Wall clock time and date at job start Tue Mar 31 2020 01:16:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38913 * 120.74564 * 2 1 4 4 C 1.38025 * 119.34169 * 180.02562 * 3 2 1 5 5 C 1.50699 * 119.57107 * 179.97438 * 4 3 2 6 6 N 1.31966 * 120.86229 * 359.73021 * 4 3 2 7 7 C 1.32468 * 121.61082 * 0.55475 * 6 4 3 8 8 S 1.76203 * 119.70913 * 179.71391 * 7 6 4 9 9 C 1.81404 * 102.99889 * 359.72967 * 8 7 6 10 10 C 1.50697 * 109.46666 * 179.97438 * 9 8 7 11 11 O 1.21283 * 120.00521 * 359.72981 * 10 9 8 12 12 N 1.34784 * 119.99774 * 180.02562 * 10 9 8 13 13 C 1.46499 * 119.99893 * 179.72962 * 12 10 9 14 14 C 1.50699 * 109.46700 * 180.02562 * 13 12 10 15 15 H 1.08002 * 120.00629 * 359.97438 * 14 13 12 16 16 C 1.37878 * 119.99714 * 180.02562 * 14 13 12 17 17 N 1.31513 * 120.00098 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99896 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47258 * 59.99641 * 18 16 14 20 20 H 1.48510 * 109.47258 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47373 * 299.99470 * 18 16 14 22 22 C 1.38270 * 120.74260 * 180.02562 * 2 1 3 23 23 H 1.09000 * 109.47452 * 269.97826 * 1 2 3 24 24 H 1.09001 * 109.46977 * 29.97821 * 1 2 3 25 25 H 1.09000 * 109.46966 * 149.97678 * 1 2 3 26 26 H 1.08002 * 120.32559 * 359.97438 * 3 2 1 27 27 H 1.08993 * 109.47119 * 90.00146 * 5 4 3 28 28 H 1.09002 * 109.47294 * 210.00542 * 5 4 3 29 29 H 1.09003 * 109.46981 * 330.00558 * 5 4 3 30 30 H 1.09001 * 109.46813 * 60.00536 * 9 8 7 31 31 H 1.08993 * 109.47482 * 300.00119 * 9 8 7 32 32 H 0.97005 * 119.99846 * 359.72750 * 12 10 9 33 33 H 1.08998 * 109.47134 * 299.99552 * 13 12 10 34 34 H 1.08994 * 109.47397 * 59.99843 * 13 12 10 35 35 H 0.97003 * 119.99632 * 179.97438 * 17 16 14 36 36 H 1.08001 * 120.45280 * 359.96718 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2172 1.1939 0.0000 4 6 3.5970 1.1601 -0.0005 5 6 4.3726 2.4521 -0.0011 6 7 4.2460 0.0110 0.0043 7 6 3.6052 -1.1483 -0.0011 8 16 4.5223 -2.6529 -0.0019 9 6 6.2439 -2.0815 -0.0026 10 6 7.1682 -3.2717 -0.0027 11 8 6.7106 -4.3949 0.0026 12 7 8.5034 -3.0881 -0.0026 13 6 9.4020 -4.2451 0.0033 14 6 10.8322 -3.7704 0.0027 15 1 11.0502 -2.7126 -0.0021 16 6 11.8626 -4.6865 0.0072 17 7 11.5973 -5.9745 0.0124 18 14 13.6355 -4.0980 0.0057 19 1 13.8841 -3.2725 1.2148 20 1 14.5465 -5.2709 0.0118 21 1 13.8856 -3.2829 -1.2101 22 6 2.2138 -1.1884 -0.0005 23 1 -0.3634 -0.0004 1.0276 24 1 -0.3633 0.8902 -0.5135 25 1 -0.3633 -0.8898 -0.5142 26 1 1.6947 2.1391 -0.0004 27 1 4.5600 2.7639 1.0263 28 1 5.3224 2.3056 -0.5154 29 1 3.7963 3.2216 -0.5148 30 1 6.4273 -1.4796 0.8875 31 1 6.4265 -1.4791 -0.8924 32 1 8.8695 -2.1897 -0.0065 33 1 9.2184 -4.8431 0.8959 34 1 9.2196 -4.8513 -0.8840 35 1 12.3223 -6.6190 0.0152 36 1 1.6935 -2.1348 -0.0004 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000786742823.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:16:04 Heat of formation + Delta-G solvation = -21.855858 kcal Electronic energy + Delta-G solvation = -18153.657565 eV Core-core repulsion = 15149.273870 eV Total energy + Delta-G solvation = -3004.383696 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.33086 -38.78735 -34.40126 -34.26255 -32.86964 -32.39701 -29.99365 -28.22580 -27.67038 -26.79997 -23.72134 -22.57462 -21.34565 -19.88113 -17.69703 -17.01480 -16.56934 -16.21175 -15.77871 -15.25718 -15.17044 -14.82478 -14.44856 -14.04274 -13.63428 -13.46954 -13.10020 -13.01869 -12.88546 -12.71110 -12.52572 -12.41607 -11.98159 -11.73700 -11.62084 -11.00895 -10.88083 -10.41935 -10.31287 -9.88815 -9.70926 -9.52348 -9.43881 -9.25818 -8.76461 -7.97388 -7.50050 -6.18074 -4.25457 0.83958 1.03532 1.39522 2.27505 3.21398 3.24981 3.29691 3.31201 3.45393 4.01068 4.19595 4.34883 4.35757 4.74394 4.86445 4.96777 5.09967 5.17852 5.19295 5.26233 5.31779 5.35049 5.35339 5.43845 5.52932 5.57056 5.78021 5.83454 6.06853 6.44484 7.24630 7.33553 7.48000 7.61663 7.65877 7.93869 8.52007 8.71617 8.98132 9.40776 10.92066 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.034284 B = 0.002978 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.512343 B = 9399.616548 C =10185.071314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.024 4.024 3 C -0.189 4.189 4 C 0.146 3.854 5 C -0.104 4.104 6 N -0.497 5.497 7 C 0.117 3.883 8 S 0.008 5.992 9 C -0.134 4.134 10 C 0.513 3.487 11 O -0.542 6.542 12 N -0.704 5.704 13 C 0.250 3.750 14 C -0.545 4.545 15 H 0.063 0.937 16 C 0.064 3.936 17 N -0.885 5.885 18 Si 0.905 3.095 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.275 1.275 22 C -0.162 4.162 23 H 0.077 0.923 24 H 0.071 0.929 25 H 0.073 0.927 26 H 0.132 0.868 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.115 0.885 31 H 0.115 0.885 32 H 0.393 0.607 33 H 0.029 0.971 34 H 0.029 0.971 35 H 0.267 0.733 36 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.875 16.653 -0.014 25.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.033 4.033 3 C -0.213 4.213 4 C 0.005 3.995 5 C -0.161 4.161 6 N -0.212 5.212 7 C -0.132 4.132 8 S 0.250 5.750 9 C -0.286 4.286 10 C 0.296 3.704 11 O -0.421 6.421 12 N -0.352 5.352 13 C 0.130 3.870 14 C -0.584 4.584 15 H 0.081 0.919 16 C -0.140 4.140 17 N -0.522 5.522 18 Si 0.732 3.268 19 H -0.200 1.200 20 H -0.210 1.210 21 H -0.200 1.200 22 C -0.189 4.189 23 H 0.096 0.904 24 H 0.090 0.910 25 H 0.092 0.908 26 H 0.150 0.850 27 H 0.097 0.903 28 H 0.097 0.903 29 H 0.093 0.907 30 H 0.133 0.867 31 H 0.133 0.867 32 H 0.226 0.774 33 H 0.047 0.953 34 H 0.047 0.953 35 H 0.077 0.923 36 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -19.426 14.407 -0.005 24.186 hybrid contribution 0.774 2.057 0.012 2.198 sum -18.652 16.464 0.007 24.879 Atomic orbital electron populations 1.20827 0.90003 1.03396 1.02971 1.20201 0.96608 0.92525 0.93973 1.21709 0.94597 0.98549 1.06433 1.21261 0.91373 0.93731 0.93125 1.20722 1.00413 0.91816 1.03182 1.68011 1.39790 0.97222 1.16222 1.23648 0.94471 0.97446 0.97608 1.86263 0.98429 1.00292 1.90026 1.23688 0.94728 1.01959 1.08214 1.19599 0.83630 0.88961 0.78230 1.90705 1.76013 1.24575 1.50786 1.46381 1.04794 1.12171 1.71881 1.19169 0.86790 0.83093 0.97977 1.21174 0.90225 0.93404 1.53554 0.91865 1.24952 0.99686 0.94712 0.94631 1.69964 1.32976 1.00635 1.48644 0.86455 0.83421 0.78204 0.78712 1.20042 1.21038 1.20038 1.21465 0.92837 0.99168 1.05420 0.90394 0.90972 0.90839 0.84961 0.90300 0.90334 0.90692 0.86687 0.86710 0.77397 0.95290 0.95289 0.92327 0.84399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.69 10.06 36.01 0.36 -0.33 16 2 C -0.02 -0.22 5.91 -104.36 -0.62 -0.84 16 3 C -0.19 -1.76 9.44 -39.41 -0.37 -2.13 16 4 C 0.15 1.60 6.78 -82.61 -0.56 1.04 16 5 C -0.10 -0.81 10.17 36.01 0.37 -0.45 16 6 N -0.50 -6.73 9.34 -8.34 -0.08 -6.81 16 7 C 0.12 1.61 7.00 -16.92 -0.12 1.49 16 8 S 0.01 0.13 21.05 -107.50 -2.26 -2.14 16 9 C -0.13 -2.11 5.68 36.00 0.20 -1.90 16 10 C 0.51 10.48 7.85 -10.98 -0.09 10.39 16 11 O -0.54 -13.19 15.86 5.56 0.09 -13.11 16 12 N -0.70 -14.93 5.55 -61.48 -0.34 -15.27 16 13 C 0.25 6.65 5.43 -5.19 -0.03 6.62 16 14 C -0.55 -14.79 9.28 -34.44 -0.32 -15.11 16 15 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 16 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 17 N -0.89 -26.10 13.29 55.43 0.74 -25.37 16 18 Si 0.91 20.86 29.54 -169.99 -5.02 15.84 16 19 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 22 C -0.16 -1.86 9.54 -39.21 -0.37 -2.23 16 23 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 24 H 0.07 0.34 8.10 -51.93 -0.42 -0.08 16 25 H 0.07 0.40 8.10 -51.93 -0.42 -0.02 16 26 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 27 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 30 H 0.11 1.64 8.14 -51.92 -0.42 1.22 16 31 H 0.11 1.63 8.14 -51.93 -0.42 1.21 16 32 H 0.39 7.10 8.32 -40.82 -0.34 6.77 16 33 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 36 H 0.14 1.37 8.06 -52.49 -0.42 0.94 16 LS Contribution 330.15 15.07 4.98 4.98 Total: -1.00 -32.98 330.15 -8.48 -41.46 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -4.94 Total: 2.19 kcal Atomic # 6 Polarization: -0.13 SS G_CDS: -1.64 Total: -1.77 kcal Atomic # 7 Polarization: -47.76 SS G_CDS: 0.32 Total: -47.44 kcal Atomic # 8 Polarization: -13.19 SS G_CDS: 0.09 Total: -13.11 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Atomic # 16 Polarization: 0.13 SS G_CDS: -2.26 Total: -2.14 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -32.98 -8.48 -41.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000786742823.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.603 kcal (2) G-P(sol) polarization free energy of solvation -32.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds