Wall clock time and date at job start Tue Mar 31 2020 01:13:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 S 1.75874 * 125.20145 * 2 1 4 4 C 1.75861 * 91.04392 * 180.02562 * 3 2 1 5 5 C 1.33384 * 109.69867 * 359.75388 * 4 3 2 6 6 C 1.33785 * 125.19998 * 180.02562 * 2 1 3 7 7 N 1.40810 * 122.61236 * 359.95491 * 6 2 1 8 8 C 1.34782 * 119.99992 * 187.86554 * 7 6 2 9 9 O 1.21613 * 119.99609 * 5.63888 * 8 7 6 10 10 N 1.34775 * 120.00344 * 185.63674 * 8 7 6 11 11 C 1.46499 * 119.99807 * 179.72719 * 10 8 7 12 12 C 1.53000 * 109.46765 * 179.74761 * 11 10 8 13 13 C 1.50701 * 115.55276 * 59.81896 * 12 11 10 14 14 H 1.08000 * 119.99791 * 266.18641 * 13 12 11 15 15 C 1.37874 * 120.00003 * 86.18386 * 13 12 11 16 16 N 1.31514 * 120.00105 * 353.95806 * 15 13 12 17 17 Si 1.86796 * 120.00050 * 173.95720 * 15 13 12 18 18 H 1.48502 * 109.47068 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.47109 * 119.99770 * 17 15 13 20 20 H 1.48492 * 109.47378 * 239.99990 * 17 15 13 21 21 C 1.52998 * 117.49702 * 274.14686 * 12 11 10 22 22 C 1.53008 * 117.49534 * 205.49110 * 12 11 10 23 23 H 1.08995 * 109.47141 * 269.98193 * 1 2 3 24 24 H 1.09008 * 109.46656 * 29.97669 * 1 2 3 25 25 H 1.08996 * 109.47024 * 149.97877 * 1 2 3 26 26 H 1.07996 * 125.15033 * 180.02562 * 4 3 2 27 27 H 1.07999 * 122.55390 * 180.22123 * 5 4 3 28 28 H 0.96994 * 120.00331 * 7.86665 * 7 6 2 29 29 H 0.96993 * 119.99540 * 359.97438 * 10 8 7 30 30 H 1.09003 * 109.47404 * 299.74395 * 11 10 8 31 31 H 1.08999 * 109.47500 * 59.74894 * 11 10 8 32 32 H 0.97001 * 120.00200 * 185.06744 * 16 15 13 33 33 H 1.09002 * 117.50146 * 0.02562 * 21 12 11 34 34 H 1.09000 * 117.49811 * 145.02262 * 21 12 11 35 35 H 1.09001 * 117.49570 * 214.97905 * 22 12 11 36 36 H 1.08994 * 117.49783 * 359.97397 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5208 1.4371 0.0000 4 6 3.9761 0.4497 -0.0008 5 6 3.6430 -0.8419 0.0044 6 6 2.2782 -1.0932 -0.0005 7 7 1.7464 -2.3970 -0.0001 8 6 2.5627 -3.4577 0.1591 9 8 3.7414 -3.2864 0.4046 10 7 2.0727 -4.7081 0.0462 11 6 2.9612 -5.8609 0.2134 12 6 2.1585 -7.1523 0.0433 13 6 1.4802 -7.3250 -1.2912 14 1 0.4543 -7.0129 -1.4199 15 6 2.1692 -7.8815 -2.3479 16 7 3.4506 -8.1518 -2.2279 17 14 1.2826 -8.2514 -3.9499 18 1 -0.1438 -7.8564 -3.8288 19 1 1.9155 -7.4862 -5.0541 20 1 1.3713 -9.7048 -4.2406 21 6 1.4428 -7.7067 1.2767 22 6 2.6894 -8.4101 0.7341 23 1 -0.3633 -0.0003 1.0276 24 1 -0.3633 0.8903 -0.5135 25 1 -0.3633 -0.8898 -0.5141 26 1 4.9864 0.8313 -0.0007 27 1 4.3794 -1.6319 0.0085 28 1 0.7927 -2.5319 -0.1145 29 1 1.1325 -4.8447 -0.1492 30 1 3.7511 -5.8226 -0.5368 31 1 3.4042 -5.8369 1.2090 32 1 3.9520 -8.4743 -2.9932 33 1 1.5434 -7.1513 2.2091 34 1 0.4814 -8.1968 1.1228 35 1 2.5476 -9.3626 0.2234 36 1 3.6106 -8.3176 1.3093 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603080941.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:13:49 Heat of formation + Delta-G solvation = 13.361106 kcal Electronic energy + Delta-G solvation = -19294.105805 eV Core-core repulsion = 16291.249231 eV Total energy + Delta-G solvation = -3002.856574 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.60621 -39.19832 -38.20610 -35.32341 -34.43539 -33.93975 -32.59077 -28.36153 -27.42764 -26.54527 -23.78105 -23.01101 -22.49410 -21.34964 -20.16481 -19.41997 -18.11512 -17.74705 -17.07856 -16.71060 -16.53463 -16.23381 -15.72776 -15.07211 -14.84798 -14.72498 -14.45437 -14.06232 -13.81115 -13.49095 -13.40437 -13.12036 -12.92616 -12.84739 -12.58602 -12.33077 -12.02927 -11.85495 -11.52514 -11.44333 -10.97519 -10.84810 -10.45961 -10.12603 -9.86419 -9.40920 -8.66300 -8.09579 -6.22668 0.04963 0.71289 0.97688 1.41047 1.45268 1.53743 1.58638 1.83926 2.35723 2.42538 3.18510 3.24317 3.57051 3.94686 4.21951 4.26060 4.40746 4.56115 4.66170 4.72390 4.77243 4.80957 4.88134 4.99158 5.02490 5.11222 5.20557 5.26321 5.29491 5.56016 5.62717 5.69935 5.74870 5.78773 6.08711 6.36953 6.84720 7.08209 7.47052 7.53693 8.98078 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.022585 B = 0.004071 C = 0.003870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.490709 B = 6876.552248 C = 7234.179667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.244 4.244 3 S 0.141 5.859 4 C -0.205 4.205 5 C -0.174 4.174 6 C 0.137 3.863 7 N -0.658 5.658 8 C 0.697 3.303 9 O -0.619 6.619 10 N -0.705 5.705 11 C 0.198 3.802 12 C 0.004 3.996 13 C -0.502 4.502 14 H 0.066 0.934 15 C 0.026 3.974 16 N -0.908 5.908 17 Si 0.948 3.052 18 H -0.260 1.260 19 H -0.290 1.290 20 H -0.286 1.286 21 C -0.176 4.176 22 C -0.157 4.157 23 H 0.083 0.917 24 H 0.085 0.915 25 H 0.077 0.923 26 H 0.185 0.815 27 H 0.149 0.851 28 H 0.420 0.580 29 H 0.409 0.591 30 H 0.029 0.971 31 H 0.038 0.962 32 H 0.258 0.742 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.063 0.937 36 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.980 16.407 4.563 18.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.365 4.365 3 S 0.402 5.598 4 C -0.340 4.340 5 C -0.205 4.205 6 C 0.030 3.970 7 N -0.307 5.307 8 C 0.397 3.603 9 O -0.500 6.500 10 N -0.358 5.358 11 C 0.073 3.927 12 C 0.003 3.997 13 C -0.539 4.539 14 H 0.084 0.916 15 C -0.175 4.175 16 N -0.545 5.545 17 Si 0.774 3.226 18 H -0.184 1.184 19 H -0.216 1.216 20 H -0.212 1.212 21 C -0.213 4.213 22 C -0.196 4.196 23 H 0.102 0.898 24 H 0.104 0.896 25 H 0.096 0.904 26 H 0.202 0.798 27 H 0.167 0.833 28 H 0.258 0.742 29 H 0.245 0.755 30 H 0.047 0.953 31 H 0.057 0.943 32 H 0.067 0.933 33 H 0.107 0.893 34 H 0.105 0.895 35 H 0.082 0.918 36 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -6.071 17.845 4.690 19.424 hybrid contribution -0.192 -2.359 -1.202 2.655 sum -6.263 15.486 3.488 17.065 Atomic orbital electron populations 1.20297 0.85530 1.03980 1.03535 1.24178 1.01450 0.94466 1.16431 1.83726 0.94985 1.06753 1.74290 1.25793 1.03641 0.95781 1.08805 1.20801 0.96281 0.98352 1.05107 1.16684 0.92405 0.83708 1.04201 1.42296 1.11021 1.02293 1.75091 1.16139 0.84703 0.81209 0.78277 1.90718 1.16836 1.84891 1.57585 1.44921 1.13792 1.03010 1.74086 1.20469 0.91189 0.83751 0.97283 1.19071 0.98594 0.90104 0.91939 1.20669 0.98333 1.40458 0.94470 0.91638 1.25683 0.95376 0.94840 1.01608 1.70107 1.08137 1.45328 1.30939 0.85667 0.79455 0.77467 0.79988 1.18374 1.21635 1.21194 1.23034 0.95963 1.04825 0.97502 1.22416 0.96227 0.97414 1.03521 0.89832 0.89640 0.90431 0.79770 0.83342 0.74166 0.75523 0.95279 0.94338 0.93283 0.89288 0.89513 0.91800 0.91083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.15 10.09 71.24 0.72 -0.43 16 2 C -0.24 -5.54 6.52 24.67 0.16 -5.38 16 3 S 0.14 2.83 23.32 -56.49 -1.32 1.52 16 4 C -0.20 -5.04 11.22 66.72 0.75 -4.29 16 5 C -0.17 -5.58 9.05 21.30 0.19 -5.38 16 6 C 0.14 4.03 6.53 36.81 0.24 4.27 16 7 N -0.66 -19.49 5.43 -320.22 -1.74 -21.23 16 8 C 0.70 26.59 8.50 179.05 1.52 28.11 16 9 O -0.62 -28.11 13.17 -4.07 -0.05 -28.16 16 10 N -0.71 -26.77 5.43 -478.50 -2.60 -29.37 16 11 C 0.20 8.90 5.52 86.38 0.48 9.38 16 12 C 0.00 0.17 1.46 -52.93 -0.08 0.09 16 13 C -0.50 -24.86 8.40 25.60 0.21 -24.65 16 14 H 0.07 3.11 7.82 -2.91 -0.02 3.09 16 15 C 0.03 1.34 5.38 84.65 0.46 1.80 16 16 N -0.91 -50.83 12.87 21.45 0.28 -50.55 16 17 Si 0.95 41.60 29.54 68.60 2.03 43.63 16 18 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 19 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 20 H -0.29 -12.58 7.11 99.48 0.71 -11.87 16 21 C -0.18 -6.79 9.95 30.62 0.30 -6.49 16 22 C -0.16 -7.04 9.38 30.62 0.29 -6.75 16 23 H 0.08 1.10 8.14 -2.39 -0.02 1.09 16 24 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 25 H 0.08 1.06 7.07 -2.39 -0.02 1.05 16 26 H 0.19 3.56 8.06 -2.91 -0.02 3.54 16 27 H 0.15 5.80 5.31 -2.94 -0.02 5.78 16 28 H 0.42 9.39 7.43 -92.71 -0.69 8.70 16 29 H 0.41 13.62 8.23 -92.71 -0.76 12.85 16 30 H 0.03 1.54 8.14 -2.39 -0.02 1.53 16 31 H 0.04 1.70 8.11 -2.39 -0.02 1.68 16 32 H 0.26 14.00 8.32 -92.71 -0.77 13.22 16 33 H 0.09 3.04 8.14 -2.39 -0.02 3.02 16 34 H 0.09 3.21 8.14 -2.39 -0.02 3.20 16 35 H 0.06 3.09 8.14 -2.39 -0.02 3.07 16 36 H 0.07 3.04 8.14 -2.39 -0.02 3.02 16 Total: -1.00 -63.66 320.41 1.50 -62.15 By element: Atomic # 1 Polarization: 32.08 SS G_CDS: -0.34 Total: 31.75 kcal Atomic # 6 Polarization: -14.97 SS G_CDS: 5.24 Total: -9.73 kcal Atomic # 7 Polarization: -97.09 SS G_CDS: -4.06 Total: -101.15 kcal Atomic # 8 Polarization: -28.11 SS G_CDS: -0.05 Total: -28.16 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 2.03 Total: 43.63 kcal Atomic # 16 Polarization: 2.83 SS G_CDS: -1.32 Total: 1.52 kcal Total: -63.66 1.50 -62.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603080941.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.512 kcal (2) G-P(sol) polarization free energy of solvation -63.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.151 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds