 -2.02 9.93 -40.27 -0.40 -2.42 16 4 C 0.07 1.27 6.51 -84.06 -0.55 0.72 16 5 C 0.57 12.50 7.66 -12.40 -0.10 12.40 16 6 O -0.53 -13.21 16.13 5.30 0.09 -13.13 16 7 N -0.58 -12.77 2.97 -173.94 -0.52 -13.29 16 8 C 0.07 1.27 6.24 -3.71 -0.02 1.24 16 9 C -0.13 -2.29 6.11 -26.45 -0.16 -2.45 16 10 C -0.11 -2.36 5.11 -26.53 -0.14 -2.50 16 11 C 0.04 1.03 2.25 -91.65 -0.21 0.82 16 12 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 13 C -0.52 -14.38 8.56 -34.44 -0.29 -14.68 16 14 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 15 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 16 N -0.88 -26.11 11.39 55.43 0.63 -25.48 16 17 Si 0.89 21.54 29.54 -169.99 -5.02 16.51 16 18 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 19 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 20 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 21 C 0.11 2.84 5.38 -3.72 -0.02 2.82 16 22 N -0.50 -7.65 7.31 24.84 0.18 -7.46 16 23 S 0.41 4.38 23.20 -107.50 -2.49 1.88 16 24 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.17 2.36 8.00 -52.49 -0.42 1.94 16 28 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.14 2.30 3.58 -91.80 -0.33 1.97 16 30 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 33 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 35 H 0.12 3.55 5.17 -51.93 -0.27 3.28 16 36 H 0.04 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 306.20 15.07 4.61 4.61 Total: -1.00 -31.98 306.20 -9.14 -41.12 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: -4.79 Total: 0.59 kcal Atomic # 6 Polarization: -3.52 SS G_CDS: -1.84 Total: -5.36 kcal Atomic # 7 Polarization: -46.53 SS G_CDS: 0.30 Total: -46.24 kcal Atomic # 8 Polarization: -13.21 SS G_CDS: 0.09 Total: -13.13 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 16 Polarization: 4.38 SS G_CDS: -2.49 Total: 1.88 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -31.98 -9.14 -41.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597904553.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.480 kcal (2) G-P(sol) polarization free energy of solvation -31.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.120 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds