Wall clock time and date at job start Tue Mar 31 2020 01:35:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29021 * 124.92008 * 2 1 4 4 C 1.31782 * 117.12347 * 180.02562 * 3 2 1 5 5 C 1.50703 * 122.74597 * 179.97438 * 4 3 2 6 6 C 1.50701 * 109.47223 * 305.01785 * 5 4 3 7 7 O 1.21283 * 119.99851 * 0.02562 * 6 5 4 8 8 N 1.34779 * 119.99942 * 180.02562 * 6 5 4 9 9 C 1.46493 * 119.99888 * 180.02562 * 8 6 5 10 10 C 1.53001 * 109.47036 * 184.79176 * 9 8 6 11 11 C 1.50692 * 115.55016 * 294.81752 * 10 9 8 12 12 H 1.08002 * 120.00113 * 99.48121 * 11 10 9 13 13 C 1.37879 * 119.99926 * 279.20564 * 11 10 9 14 14 N 1.31509 * 120.00406 * 355.32457 * 13 11 10 15 15 Si 1.86806 * 119.99619 * 175.32899 * 13 11 10 16 16 H 1.48494 * 109.47315 * 90.00103 * 15 13 11 17 17 H 1.48502 * 109.46690 * 209.99893 * 15 13 11 18 18 H 1.48496 * 109.47116 * 329.99456 * 15 13 11 19 19 C 1.52997 * 117.51909 * 80.52228 * 10 9 8 20 20 C 1.52994 * 60.00384 * 107.47928 * 19 10 9 21 21 C 1.33638 * 114.50098 * 0.22893 * 4 3 2 22 22 S 1.70983 * 124.91253 * 179.97438 * 2 1 3 23 23 H 1.09002 * 109.47070 * 89.99785 * 1 2 3 24 24 H 1.08999 * 109.47643 * 210.00487 * 1 2 3 25 25 H 1.09000 * 109.46527 * 330.00167 * 1 2 3 26 26 H 1.09006 * 109.46644 * 185.02265 * 5 4 3 27 27 H 1.09003 * 109.47204 * 65.02451 * 5 4 3 28 28 H 0.97003 * 119.99757 * 359.97438 * 8 6 5 29 29 H 1.08999 * 109.47688 * 64.79293 * 9 8 6 30 30 H 1.09004 * 109.47203 * 304.79117 * 9 8 6 31 31 H 0.96998 * 120.00343 * 185.00416 * 14 13 11 32 32 H 1.08997 * 117.49957 * 214.97404 * 19 10 9 33 33 H 1.09008 * 117.49760 * 359.97438 * 19 10 9 34 34 H 1.09005 * 117.49918 * 252.51013 * 20 19 10 35 35 H 1.08997 * 117.52061 * 107.47923 * 20 19 10 36 36 H 1.08004 * 126.03593 * 179.77207 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2456 1.0579 0.0000 4 6 3.5512 0.8791 -0.0005 5 6 4.5308 2.0244 -0.0012 6 6 4.2373 2.9359 -1.1648 7 8 3.3224 2.6809 -1.9191 8 7 4.9915 4.0344 -1.3673 9 6 4.7058 4.9207 -2.4981 10 6 5.7719 6.0158 -2.5698 11 6 5.7973 6.9752 -1.4080 12 1 6.5189 6.8442 -0.6152 13 6 4.9030 8.0235 -1.3599 14 7 4.0898 8.2411 -2.3703 15 14 4.8467 9.1350 0.1405 16 1 5.7854 10.2699 -0.0487 17 1 3.4679 9.6573 0.3180 18 1 5.2417 8.3612 1.3448 19 6 7.1098 5.6585 -3.2203 20 6 6.1231 6.5705 -3.9518 21 6 3.9353 -0.4008 -0.0059 22 16 2.4856 -1.4021 0.0006 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3634 -0.8899 0.5139 25 1 -0.3632 0.8900 0.5138 26 1 5.5449 1.6349 -0.0915 27 1 4.4377 2.5827 0.9304 28 1 5.7230 4.2384 -0.7638 29 1 3.7250 5.3768 -2.3637 30 1 4.7146 4.3440 -3.4231 31 1 3.5119 9.0201 -2.3687 32 1 8.0084 6.1172 -2.8078 33 1 7.2309 4.6427 -3.5970 34 1 5.5949 6.1550 -4.8100 35 1 6.3720 7.6295 -4.0207 36 1 4.9545 -0.7583 -0.0107 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701299376.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:35:13 Heat of formation + Delta-G solvation = 24.144318 kcal Electronic energy + Delta-G solvation = -19076.664152 eV Core-core repulsion = 16074.275174 eV Total energy + Delta-G solvation = -3002.388978 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.09796 -38.57498 -36.61301 -33.20113 -33.02175 -31.97275 -29.76970 -27.93928 -26.09228 -25.03473 -22.84554 -21.18014 -19.97145 -19.59572 -19.28695 -17.66749 -16.55450 -16.07882 -15.43215 -14.87313 -14.75171 -14.71737 -14.46842 -13.80235 -13.61315 -13.21799 -13.00604 -12.75002 -12.41418 -12.20959 -12.16042 -11.60939 -11.59729 -11.27465 -10.99524 -10.91610 -10.52392 -10.24567 -9.59914 -9.52553 -9.37145 -9.22747 -9.02199 -8.66313 -8.50259 -8.23360 -8.03021 -6.06708 -4.16226 0.73204 1.36972 1.71226 2.84697 3.26295 3.29260 3.34774 3.35813 3.99544 4.08072 4.36148 4.83930 5.09502 5.19970 5.20960 5.25879 5.31378 5.37960 5.50362 5.54766 5.77850 5.80820 6.04510 6.18616 6.34427 6.49830 6.59122 6.70025 6.92362 7.11567 7.33651 7.42808 7.51672 7.82335 7.87454 8.34399 8.36239 8.84623 8.96773 9.50928 11.00882 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.023379 B = 0.003908 C = 0.003657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.352307 B = 7163.764287 C = 7655.656473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.054 3.946 3 N -0.442 5.442 4 C 0.100 3.900 5 C -0.071 4.071 6 C 0.508 3.492 7 O -0.540 6.540 8 N -0.706 5.706 9 C 0.165 3.835 10 C 0.027 3.973 11 C -0.501 4.501 12 H 0.060 0.940 13 C 0.074 3.926 14 N -0.874 5.874 15 Si 0.890 3.110 16 H -0.281 1.281 17 H -0.286 1.286 18 H -0.273 1.273 19 C -0.210 4.210 20 C -0.148 4.148 21 C -0.262 4.262 22 S 0.091 5.909 23 H 0.086 0.914 24 H 0.078 0.922 25 H 0.089 0.911 26 H 0.106 0.894 27 H 0.109 0.891 28 H 0.400 0.600 29 H 0.069 0.931 30 H 0.037 0.963 31 H 0.262 0.738 32 H 0.077 0.923 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.084 0.916 36 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.230 -17.066 5.929 18.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.226 4.226 3 N -0.156 5.156 4 C -0.032 4.032 5 C -0.114 4.114 6 C 0.292 3.708 7 O -0.418 6.418 8 N -0.355 5.355 9 C 0.042 3.958 10 C 0.027 3.973 11 C -0.538 4.538 12 H 0.078 0.922 13 C -0.130 4.130 14 N -0.510 5.510 15 Si 0.718 3.282 16 H -0.207 1.207 17 H -0.212 1.212 18 H -0.198 1.198 19 C -0.247 4.247 20 C -0.186 4.186 21 C -0.400 4.400 22 S 0.345 5.655 23 H 0.105 0.895 24 H 0.097 0.903 25 H 0.108 0.892 26 H 0.124 0.876 27 H 0.127 0.873 28 H 0.234 0.766 29 H 0.087 0.913 30 H 0.056 0.944 31 H 0.071 0.929 32 H 0.096 0.904 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.103 0.897 36 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -2.569 -17.709 5.334 18.673 hybrid contribution 0.995 1.580 0.925 2.084 sum -1.574 -16.129 6.259 17.373 Atomic orbital electron populations 1.20433 0.85332 1.03923 1.03983 1.27044 1.01759 0.90403 1.03349 1.66011 1.04424 1.31008 1.14185 1.19650 0.89998 0.93146 1.00446 1.20294 0.97489 0.93557 1.00037 1.20118 0.82712 0.81961 0.86037 1.90685 1.30206 1.73628 1.47263 1.45941 1.34114 1.24169 1.31304 1.20938 1.00147 0.88974 0.85705 1.19041 0.89882 0.94778 0.93638 1.20349 1.17185 1.10969 1.05337 0.92177 1.24986 0.94777 0.97328 0.95945 1.69979 1.23688 1.27254 1.30065 0.86628 0.77331 0.80813 0.83462 1.20713 1.21178 1.19770 1.22977 0.95401 0.98288 1.08055 1.22491 1.02263 0.98081 0.95771 1.26696 1.02937 0.95564 1.14841 1.83751 0.98368 1.13622 1.69732 0.89545 0.90347 0.89215 0.87601 0.87272 0.76606 0.91319 0.94445 0.92857 0.90411 0.91718 0.91821 0.89717 0.80647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.74 10.46 36.01 0.38 -0.37 16 2 C 0.05 0.72 7.39 -13.46 -0.10 0.62 16 3 N -0.44 -7.45 9.68 -8.05 -0.08 -7.52 16 4 C 0.10 1.51 5.64 -84.22 -0.47 1.04 16 5 C -0.07 -1.00 6.19 -29.03 -0.18 -1.18 16 6 C 0.51 9.74 7.80 -10.98 -0.09 9.66 16 7 O -0.54 -12.64 15.44 5.55 0.09 -12.55 16 8 N -0.71 -13.82 5.48 -60.30 -0.33 -14.15 16 9 C 0.17 3.83 5.50 -4.04 -0.02 3.81 16 10 C 0.03 0.65 1.40 -155.66 -0.22 0.43 16 11 C -0.50 -12.88 8.57 -34.44 -0.30 -13.17 16 12 H 0.06 1.51 7.82 -52.49 -0.41 1.10 16 13 C 0.07 1.97 5.44 -17.82 -0.10 1.87 16 14 N -0.87 -24.47 12.85 55.43 0.71 -23.76 16 15 Si 0.89 20.64 29.54 -169.99 -5.02 15.62 16 16 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 17 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 19 C -0.21 -4.37 9.95 -26.74 -0.27 -4.64 16 20 C -0.15 -3.41 9.39 -26.73 -0.25 -3.66 16 21 C -0.26 -3.18 11.07 29.12 0.32 -2.85 16 22 S 0.09 1.00 23.18 -107.50 -2.49 -1.50 16 23 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 24 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.11 1.11 8.03 -51.93 -0.42 0.69 16 27 H 0.11 1.39 8.14 -51.93 -0.42 0.97 16 28 H 0.40 7.00 8.33 -40.82 -0.34 6.66 16 29 H 0.07 1.84 8.14 -51.93 -0.42 1.42 16 30 H 0.04 0.87 8.09 -51.93 -0.42 0.45 16 31 H 0.26 7.05 8.32 -40.82 -0.34 6.71 16 32 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 33 H 0.06 1.24 8.14 -51.92 -0.42 0.81 16 34 H 0.06 1.41 8.14 -51.93 -0.42 0.98 16 35 H 0.08 2.08 8.14 -51.93 -0.42 1.65 16 36 H 0.18 1.58 8.06 -52.48 -0.42 1.16 16 LS Contribution 328.23 15.07 4.95 4.95 Total: -1.00 -32.43 328.23 -8.42 -40.84 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -4.95 Total: 6.52 kcal Atomic # 6 Polarization: -7.16 SS G_CDS: -1.29 Total: -8.45 kcal Atomic # 7 Polarization: -45.74 SS G_CDS: 0.30 Total: -45.43 kcal Atomic # 8 Polarization: -12.64 SS G_CDS: 0.09 Total: -12.55 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Atomic # 16 Polarization: 1.00 SS G_CDS: -2.49 Total: -1.50 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.43 -8.42 -40.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701299376.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.989 kcal (2) G-P(sol) polarization free energy of solvation -32.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds