Wall clock time and date at job start Tue Mar 31 2020 01:13:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 S 1.75874 * 125.20145 * 2 1 4 4 C 1.75861 * 91.04392 * 180.02562 * 3 2 1 5 5 C 1.33384 * 109.69867 * 359.75388 * 4 3 2 6 6 C 1.33785 * 125.19998 * 180.02562 * 2 1 3 7 7 N 1.40810 * 122.61236 * 359.95491 * 6 2 1 8 8 C 1.34782 * 119.99992 * 187.86554 * 7 6 2 9 9 O 1.21613 * 119.99609 * 5.63888 * 8 7 6 10 10 N 1.34775 * 120.00344 * 185.63674 * 8 7 6 11 11 C 1.46499 * 119.99807 * 179.72719 * 10 8 7 12 12 C 1.53000 * 109.46765 * 179.74761 * 11 10 8 13 13 C 1.50701 * 115.55276 * 59.81896 * 12 11 10 14 14 H 1.08000 * 119.99791 * 266.18641 * 13 12 11 15 15 C 1.37874 * 120.00003 * 86.18386 * 13 12 11 16 16 N 1.31514 * 120.00105 * 353.95806 * 15 13 12 17 17 Si 1.86796 * 120.00050 * 173.95720 * 15 13 12 18 18 H 1.48502 * 109.47068 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.47109 * 119.99770 * 17 15 13 20 20 H 1.48492 * 109.47378 * 239.99990 * 17 15 13 21 21 C 1.52998 * 117.49702 * 274.14686 * 12 11 10 22 22 C 1.53008 * 117.49534 * 205.49110 * 12 11 10 23 23 H 1.08995 * 109.47141 * 269.98193 * 1 2 3 24 24 H 1.09008 * 109.46656 * 29.97669 * 1 2 3 25 25 H 1.08996 * 109.47024 * 149.97877 * 1 2 3 26 26 H 1.07996 * 125.15033 * 180.02562 * 4 3 2 27 27 H 1.07999 * 122.55390 * 180.22123 * 5 4 3 28 28 H 0.96994 * 120.00331 * 7.86665 * 7 6 2 29 29 H 0.96993 * 119.99540 * 359.97438 * 10 8 7 30 30 H 1.09003 * 109.47404 * 299.74395 * 11 10 8 31 31 H 1.08999 * 109.47500 * 59.74894 * 11 10 8 32 32 H 0.97001 * 120.00200 * 185.06744 * 16 15 13 33 33 H 1.09002 * 117.50146 * 0.02562 * 21 12 11 34 34 H 1.09000 * 117.49811 * 145.02262 * 21 12 11 35 35 H 1.09001 * 117.49570 * 214.97905 * 22 12 11 36 36 H 1.08994 * 117.49783 * 359.97397 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5208 1.4371 0.0000 4 6 3.9761 0.4497 -0.0008 5 6 3.6430 -0.8419 0.0044 6 6 2.2782 -1.0932 -0.0005 7 7 1.7464 -2.3970 -0.0001 8 6 2.5627 -3.4577 0.1591 9 8 3.7414 -3.2864 0.4046 10 7 2.0727 -4.7081 0.0462 11 6 2.9612 -5.8609 0.2134 12 6 2.1585 -7.1523 0.0433 13 6 1.4802 -7.3250 -1.2912 14 1 0.4543 -7.0129 -1.4199 15 6 2.1692 -7.8815 -2.3479 16 7 3.4506 -8.1518 -2.2279 17 14 1.2826 -8.2514 -3.9499 18 1 -0.1438 -7.8564 -3.8288 19 1 1.9155 -7.4862 -5.0541 20 1 1.3713 -9.7048 -4.2406 21 6 1.4428 -7.7067 1.2767 22 6 2.6894 -8.4101 0.7341 23 1 -0.3633 -0.0003 1.0276 24 1 -0.3633 0.8903 -0.5135 25 1 -0.3633 -0.8898 -0.5141 26 1 4.9864 0.8313 -0.0007 27 1 4.3794 -1.6319 0.0085 28 1 0.7927 -2.5319 -0.1145 29 1 1.1325 -4.8447 -0.1492 30 1 3.7511 -5.8226 -0.5368 31 1 3.4042 -5.8369 1.2090 32 1 3.9520 -8.4743 -2.9932 33 1 1.5434 -7.1513 2.2091 34 1 0.4814 -8.1968 1.1228 35 1 2.5476 -9.3626 0.2234 36 1 3.6106 -8.3176 1.3093 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603080941.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:13:50 Heat of formation + Delta-G solvation = 30.708778 kcal Electronic energy + Delta-G solvation = -19293.353553 eV Core-core repulsion = 16291.249231 eV Total energy + Delta-G solvation = -3002.104322 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.26272 -37.82143 -36.60118 -33.86901 -33.02066 -32.01512 -31.64924 -26.88523 -25.83088 -25.03339 -22.72527 -21.40729 -20.99558 -19.63176 -18.81718 -18.05935 -16.74156 -16.42532 -15.67508 -15.24352 -14.78707 -14.69382 -14.11063 -13.89498 -13.64800 -13.27217 -13.15941 -12.75527 -12.47333 -12.35649 -11.87509 -11.67178 -11.64321 -11.05923 -10.97453 -10.83503 -10.56147 -10.32286 -10.26970 -9.67767 -9.46250 -9.02694 -8.55159 -8.43118 -8.42482 -8.16571 -7.57449 -6.12742 -4.21980 1.08607 1.69946 2.03042 2.80472 3.13852 3.21541 3.31018 3.32237 3.73894 4.30789 4.58793 4.88659 5.13575 5.15585 5.26988 5.32851 5.45429 5.67395 5.85092 5.96401 6.04867 6.23427 6.28365 6.35269 6.42599 6.51238 6.65588 6.77287 6.93307 7.04929 7.23428 7.33077 7.36716 7.48980 7.76288 8.28162 8.43936 8.79064 8.97523 9.45529 10.95042 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.022585 B = 0.004071 C = 0.003870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.490709 B = 6876.552248 C = 7234.179667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.254 4.254 3 S 0.082 5.918 4 C -0.204 4.204 5 C -0.139 4.139 6 C 0.175 3.825 7 N -0.674 5.674 8 C 0.699 3.301 9 O -0.584 6.584 10 N -0.710 5.710 11 C 0.180 3.820 12 C 0.025 3.975 13 C -0.501 4.501 14 H 0.060 0.940 15 C 0.075 3.925 16 N -0.873 5.873 17 Si 0.890 3.110 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.283 1.283 21 C -0.211 4.211 22 C -0.145 4.145 23 H 0.069 0.931 24 H 0.067 0.933 25 H 0.068 0.932 26 H 0.165 0.835 27 H 0.183 0.817 28 H 0.405 0.595 29 H 0.399 0.601 30 H 0.072 0.928 31 H 0.038 0.962 32 H 0.262 0.738 33 H 0.065 0.935 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.584 14.417 4.245 15.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.376 4.376 3 S 0.342 5.658 4 C -0.340 4.340 5 C -0.170 4.170 6 C 0.067 3.933 7 N -0.321 5.321 8 C 0.399 3.601 9 O -0.463 6.463 10 N -0.361 5.361 11 C 0.057 3.943 12 C 0.025 3.975 13 C -0.539 4.539 14 H 0.078 0.922 15 C -0.130 4.130 16 N -0.509 5.509 17 Si 0.717 3.283 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.209 1.209 21 C -0.248 4.248 22 C -0.183 4.183 23 H 0.088 0.912 24 H 0.086 0.914 25 H 0.086 0.914 26 H 0.182 0.818 27 H 0.200 0.800 28 H 0.241 0.759 29 H 0.233 0.767 30 H 0.090 0.910 31 H 0.056 0.944 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.096 0.904 35 H 0.103 0.897 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.611 15.812 4.372 16.797 hybrid contribution -0.929 -1.905 -1.138 2.406 sum -4.539 13.906 3.234 14.981 Atomic orbital electron populations 1.20108 0.87969 1.02590 1.02219 1.23645 0.99646 0.94660 1.19605 1.83902 0.97053 1.08633 1.76172 1.25510 1.01592 0.96258 1.10607 1.20977 0.96126 0.97890 1.02027 1.16536 0.92241 0.83385 1.01129 1.42619 1.10756 1.02977 1.75728 1.16022 0.84838 0.80717 0.78533 1.90712 1.15097 1.84306 1.56224 1.45175 1.13787 1.03519 1.73641 1.20918 0.91824 0.82788 0.98793 1.19042 0.97321 0.89816 0.91358 1.20347 0.98194 1.41716 0.93635 0.92181 1.24982 0.94872 0.94517 0.98584 1.69979 1.06781 1.43755 1.30353 0.86585 0.79963 0.78162 0.83571 1.19735 1.21034 1.20901 1.23051 0.96815 1.06879 0.98069 1.22478 0.94576 0.98442 1.02846 0.91245 0.91417 0.91364 0.81767 0.80046 0.75944 0.76698 0.90965 0.94416 0.92837 0.91619 0.90353 0.89733 0.91604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.66 10.09 36.01 0.36 -0.30 16 2 C -0.25 -3.20 6.52 -35.87 -0.23 -3.44 16 3 S 0.08 0.94 23.32 -107.50 -2.51 -1.56 16 4 C -0.20 -2.63 11.22 29.04 0.33 -2.30 16 5 C -0.14 -2.19 9.05 -41.08 -0.37 -2.57 16 6 C 0.18 2.64 6.53 -85.09 -0.56 2.09 16 7 N -0.67 -10.15 5.43 -15.19 -0.08 -10.23 16 8 C 0.70 13.11 8.50 -86.91 -0.74 12.37 16 9 O -0.58 -12.68 13.17 5.27 0.07 -12.61 16 10 N -0.71 -13.42 5.43 -65.22 -0.35 -13.77 16 11 C 0.18 3.96 5.52 -4.04 -0.02 3.94 16 12 C 0.03 0.58 1.46 -155.66 -0.23 0.35 16 13 C -0.50 -12.50 8.40 -34.44 -0.29 -12.79 16 14 H 0.06 1.47 7.82 -52.49 -0.41 1.06 16 15 C 0.07 1.94 5.38 -17.82 -0.10 1.85 16 16 N -0.87 -23.79 12.87 55.43 0.71 -23.08 16 17 Si 0.89 20.20 29.54 -169.99 -5.02 15.18 16 18 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 21 C -0.21 -4.25 9.95 -26.70 -0.27 -4.52 16 22 C -0.15 -3.23 9.38 -26.69 -0.25 -3.48 16 23 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.07 0.55 8.14 -51.92 -0.42 0.13 16 25 H 0.07 0.58 7.07 -51.93 -0.37 0.22 16 26 H 0.16 1.69 8.06 -52.49 -0.42 1.27 16 27 H 0.18 3.31 5.31 -52.49 -0.28 3.03 16 28 H 0.41 4.85 7.43 -40.82 -0.30 4.54 16 29 H 0.40 6.81 8.23 -40.82 -0.34 6.48 16 30 H 0.07 1.83 8.14 -51.93 -0.42 1.41 16 31 H 0.04 0.82 8.11 -51.93 -0.42 0.39 16 32 H 0.26 6.88 8.32 -40.82 -0.34 6.54 16 33 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 35 H 0.08 2.01 8.14 -51.93 -0.42 1.59 16 36 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 LS Contribution 320.41 15.07 4.83 4.83 Total: -1.00 -28.84 320.41 -9.35 -38.19 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: -4.63 Total: 11.86 kcal Atomic # 6 Polarization: -6.43 SS G_CDS: -2.36 Total: -8.79 kcal Atomic # 7 Polarization: -47.37 SS G_CDS: 0.28 Total: -47.09 kcal Atomic # 8 Polarization: -12.68 SS G_CDS: 0.07 Total: -12.61 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Atomic # 16 Polarization: 0.94 SS G_CDS: -2.51 Total: -1.56 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -28.84 -9.35 -38.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603080941.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.904 kcal (2) G-P(sol) polarization free energy of solvation -28.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds