Wall clock time and date at job start Tue Mar 31 2020 01:36:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50696 * 109.47035 * 2 1 4 4 C 1.38398 * 120.45281 * 265.02431 * 3 2 1 5 5 C 1.38800 * 118.49631 * 179.72736 * 4 3 2 6 6 C 1.38112 * 119.30544 * 0.47701 * 5 4 3 7 7 C 1.50706 * 119.57419 * 179.79516 * 6 5 4 8 8 N 1.31900 * 120.85065 * 359.51426 * 6 5 4 9 9 C 1.32384 * 121.63877 * 0.25289 * 8 6 5 10 10 N 1.39403 * 119.69580 * 180.02562 * 9 8 6 11 11 C 1.34773 * 120.00633 * 0.02562 * 10 9 8 12 12 O 1.21279 * 119.99584 * 359.97438 * 11 10 9 13 13 C 1.50695 * 120.00223 * 180.02562 * 11 10 9 14 14 S 1.81011 * 109.46973 * 179.97438 * 13 11 10 15 15 C 1.76196 * 99.99613 * 179.97438 * 14 13 11 16 16 H 1.08001 * 120.00832 * 0.02562 * 15 14 13 17 17 C 1.38807 * 119.99525 * 179.97438 * 15 14 13 18 18 N 1.31622 * 120.00136 * 0.02562 * 17 15 14 19 19 Si 1.86806 * 119.99759 * 180.02562 * 17 15 14 20 20 H 1.48490 * 109.46901 * 90.00407 * 19 17 15 21 21 H 1.48499 * 109.46815 * 210.00330 * 19 17 15 22 22 H 1.48503 * 109.47225 * 330.00426 * 19 17 15 23 23 H 1.09000 * 109.47054 * 179.97438 * 1 2 3 24 24 H 1.09007 * 109.47033 * 299.99320 * 1 2 3 25 25 H 1.08996 * 109.47442 * 59.99882 * 1 2 3 26 26 H 1.08999 * 109.47133 * 240.00403 * 2 1 3 27 27 H 1.08999 * 109.47195 * 120.00581 * 2 1 3 28 28 H 1.08008 * 120.75010 * 0.02562 * 4 3 2 29 29 H 1.07997 * 120.34227 * 180.26602 * 5 4 3 30 30 H 1.09001 * 109.46953 * 269.72118 * 7 6 5 31 31 H 1.09000 * 109.47318 * 29.71715 * 7 6 5 32 32 H 1.09000 * 109.47161 * 149.72346 * 7 6 5 33 33 H 0.97001 * 119.99711 * 180.02562 * 10 9 8 34 34 H 1.08997 * 109.46836 * 299.99446 * 13 11 10 35 35 H 1.08997 * 109.47312 * 59.99591 * 13 11 10 36 36 H 0.97002 * 120.00482 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3637 2.0476 -1.1886 5 6 2.8167 3.3588 -1.1419 6 6 2.9321 3.9910 0.0806 7 6 3.4278 5.4130 0.1388 8 7 2.6088 3.3681 1.1974 9 6 2.1686 2.1196 1.1938 10 7 1.8380 1.5004 2.3982 11 6 1.9665 2.1727 3.5592 12 8 2.3703 3.3163 3.5562 13 6 1.6096 1.5031 4.8612 14 16 1.8888 2.6556 6.2288 15 6 1.4047 1.6422 7.5864 16 1 1.0650 0.6320 7.4122 17 6 1.4610 2.1420 8.8802 18 7 1.8755 3.3731 9.0927 19 14 0.9485 1.0674 10.3197 20 1 2.1280 0.3189 10.8231 21 1 0.4038 1.9215 11.4056 22 1 -0.0938 0.1078 9.8746 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 2.2673 1.5299 -2.1315 29 1 3.0795 3.8779 -2.0517 30 1 4.5129 5.4156 0.2425 31 1 3.1493 5.9327 -0.7780 32 1 2.9799 5.9193 0.9938 33 1 1.5154 0.5856 2.4007 34 1 0.5604 1.2083 4.8425 35 1 2.2329 0.6195 4.9982 36 1 1.9146 3.7225 9.9967 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598860710.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:36:52 Heat of formation + Delta-G solvation = -2.318831 kcal Electronic energy + Delta-G solvation = -18914.902894 eV Core-core repulsion = 15911.366387 eV Total energy + Delta-G solvation = -3003.536507 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.87269 -38.73687 -35.65741 -34.16196 -32.43866 -31.48391 -31.23384 -29.10965 -27.08587 -25.50849 -23.68267 -23.33500 -21.26817 -20.38987 -18.06131 -17.38940 -16.75693 -15.74590 -15.53929 -15.34245 -14.81295 -14.42939 -14.25602 -14.20276 -13.87023 -13.41045 -13.16652 -12.98156 -12.61504 -12.56732 -12.37296 -12.09278 -11.83131 -11.57504 -11.20188 -11.06947 -11.03346 -10.78237 -10.47898 -9.86933 -9.82790 -9.53087 -9.07405 -8.80441 -8.25733 -8.05854 -6.51590 -6.22458 -3.93465 1.08338 1.34104 2.82927 3.06478 3.22105 3.24862 3.29848 3.54777 3.89299 4.18778 4.30814 4.57248 4.66684 4.79275 4.97612 5.08282 5.11846 5.12841 5.17568 5.33581 5.51783 5.59044 5.61051 5.62560 5.65898 5.75392 5.82947 5.95521 6.02435 6.08020 6.11156 6.16815 6.37865 6.85669 7.32612 7.58713 8.19087 8.34142 8.59336 9.22738 10.84962 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.026477 B = 0.003848 C = 0.003401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.257790 B = 7274.620493 C = 8230.352319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.076 4.076 3 C -0.186 4.186 4 C -0.045 4.045 5 C -0.212 4.212 6 C 0.158 3.842 7 C -0.104 4.104 8 N -0.473 5.473 9 C 0.380 3.620 10 N -0.665 5.665 11 C 0.517 3.483 12 O -0.445 6.445 13 C -0.153 4.153 14 S -0.055 6.055 15 C -0.537 4.537 16 H 0.073 0.927 17 C 0.074 3.926 18 N -0.867 5.867 19 Si 0.919 3.081 20 H -0.277 1.277 21 H -0.282 1.282 22 H -0.272 1.272 23 H 0.061 0.939 24 H 0.056 0.944 25 H 0.057 0.943 26 H 0.076 0.924 27 H 0.069 0.931 28 H 0.133 0.867 29 H 0.131 0.869 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.413 0.587 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.483 -5.748 -21.738 22.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.115 4.115 3 C -0.192 4.192 4 C -0.071 4.071 5 C -0.234 4.234 6 C 0.019 3.981 7 C -0.161 4.161 8 N -0.188 5.188 9 C 0.148 3.852 10 N -0.314 5.314 11 C 0.302 3.698 12 O -0.311 6.311 13 C -0.304 4.304 14 S 0.172 5.828 15 C -0.685 4.685 16 H 0.091 0.909 17 C -0.135 4.135 18 N -0.502 5.502 19 Si 0.745 3.255 20 H -0.203 1.203 21 H -0.207 1.207 22 H -0.197 1.197 23 H 0.080 0.920 24 H 0.075 0.925 25 H 0.076 0.924 26 H 0.095 0.905 27 H 0.088 0.912 28 H 0.151 0.849 29 H 0.149 0.851 30 H 0.096 0.904 31 H 0.091 0.909 32 H 0.100 0.900 33 H 0.251 0.749 34 H 0.110 0.890 35 H 0.110 0.890 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.291 -3.246 -20.659 20.915 hybrid contribution -1.028 -2.978 0.133 3.153 sum -0.738 -6.224 -20.527 21.462 Atomic orbital electron populations 1.21805 0.94567 1.01934 1.02539 1.20382 0.96229 0.91841 1.03003 1.20220 1.08206 0.98253 0.92540 1.21171 0.94667 0.94171 0.97111 1.21785 1.06565 0.96171 0.98863 1.21208 0.92871 0.96523 0.87544 1.20721 1.01674 0.90360 1.03363 1.67577 1.13470 1.07532 1.30197 1.18334 0.92494 0.89166 0.85242 1.43945 1.65781 1.17401 1.04245 1.20616 0.78036 0.87038 0.84115 1.90810 1.38580 1.16092 1.85600 1.23563 1.04644 1.05274 0.96906 1.85447 1.86618 1.16880 0.93890 1.22867 1.51400 1.01569 0.92696 0.90865 1.24989 0.94766 0.95405 0.98350 1.70012 1.43735 1.14480 1.21991 0.86162 0.78815 0.79732 0.80762 1.20254 1.20733 1.19676 0.92043 0.92454 0.92397 0.90512 0.91225 0.84909 0.85107 0.90379 0.90913 0.89979 0.74917 0.88990 0.88995 0.92140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.89 37.16 0.37 -0.81 16 2 C -0.08 -0.63 5.51 -27.88 -0.15 -0.79 16 3 C -0.19 -2.15 5.17 -104.28 -0.54 -2.69 16 4 C -0.05 -0.46 9.83 -39.31 -0.39 -0.85 16 5 C -0.21 -2.31 9.73 -39.42 -0.38 -2.69 16 6 C 0.16 2.20 6.78 -82.61 -0.56 1.64 16 7 C -0.10 -1.19 10.17 36.01 0.37 -0.82 16 8 N -0.47 -8.33 7.78 -8.60 -0.07 -8.40 16 9 C 0.38 5.85 7.41 -154.69 -1.15 4.70 16 10 N -0.67 -10.08 5.30 -11.43 -0.06 -10.14 16 11 C 0.52 10.18 7.81 -10.99 -0.09 10.09 16 12 O -0.44 -10.60 14.11 5.56 0.08 -10.52 16 13 C -0.15 -3.10 6.16 36.00 0.22 -2.88 16 14 S -0.05 -1.49 20.57 -107.50 -2.21 -3.71 16 15 C -0.54 -15.28 9.50 30.94 0.29 -14.99 16 16 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 17 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 18 N -0.87 -26.19 13.22 55.49 0.73 -25.45 16 19 Si 0.92 21.37 29.55 -169.99 -5.02 16.34 16 20 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 22 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 23 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 24 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 25 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.08 0.51 8.06 -51.93 -0.42 0.09 16 27 H 0.07 0.54 6.83 -51.93 -0.35 0.19 16 28 H 0.13 0.92 8.06 -52.48 -0.42 0.50 16 29 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 30 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.07 0.61 8.07 -51.93 -0.42 0.19 16 32 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.41 4.70 6.79 -40.82 -0.28 4.42 16 34 H 0.09 1.70 8.14 -51.92 -0.42 1.27 16 35 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 36 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 324.30 15.07 4.89 4.89 Total: -1.00 -35.71 324.30 -8.58 -44.30 By element: Atomic # 1 Polarization: 5.57 SS G_CDS: -4.82 Total: 0.75 kcal Atomic # 6 Polarization: -5.96 SS G_CDS: -2.10 Total: -8.06 kcal Atomic # 7 Polarization: -44.60 SS G_CDS: 0.61 Total: -43.99 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: 0.08 Total: -10.52 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: -1.49 SS G_CDS: -2.21 Total: -3.71 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -35.71 -8.58 -44.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598860710.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.979 kcal (2) G-P(sol) polarization free energy of solvation -35.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds