Wall clock time and date at job start Tue Mar 31 2020 01:16:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38913 * 120.74564 * 2 1 4 4 C 1.38025 * 119.34169 * 180.02562 * 3 2 1 5 5 C 1.50699 * 119.57107 * 179.97438 * 4 3 2 6 6 N 1.31966 * 120.86229 * 359.73021 * 4 3 2 7 7 C 1.32468 * 121.61082 * 0.55475 * 6 4 3 8 8 S 1.76203 * 119.70913 * 179.71391 * 7 6 4 9 9 C 1.81404 * 102.99889 * 359.72967 * 8 7 6 10 10 C 1.50697 * 109.46666 * 179.97438 * 9 8 7 11 11 O 1.21283 * 120.00521 * 359.72981 * 10 9 8 12 12 N 1.34784 * 119.99774 * 180.02562 * 10 9 8 13 13 C 1.46499 * 119.99893 * 179.72962 * 12 10 9 14 14 C 1.50699 * 109.46700 * 180.02562 * 13 12 10 15 15 H 1.08002 * 120.00629 * 359.97438 * 14 13 12 16 16 C 1.37878 * 119.99714 * 180.02562 * 14 13 12 17 17 N 1.31513 * 120.00098 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99896 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47258 * 59.99641 * 18 16 14 20 20 H 1.48510 * 109.47258 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47373 * 299.99470 * 18 16 14 22 22 C 1.38270 * 120.74260 * 180.02562 * 2 1 3 23 23 H 1.09000 * 109.47452 * 269.97826 * 1 2 3 24 24 H 1.09001 * 109.46977 * 29.97821 * 1 2 3 25 25 H 1.09000 * 109.46966 * 149.97678 * 1 2 3 26 26 H 1.08002 * 120.32559 * 359.97438 * 3 2 1 27 27 H 1.08993 * 109.47119 * 90.00146 * 5 4 3 28 28 H 1.09002 * 109.47294 * 210.00542 * 5 4 3 29 29 H 1.09003 * 109.46981 * 330.00558 * 5 4 3 30 30 H 1.09001 * 109.46813 * 60.00536 * 9 8 7 31 31 H 1.08993 * 109.47482 * 300.00119 * 9 8 7 32 32 H 0.97005 * 119.99846 * 359.72750 * 12 10 9 33 33 H 1.08998 * 109.47134 * 299.99552 * 13 12 10 34 34 H 1.08994 * 109.47397 * 59.99843 * 13 12 10 35 35 H 0.97003 * 119.99632 * 179.97438 * 17 16 14 36 36 H 1.08001 * 120.45280 * 359.96718 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2172 1.1939 0.0000 4 6 3.5970 1.1601 -0.0005 5 6 4.3726 2.4521 -0.0011 6 7 4.2460 0.0110 0.0043 7 6 3.6052 -1.1483 -0.0011 8 16 4.5223 -2.6529 -0.0019 9 6 6.2439 -2.0815 -0.0026 10 6 7.1682 -3.2717 -0.0027 11 8 6.7106 -4.3949 0.0026 12 7 8.5034 -3.0881 -0.0026 13 6 9.4020 -4.2451 0.0033 14 6 10.8322 -3.7704 0.0027 15 1 11.0502 -2.7126 -0.0021 16 6 11.8626 -4.6865 0.0072 17 7 11.5973 -5.9745 0.0124 18 14 13.6355 -4.0980 0.0057 19 1 13.8841 -3.2725 1.2148 20 1 14.5465 -5.2709 0.0118 21 1 13.8856 -3.2829 -1.2101 22 6 2.2138 -1.1884 -0.0005 23 1 -0.3634 -0.0004 1.0276 24 1 -0.3633 0.8902 -0.5135 25 1 -0.3633 -0.8898 -0.5142 26 1 1.6947 2.1391 -0.0004 27 1 4.5600 2.7639 1.0263 28 1 5.3224 2.3056 -0.5154 29 1 3.7963 3.2216 -0.5148 30 1 6.4273 -1.4796 0.8875 31 1 6.4265 -1.4791 -0.8924 32 1 8.8695 -2.1897 -0.0065 33 1 9.2184 -4.8431 0.8959 34 1 9.2196 -4.8513 -0.8840 35 1 12.3223 -6.6190 0.0152 36 1 1.6935 -2.1348 -0.0004 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000786742823.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:16:03 Heat of formation + Delta-G solvation = -44.045796 kcal Electronic energy + Delta-G solvation = -18154.619793 eV Core-core repulsion = 15149.273870 eV Total energy + Delta-G solvation = -3005.345924 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.15065 -40.56518 -36.24062 -35.12190 -34.43834 -33.64091 -31.55849 -29.02604 -28.69471 -28.26972 -24.86905 -24.36566 -22.08953 -21.64699 -19.22935 -18.27982 -17.68583 -17.59690 -17.09251 -16.87346 -16.77098 -15.99797 -15.72620 -15.30152 -14.71038 -14.61849 -14.24458 -14.11069 -14.02847 -13.65644 -13.61096 -13.39721 -13.20826 -13.10382 -12.94583 -12.68821 -12.44958 -12.25052 -11.55446 -11.51705 -11.05701 -10.82170 -10.67342 -10.57282 -10.36323 -9.94631 -8.63047 -8.30604 -6.47623 -0.00394 0.23443 0.24609 1.13642 1.42810 1.46801 1.53753 1.55143 2.28257 2.48925 2.63303 3.04288 3.42206 3.71528 3.77199 3.99694 4.03299 4.14516 4.26205 4.27920 4.54275 4.64997 4.77897 4.78691 4.82633 5.01930 5.05851 5.12802 5.20080 5.26213 5.35800 5.40574 5.60505 5.72910 5.80684 6.60809 6.72697 6.80276 7.18109 7.33111 8.81412 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.034284 B = 0.002978 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.512343 B = 9399.616548 C =10185.071314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.024 4.024 3 C -0.180 4.180 4 C 0.128 3.872 5 C -0.101 4.101 6 N -0.521 5.521 7 C 0.100 3.900 8 S -0.039 6.039 9 C -0.111 4.111 10 C 0.513 3.487 11 O -0.584 6.584 12 N -0.697 5.697 13 C 0.267 3.733 14 C -0.558 4.558 15 H 0.085 0.915 16 C 0.004 3.996 17 N -0.930 5.930 18 Si 0.986 3.014 19 H -0.262 1.262 20 H -0.285 1.285 21 H -0.262 1.262 22 C -0.172 4.172 23 H 0.090 0.910 24 H 0.091 0.909 25 H 0.077 0.923 26 H 0.168 0.832 27 H 0.087 0.913 28 H 0.069 0.931 29 H 0.101 0.899 30 H 0.133 0.867 31 H 0.133 0.867 32 H 0.411 0.589 33 H -0.008 1.008 34 H -0.008 1.008 35 H 0.270 0.730 36 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.610 20.240 -0.022 28.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.033 4.033 3 C -0.203 4.203 4 C -0.013 4.013 5 C -0.158 4.158 6 N -0.236 5.236 7 C -0.148 4.148 8 S 0.202 5.798 9 C -0.262 4.262 10 C 0.298 3.702 11 O -0.466 6.466 12 N -0.347 5.347 13 C 0.144 3.856 14 C -0.596 4.596 15 H 0.103 0.897 16 C -0.195 4.195 17 N -0.569 5.569 18 Si 0.809 3.191 19 H -0.186 1.186 20 H -0.210 1.210 21 H -0.186 1.186 22 C -0.198 4.198 23 H 0.108 0.892 24 H 0.110 0.890 25 H 0.096 0.904 26 H 0.185 0.815 27 H 0.106 0.894 28 H 0.088 0.912 29 H 0.120 0.880 30 H 0.151 0.849 31 H 0.151 0.849 32 H 0.247 0.753 33 H 0.009 0.991 34 H 0.010 0.990 35 H 0.078 0.922 36 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -20.185 18.058 -0.014 27.083 hybrid contribution 0.823 1.027 0.017 1.316 sum -19.362 19.084 0.003 27.186 Atomic orbital electron populations 1.20913 0.87295 1.04656 1.04073 1.20649 0.98478 0.91735 0.92445 1.22153 0.94095 0.99965 1.04053 1.21867 0.92698 0.93832 0.92900 1.20804 1.00069 0.90956 1.03987 1.67921 1.40773 0.97846 1.17094 1.23383 0.94774 0.96535 1.00072 1.86338 0.98763 1.03302 1.91362 1.23403 0.93668 0.99333 1.09818 1.20326 0.83592 0.89857 0.76432 1.90684 1.76743 1.26912 1.52231 1.46083 1.04851 1.11635 1.72171 1.18623 0.88329 0.84164 0.94485 1.21573 0.90230 0.94572 1.53242 0.89719 1.26071 1.05067 0.94642 0.93769 1.70130 1.34702 1.02288 1.49737 0.85193 0.76679 0.77745 0.79520 1.18639 1.21048 1.18629 1.21686 0.92105 1.00612 1.05425 0.89183 0.89002 0.90371 0.81460 0.89423 0.91239 0.88037 0.84934 0.84926 0.75262 0.99051 0.99047 0.92167 0.83748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.97 10.06 71.24 0.72 -0.25 16 2 C -0.02 -0.39 5.91 -19.69 -0.12 -0.50 16 3 C -0.18 -2.73 9.44 22.38 0.21 -2.52 16 4 C 0.13 2.50 6.78 42.49 0.29 2.79 16 5 C -0.10 -1.30 10.17 71.24 0.72 -0.57 16 6 N -0.52 -13.53 9.34 -180.30 -1.68 -15.21 16 7 C 0.10 2.72 7.00 84.83 0.59 3.32 16 8 S -0.04 -1.24 21.05 -56.49 -1.19 -2.43 16 9 C -0.11 -3.50 5.68 71.24 0.40 -3.10 16 10 C 0.51 21.59 7.85 87.65 0.69 22.28 16 11 O -0.58 -29.94 15.86 -3.04 -0.05 -29.99 16 12 N -0.70 -30.24 5.55 -466.79 -2.59 -32.83 16 13 C 0.27 14.81 5.43 85.63 0.46 15.28 16 14 C -0.56 -30.55 9.28 25.60 0.24 -30.31 16 15 H 0.08 4.17 7.60 -2.91 -0.02 4.14 16 16 C 0.00 0.24 5.46 84.66 0.46 0.70 16 17 N -0.93 -56.42 13.29 21.45 0.28 -56.14 16 18 Si 0.99 42.45 29.54 68.60 2.03 44.48 16 19 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 20 H -0.29 -12.18 7.11 99.48 0.71 -11.47 16 21 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 22 C -0.17 -3.77 9.54 22.51 0.21 -3.55 16 23 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 24 H 0.09 0.47 8.10 -2.39 -0.02 0.45 16 25 H 0.08 0.63 8.10 -2.39 -0.02 0.61 16 26 H 0.17 1.32 8.06 -2.91 -0.02 1.29 16 27 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.10 0.74 8.08 -2.39 -0.02 0.73 16 30 H 0.13 3.70 8.14 -2.39 -0.02 3.69 16 31 H 0.13 3.70 8.14 -2.39 -0.02 3.68 16 32 H 0.41 14.67 8.32 -92.70 -0.77 13.90 16 33 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 34 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 35 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 36 H 0.14 2.82 8.06 -2.91 -0.02 2.80 16 Total: -1.00 -74.73 330.15 2.00 -72.73 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: 0.32 Total: 15.86 kcal Atomic # 6 Polarization: -1.35 SS G_CDS: 4.89 Total: 3.54 kcal Atomic # 7 Polarization: -100.20 SS G_CDS: -3.99 Total: -104.19 kcal Atomic # 8 Polarization: -29.94 SS G_CDS: -0.05 Total: -29.99 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.48 kcal Atomic # 16 Polarization: -1.24 SS G_CDS: -1.19 Total: -2.43 kcal Total: -74.73 2.00 -72.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000786742823.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.681 kcal (2) G-P(sol) polarization free energy of solvation -74.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds