Wall clock time and date at job start Tue Mar 31 2020 01:17:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35000 * 127.27777 * 2 1 4 4 C 1.39481 * 111.68756 * 179.97438 * 3 2 1 5 5 C 1.47694 * 122.10651 * 180.02562 * 4 3 2 6 6 O 1.21579 * 119.99808 * 351.60791 * 5 4 3 7 7 N 1.34771 * 120.00552 * 171.61026 * 5 4 3 8 8 C 1.46933 * 120.62812 * 353.07946 * 7 5 4 9 9 C 1.53190 * 108.89292 * 126.34364 * 8 7 5 10 10 C 1.53351 * 109.15251 * 54.57710 * 9 8 7 11 11 C 1.53041 * 109.60643 * 298.71638 * 10 9 8 12 12 H 1.09004 * 109.49253 * 301.41562 * 11 10 9 13 13 C 1.50700 * 109.49766 * 181.32394 * 11 10 9 14 14 H 1.08000 * 119.99828 * 0.15795 * 13 11 10 15 15 C 1.37867 * 120.00063 * 180.15812 * 13 11 10 16 16 N 1.31517 * 120.00252 * 0.02562 * 15 13 11 17 17 Si 1.86801 * 120.00169 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47069 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47414 * 120.00263 * 17 15 13 20 20 H 1.48499 * 109.47099 * 240.00016 * 17 15 13 21 21 C 1.46919 * 120.63742 * 173.10176 * 7 5 4 22 22 N 1.30604 * 115.79306 * 0.26842 * 4 3 2 23 23 S 1.56140 * 109.79788 * 359.57894 * 22 4 3 24 24 H 1.08996 * 109.46999 * 90.00232 * 1 2 3 25 25 H 1.08996 * 109.46697 * 209.99901 * 1 2 3 26 26 H 1.08996 * 109.46999 * 329.99906 * 1 2 3 27 27 H 1.08002 * 124.15549 * 359.94551 * 3 2 1 28 28 H 1.08999 * 109.58789 * 246.19796 * 8 7 5 29 29 H 1.09004 * 109.58828 * 6.48350 * 8 7 5 30 30 H 1.09000 * 109.49782 * 174.66126 * 9 8 7 31 31 H 1.09006 * 109.49791 * 294.75197 * 9 8 7 32 32 H 1.08999 * 109.41845 * 178.67548 * 10 9 8 33 33 H 1.09000 * 109.42112 * 58.75041 * 10 9 8 34 34 H 0.96998 * 120.00262 * 180.02562 * 16 15 13 35 35 H 1.09004 * 109.58766 * 353.37577 * 21 7 5 36 36 H 1.08996 * 109.59207 * 113.79794 * 21 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3247 1.0742 0.0000 4 6 3.6681 0.6993 0.0006 5 6 4.7605 1.6934 0.0013 6 8 4.5090 2.8730 -0.1523 7 7 6.0360 1.2931 0.1721 8 6 6.3434 -0.1037 0.5089 9 6 7.3566 -0.6467 -0.5037 10 6 8.5791 0.2785 -0.5377 11 6 8.1510 1.6791 -0.9820 12 1 7.6868 1.6223 -1.9666 13 6 9.3591 2.5777 -1.0459 14 1 10.3353 2.1884 -0.7973 15 6 9.2181 3.8966 -1.4217 16 7 8.0292 4.3708 -1.7240 17 14 10.7154 5.0107 -1.5002 18 1 11.9255 4.2416 -1.1137 19 1 10.8769 5.5263 -2.8835 20 1 10.5342 6.1501 -0.5653 21 6 7.1455 2.2450 0.0256 22 7 3.8995 -0.5860 -0.0045 23 16 2.5473 -1.3668 0.0008 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3632 -0.8900 0.5138 26 1 -0.3633 0.8899 0.5138 27 1 1.9808 2.0980 -0.0008 28 1 6.7671 -0.1530 1.5119 29 1 5.4311 -0.6988 0.4680 30 1 7.6636 -1.6501 -0.2089 31 1 6.8996 -0.6815 -1.4927 32 1 9.3132 -0.1167 -1.2398 33 1 9.0206 0.3324 0.4574 34 1 7.9300 5.2986 -1.9888 35 1 6.7629 3.1992 -0.3367 36 1 7.6346 2.3873 0.9892 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597904553.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:17:40 Heat of formation + Delta-G solvation = -8.153852 kcal Electronic energy + Delta-G solvation = -19916.125198 eV Core-core repulsion = 16912.335666 eV Total energy + Delta-G solvation = -3003.789532 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.76123 -39.66933 -38.31384 -35.43445 -34.28276 -33.35191 -31.56490 -29.25339 -27.81564 -26.79702 -25.04833 -23.48659 -21.91274 -21.16162 -20.06511 -19.48672 -18.55607 -17.61726 -17.01708 -16.55374 -16.40883 -15.63854 -15.44742 -15.18809 -14.80885 -14.57223 -14.35496 -14.08143 -13.94322 -13.71866 -13.66255 -13.32308 -12.92196 -12.86334 -12.38157 -12.32006 -12.15336 -11.98834 -11.72430 -11.35364 -11.21048 -11.00945 -10.58951 -10.51712 -10.22047 -9.81516 -9.41221 -8.13780 -6.31513 -0.51687 0.45374 0.69571 0.77621 1.39028 1.40142 1.52931 2.13310 2.18084 2.40833 3.14282 3.48369 3.70247 4.16678 4.18032 4.18245 4.29329 4.36721 4.56543 4.70020 4.73833 4.79546 4.80371 4.91787 5.02393 5.09636 5.18518 5.21754 5.25032 5.30710 5.38162 5.52950 5.62961 5.83917 5.93459 6.28617 6.55936 6.80654 7.11832 7.38970 8.90618 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.031721 B = 0.004670 C = 0.004174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.480587 B = 5994.403927 C = 6707.190129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.224 4.224 3 C -0.166 4.166 4 C 0.045 3.955 5 C 0.563 3.437 6 O -0.580 6.580 7 N -0.591 5.591 8 C 0.064 3.936 9 C -0.117 4.117 10 C -0.106 4.106 11 C 0.039 3.961 12 H -0.015 1.015 13 C -0.536 4.536 14 H 0.064 0.936 15 C 0.009 3.991 16 N -0.918 5.918 17 Si 0.963 3.037 18 H -0.260 1.260 19 H -0.281 1.281 20 H -0.281 1.281 21 C 0.125 3.875 22 N -0.539 5.539 23 S 0.519 5.481 24 H 0.095 0.905 25 H 0.102 0.898 26 H 0.085 0.915 27 H 0.161 0.839 28 H 0.064 0.936 29 H 0.161 0.839 30 H 0.100 0.900 31 H 0.044 0.956 32 H 0.054 0.946 33 H 0.056 0.944 34 H 0.261 0.739 35 H 0.079 0.921 36 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.277 -15.599 5.383 22.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.355 4.355 3 C -0.198 4.198 4 C -0.126 4.126 5 C 0.348 3.652 6 O -0.460 6.460 7 N -0.321 5.321 8 C -0.061 4.061 9 C -0.156 4.156 10 C -0.143 4.143 11 C 0.020 3.980 12 H 0.003 0.997 13 C -0.574 4.574 14 H 0.082 0.918 15 C -0.190 4.190 16 N -0.557 5.557 17 Si 0.788 3.212 18 H -0.184 1.184 19 H -0.207 1.207 20 H -0.207 1.207 21 C 0.002 3.998 22 N -0.374 5.374 23 S 0.678 5.322 24 H 0.113 0.887 25 H 0.120 0.880 26 H 0.104 0.896 27 H 0.179 0.821 28 H 0.082 0.918 29 H 0.177 0.823 30 H 0.118 0.882 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.098 0.902 36 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -14.771 -16.838 5.246 23.005 hybrid contribution 0.810 3.323 -0.327 3.436 sum -13.961 -13.515 4.919 20.044 Atomic orbital electron populations 1.20454 0.83100 1.05287 1.04654 1.26489 1.04983 0.98923 1.05122 1.21225 0.89764 1.02790 1.06013 1.20828 0.94726 0.89059 1.08005 1.18061 0.82818 0.87039 0.77284 1.90748 1.83650 1.18889 1.52713 1.48381 1.05218 1.12365 1.66101 1.23223 1.03989 0.81136 0.97735 1.21860 0.95422 0.99536 0.98739 1.21601 0.97178 0.95026 1.00530 1.18901 0.93398 0.93158 0.92527 0.99654 1.21532 0.94142 0.95629 1.46103 0.91793 1.25941 0.98716 0.99916 0.94474 1.70092 1.23969 1.15449 1.46175 0.85435 0.79661 0.78531 0.77620 1.18362 1.20662 1.20726 1.21828 0.86283 0.93666 0.97980 1.71959 1.29166 1.10357 1.25947 1.80151 0.86318 1.11036 1.54709 0.88675 0.87980 0.89624 0.82112 0.91819 0.82336 0.88173 0.93706 0.92754 0.92538 0.92997 0.90244 0.94410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.73 10.46 71.24 0.75 0.01 16 2 C -0.22 -4.16 6.58 24.94 0.16 -3.99 16 3 C -0.17 -4.69 9.93 21.82 0.22 -4.47 16 4 C 0.05 1.57 6.51 42.13 0.27 1.84 16 5 C 0.56 26.02 7.66 86.74 0.66 26.69 16 6 O -0.58 -31.51 16.13 -3.96 -0.06 -31.58 16 7 N -0.59 -27.10 2.97 -822.49 -2.45 -29.55 16 8 C 0.06 2.28 6.24 86.36 0.54 2.82 16 9 C -0.12 -4.11 6.11 30.78 0.19 -3.92 16 10 C -0.11 -4.47 5.11 30.73 0.16 -4.31 16 11 C 0.04 2.12 2.25 -11.46 -0.03 2.09 16 12 H -0.01 -0.91 8.14 -2.38 -0.02 -0.92 16 13 C -0.54 -30.68 8.56 25.60 0.22 -30.46 16 14 H 0.06 3.51 7.74 -2.91 -0.02 3.49 16 15 C 0.01 0.50 5.30 84.65 0.45 0.95 16 16 N -0.92 -57.45 11.39 21.44 0.24 -57.20 16 17 Si 0.96 45.34 29.54 68.60 2.03 47.37 16 18 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 19 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 20 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 21 C 0.12 6.72 5.38 86.36 0.46 7.19 16 22 N -0.54 -15.37 7.31 -75.33 -0.55 -15.92 16 23 S 0.52 9.09 23.20 -56.49 -1.31 7.78 16 24 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 25 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 26 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.16 4.69 8.00 -2.91 -0.02 4.66 16 28 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 29 H 0.16 5.09 3.58 -81.12 -0.29 4.80 16 30 H 0.10 2.69 8.14 -2.39 -0.02 2.67 16 31 H 0.04 1.68 8.14 -2.38 -0.02 1.66 16 32 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 33 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 34 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 35 H 0.08 5.01 5.17 -2.39 -0.01 4.99 16 36 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 Total: -1.00 -76.29 306.20 2.76 -73.52 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: 0.81 Total: 11.13 kcal Atomic # 6 Polarization: -9.62 SS G_CDS: 4.06 Total: -5.56 kcal Atomic # 7 Polarization: -99.91 SS G_CDS: -2.75 Total: -102.66 kcal Atomic # 8 Polarization: -31.51 SS G_CDS: -0.06 Total: -31.58 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal Atomic # 16 Polarization: 9.09 SS G_CDS: -1.31 Total: 7.78 kcal Total: -76.29 2.76 -73.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597904553.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.370 kcal (2) G-P(sol) polarization free energy of solvation -76.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds