Wall clock time and date at job start Tue Mar 31 2020 01:35:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29021 * 124.92008 * 2 1 4 4 C 1.31782 * 117.12347 * 180.02562 * 3 2 1 5 5 C 1.50703 * 122.74597 * 179.97438 * 4 3 2 6 6 C 1.50701 * 109.47223 * 305.01785 * 5 4 3 7 7 O 1.21283 * 119.99851 * 0.02562 * 6 5 4 8 8 N 1.34779 * 119.99942 * 180.02562 * 6 5 4 9 9 C 1.46493 * 119.99888 * 180.02562 * 8 6 5 10 10 C 1.53001 * 109.47036 * 184.79176 * 9 8 6 11 11 C 1.50692 * 115.55016 * 294.81752 * 10 9 8 12 12 H 1.08002 * 120.00113 * 99.48121 * 11 10 9 13 13 C 1.37879 * 119.99926 * 279.20564 * 11 10 9 14 14 N 1.31509 * 120.00406 * 355.32457 * 13 11 10 15 15 Si 1.86806 * 119.99619 * 175.32899 * 13 11 10 16 16 H 1.48494 * 109.47315 * 90.00103 * 15 13 11 17 17 H 1.48502 * 109.46690 * 209.99893 * 15 13 11 18 18 H 1.48496 * 109.47116 * 329.99456 * 15 13 11 19 19 C 1.52997 * 117.51909 * 80.52228 * 10 9 8 20 20 C 1.52994 * 60.00384 * 107.47928 * 19 10 9 21 21 C 1.33638 * 114.50098 * 0.22893 * 4 3 2 22 22 S 1.70983 * 124.91253 * 179.97438 * 2 1 3 23 23 H 1.09002 * 109.47070 * 89.99785 * 1 2 3 24 24 H 1.08999 * 109.47643 * 210.00487 * 1 2 3 25 25 H 1.09000 * 109.46527 * 330.00167 * 1 2 3 26 26 H 1.09006 * 109.46644 * 185.02265 * 5 4 3 27 27 H 1.09003 * 109.47204 * 65.02451 * 5 4 3 28 28 H 0.97003 * 119.99757 * 359.97438 * 8 6 5 29 29 H 1.08999 * 109.47688 * 64.79293 * 9 8 6 30 30 H 1.09004 * 109.47203 * 304.79117 * 9 8 6 31 31 H 0.96998 * 120.00343 * 185.00416 * 14 13 11 32 32 H 1.08997 * 117.49957 * 214.97404 * 19 10 9 33 33 H 1.09008 * 117.49760 * 359.97438 * 19 10 9 34 34 H 1.09005 * 117.49918 * 252.51013 * 20 19 10 35 35 H 1.08997 * 117.52061 * 107.47923 * 20 19 10 36 36 H 1.08004 * 126.03593 * 179.77207 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2456 1.0579 0.0000 4 6 3.5512 0.8791 -0.0005 5 6 4.5308 2.0244 -0.0012 6 6 4.2373 2.9359 -1.1648 7 8 3.3224 2.6809 -1.9191 8 7 4.9915 4.0344 -1.3673 9 6 4.7058 4.9207 -2.4981 10 6 5.7719 6.0158 -2.5698 11 6 5.7973 6.9752 -1.4080 12 1 6.5189 6.8442 -0.6152 13 6 4.9030 8.0235 -1.3599 14 7 4.0898 8.2411 -2.3703 15 14 4.8467 9.1350 0.1405 16 1 5.7854 10.2699 -0.0487 17 1 3.4679 9.6573 0.3180 18 1 5.2417 8.3612 1.3448 19 6 7.1098 5.6585 -3.2203 20 6 6.1231 6.5705 -3.9518 21 6 3.9353 -0.4008 -0.0059 22 16 2.4856 -1.4021 0.0006 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3634 -0.8899 0.5139 25 1 -0.3632 0.8900 0.5138 26 1 5.5449 1.6349 -0.0915 27 1 4.4377 2.5827 0.9304 28 1 5.7230 4.2384 -0.7638 29 1 3.7250 5.3768 -2.3637 30 1 4.7146 4.3440 -3.4231 31 1 3.5119 9.0201 -2.3687 32 1 8.0084 6.1172 -2.8078 33 1 7.2309 4.6427 -3.5970 34 1 5.5949 6.1550 -4.8100 35 1 6.3720 7.6295 -4.0207 36 1 4.9545 -0.7583 -0.0107 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701299376.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:35:13 Heat of formation + Delta-G solvation = 2.457213 kcal Electronic energy + Delta-G solvation = -19077.604576 eV Core-core repulsion = 16074.275174 eV Total energy + Delta-G solvation = -3003.329402 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.24046 -40.02595 -38.39815 -34.88088 -34.03925 -33.94145 -30.84318 -28.98095 -27.88286 -26.84326 -23.86309 -22.94844 -21.43676 -21.19860 -20.55344 -18.87477 -18.11566 -17.66701 -16.80999 -16.56608 -16.25964 -15.94692 -15.83540 -15.35438 -14.74214 -14.56965 -14.24190 -14.16249 -13.80249 -13.48152 -13.37456 -13.04252 -12.95920 -12.88242 -12.78464 -12.36444 -12.31518 -12.02878 -11.41740 -10.94932 -10.87945 -10.48715 -10.45003 -10.28009 -10.03934 -9.80786 -9.57516 -8.09412 -6.23300 -0.19687 0.49689 0.78193 1.42069 1.45265 1.53029 1.79432 1.80803 2.41906 2.55380 3.18668 3.19724 3.51410 3.85255 4.13872 4.20368 4.28057 4.39267 4.50348 4.54065 4.56242 4.64268 4.66402 4.73749 4.82455 4.99282 5.00664 5.07029 5.25458 5.27690 5.55854 5.61537 5.72242 5.79380 6.36900 6.80859 6.87071 6.94335 7.45975 7.47682 8.98138 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.023379 B = 0.003908 C = 0.003657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.352307 B = 7163.764287 C = 7655.656473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.027 3.973 3 N -0.497 5.497 4 C 0.061 3.939 5 C -0.060 4.060 6 C 0.504 3.496 7 O -0.587 6.587 8 N -0.701 5.701 9 C 0.183 3.817 10 C 0.005 3.995 11 C -0.503 4.503 12 H 0.067 0.933 13 C 0.023 3.977 14 N -0.910 5.910 15 Si 0.949 3.051 16 H -0.276 1.276 17 H -0.295 1.295 18 H -0.261 1.261 19 C -0.173 4.173 20 C -0.162 4.162 21 C -0.256 4.256 22 S 0.153 5.847 23 H 0.088 0.912 24 H 0.109 0.891 25 H 0.080 0.920 26 H 0.149 0.851 27 H 0.122 0.878 28 H 0.412 0.588 29 H 0.020 0.980 30 H 0.032 0.968 31 H 0.258 0.742 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.417 -19.222 7.419 20.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.251 4.251 3 N -0.213 5.213 4 C -0.070 4.070 5 C -0.102 4.102 6 C 0.291 3.709 7 O -0.468 6.468 8 N -0.351 5.351 9 C 0.058 3.942 10 C 0.004 3.996 11 C -0.541 4.541 12 H 0.085 0.915 13 C -0.178 4.178 14 N -0.548 5.548 15 Si 0.775 3.225 16 H -0.201 1.201 17 H -0.221 1.221 18 H -0.185 1.185 19 C -0.210 4.210 20 C -0.200 4.200 21 C -0.395 4.395 22 S 0.408 5.592 23 H 0.106 0.894 24 H 0.128 0.872 25 H 0.099 0.901 26 H 0.166 0.834 27 H 0.140 0.860 28 H 0.248 0.752 29 H 0.039 0.961 30 H 0.051 0.949 31 H 0.067 0.933 32 H 0.106 0.894 33 H 0.107 0.893 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -0.891 -19.882 6.857 21.051 hybrid contribution 0.468 2.139 0.432 2.232 sum -0.423 -17.743 7.289 19.187 Atomic orbital electron populations 1.20567 0.83722 1.05065 1.04398 1.27560 1.03225 0.91224 1.03133 1.66012 1.05791 1.33371 1.16106 1.19846 0.89837 0.94426 1.02935 1.20323 0.99631 0.92621 0.97580 1.21069 0.81377 0.81809 0.86689 1.90659 1.32104 1.74681 1.49330 1.45831 1.34707 1.23927 1.30632 1.20463 0.97690 0.89165 0.86891 1.19057 0.91980 0.95143 0.93376 1.20694 1.16618 1.10836 1.05907 0.91478 1.25729 0.94740 0.99075 0.98213 1.70115 1.24791 1.27817 1.32039 0.85685 0.76730 0.79268 0.80781 1.20137 1.22118 1.18523 1.22966 0.94079 0.98832 1.05076 1.22422 1.04102 0.97553 0.95922 1.27153 1.05078 0.94947 1.12307 1.83469 0.96593 1.11206 1.67975 0.89395 0.87205 0.90116 0.83368 0.86049 0.75185 0.96109 0.94944 0.93313 0.89354 0.89336 0.91544 0.91741 0.77415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.46 10.46 71.24 0.75 -0.71 16 2 C 0.03 0.69 7.39 88.52 0.65 1.34 16 3 N -0.50 -16.69 9.68 -179.40 -1.74 -18.43 16 4 C 0.06 1.77 5.64 41.52 0.23 2.00 16 5 C -0.06 -1.57 6.19 29.10 0.18 -1.39 16 6 C 0.50 19.18 7.80 87.66 0.68 19.86 16 7 O -0.59 -28.14 15.44 -3.04 -0.05 -28.18 16 8 N -0.70 -27.11 5.48 -463.06 -2.54 -29.65 16 9 C 0.18 8.62 5.50 86.38 0.48 9.10 16 10 C 0.01 0.24 1.40 -52.93 -0.07 0.17 16 11 C -0.50 -25.67 8.57 25.60 0.22 -25.45 16 12 H 0.07 3.26 7.82 -2.91 -0.02 3.24 16 13 C 0.02 1.23 5.44 84.66 0.46 1.69 16 14 N -0.91 -52.43 12.85 21.45 0.28 -52.15 16 15 Si 0.95 42.53 29.54 68.60 2.03 44.55 16 16 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 17 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 18 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 19 C -0.17 -6.84 9.95 30.59 0.30 -6.53 16 20 C -0.16 -7.49 9.39 30.59 0.29 -7.20 16 21 C -0.26 -5.47 11.07 66.78 0.74 -4.73 16 22 S 0.15 2.95 23.18 -56.49 -1.31 1.64 16 23 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 24 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 25 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 26 H 0.15 2.54 8.03 -2.38 -0.02 2.52 16 27 H 0.12 2.86 8.14 -2.39 -0.02 2.84 16 28 H 0.41 13.77 8.33 -92.71 -0.77 13.00 16 29 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.03 1.53 8.09 -2.39 -0.02 1.51 16 31 H 0.26 14.37 8.32 -92.71 -0.77 13.60 16 32 H 0.09 3.33 8.14 -2.39 -0.02 3.32 16 33 H 0.09 3.11 8.14 -2.38 -0.02 3.09 16 34 H 0.07 2.98 8.14 -2.38 -0.02 2.96 16 35 H 0.06 3.22 8.14 -2.39 -0.02 3.20 16 36 H 0.21 2.82 8.06 -2.91 -0.02 2.79 16 Total: -1.00 -72.83 328.23 1.90 -70.93 By element: Atomic # 1 Polarization: 22.83 SS G_CDS: 0.32 Total: 23.14 kcal Atomic # 6 Polarization: -16.76 SS G_CDS: 4.91 Total: -11.85 kcal Atomic # 7 Polarization: -96.23 SS G_CDS: -4.00 Total: -100.23 kcal Atomic # 8 Polarization: -28.14 SS G_CDS: -0.05 Total: -28.18 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.55 kcal Atomic # 16 Polarization: 2.95 SS G_CDS: -1.31 Total: 1.64 kcal Total: -72.83 1.90 -70.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701299376.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.384 kcal (2) G-P(sol) polarization free energy of solvation -72.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.927 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds