Wall clock time and date at job start Tue Mar 31 2020 01:20:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.33826 * 122.44913 * 2 1 4 4 S 1.70618 * 110.95950 * 179.76913 * 3 2 1 5 5 C 1.75834 * 91.56629 * 0.32833 * 4 3 2 6 6 C 1.46535 * 125.45783 * 179.97438 * 5 4 3 7 7 O 1.21731 * 119.99544 * 179.68887 * 6 5 4 8 8 N 1.34774 * 120.00033 * 359.69540 * 6 5 4 9 9 N 1.40104 * 119.99615 * 180.02562 * 8 6 5 10 10 C 1.28014 * 119.99535 * 179.97438 * 9 8 6 11 11 C 1.50701 * 119.99868 * 180.02562 * 10 9 8 12 12 H 1.08998 * 109.47390 * 359.97438 * 11 10 9 13 13 C 1.53004 * 109.47545 * 119.99697 * 11 10 9 14 14 C 1.53005 * 109.47000 * 239.99888 * 11 10 9 15 15 C 1.50697 * 109.47115 * 175.00072 * 14 11 10 16 16 H 1.07995 * 120.00020 * 359.97438 * 15 14 11 17 17 C 1.37874 * 119.99706 * 179.97438 * 15 14 11 18 18 N 1.31517 * 119.99954 * 179.97438 * 17 15 14 19 19 Si 1.86802 * 120.00317 * 359.97438 * 17 15 14 20 20 H 1.48503 * 109.47301 * 89.99888 * 19 17 15 21 21 H 1.48504 * 109.47028 * 210.00017 * 19 17 15 22 22 H 1.48501 * 109.46945 * 329.99766 * 19 17 15 23 23 C 1.36678 * 109.07942 * 359.67572 * 5 4 3 24 24 H 1.08997 * 109.47209 * 269.97705 * 1 2 3 25 25 H 1.09005 * 109.47259 * 29.97887 * 1 2 3 26 26 H 1.09002 * 109.47189 * 149.97457 * 1 2 3 27 27 H 1.07993 * 124.51596 * 0.04420 * 3 2 1 28 28 H 0.96999 * 120.00054 * 359.97438 * 8 6 5 29 29 H 1.08000 * 120.00571 * 359.71666 * 10 9 8 30 30 H 1.08998 * 109.46756 * 59.99636 * 13 11 10 31 31 H 1.08996 * 109.47135 * 179.97438 * 13 11 10 32 32 H 1.08998 * 109.46853 * 299.99681 * 13 11 10 33 33 H 1.09006 * 109.46780 * 294.99797 * 14 11 10 34 34 H 1.08991 * 109.47300 * 54.99520 * 14 11 10 35 35 H 0.97001 * 119.99992 * 179.97438 * 18 17 15 36 36 H 1.08007 * 123.35643 * 180.26564 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2250 1.1293 0.0000 4 16 3.8970 0.7895 0.0064 5 6 3.5940 -0.9426 -0.0009 6 6 4.6233 -1.9856 -0.0004 7 8 4.3003 -3.1593 -0.0001 8 7 5.9274 -1.6454 -0.0001 9 7 6.9114 -2.6427 -0.0001 10 6 8.1501 -2.3196 -0.0003 11 6 9.2086 -3.3923 -0.0009 12 1 8.7323 -4.3727 -0.0006 13 6 10.0799 -3.2484 -1.2503 14 6 10.0805 -3.2491 1.2483 15 6 11.0597 -4.3928 1.3111 16 1 11.0599 -5.1467 0.5378 17 6 11.9554 -4.4768 2.3560 18 7 12.8097 -5.4752 2.4111 19 14 11.9556 -3.1724 3.6932 20 1 11.0297 -3.5785 4.7809 21 1 13.3281 -3.0251 4.2407 22 1 11.5091 -1.8769 3.1210 23 6 2.2446 -1.1601 -0.0005 24 1 -0.3633 -0.0004 1.0276 25 1 -0.3634 0.8902 -0.5135 26 1 -0.3634 -0.8898 -0.5142 27 1 1.8024 2.1231 0.0007 28 1 6.1847 -0.7102 -0.0005 29 1 8.4366 -1.2783 -0.0050 30 1 10.5561 -2.2680 -1.2501 31 1 10.8457 -4.0240 -1.2504 32 1 9.4588 -3.3505 -2.1401 33 1 10.6255 -2.3061 1.2047 34 1 9.4484 -3.2627 2.1361 35 1 13.4401 -5.5340 3.1460 36 1 1.8019 -2.1452 -0.0002 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000863155268.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:20:02 Heat of formation + Delta-G solvation = 22.728641 kcal Electronic energy + Delta-G solvation = -18176.627361 eV Core-core repulsion = 15174.176994 eV Total energy + Delta-G solvation = -3002.450367 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.80656 -38.38101 -37.02556 -34.89156 -32.53302 -31.69967 -30.54982 -28.19838 -27.58253 -25.25627 -23.75162 -21.62703 -20.88215 -19.49368 -19.27794 -18.42887 -17.37502 -16.62969 -16.14123 -15.38075 -15.29176 -14.28497 -14.21328 -14.00022 -13.63267 -13.52146 -13.36113 -12.84387 -12.57154 -12.47778 -12.34468 -12.23736 -11.81398 -11.33471 -11.24596 -11.06118 -10.81996 -10.31004 -10.15326 -10.01845 -9.85774 -9.67506 -9.24354 -9.16895 -8.82641 -8.65790 -8.54853 -6.05155 -4.03417 0.14920 1.08571 1.49326 1.91833 2.31237 2.47193 3.21011 3.30254 3.37788 3.38883 4.37510 4.43668 4.55900 4.76339 4.92132 5.01578 5.15742 5.17719 5.22963 5.28632 5.46397 5.55056 5.84075 5.91760 5.95268 6.01549 6.03370 6.35841 6.62589 6.76474 6.93840 7.05375 7.16011 7.30353 7.60559 7.74396 8.43219 8.51210 8.99533 9.56380 11.07877 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.030954 B = 0.002964 C = 0.002894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.339665 B = 9442.919255 C = 9672.215961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.116 4.116 3 C -0.232 4.232 4 S 0.196 5.804 5 C -0.258 4.258 6 C 0.607 3.393 7 O -0.495 6.495 8 N -0.589 5.589 9 N -0.249 5.249 10 C 0.105 3.895 11 C -0.032 4.032 12 H 0.087 0.913 13 C -0.129 4.129 14 C -0.003 4.003 15 C -0.516 4.516 16 H 0.078 0.922 17 C 0.068 3.932 18 N -0.901 5.901 19 Si 0.877 3.123 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.266 1.266 23 C -0.048 4.048 24 H 0.071 0.929 25 H 0.067 0.933 26 H 0.070 0.930 27 H 0.170 0.830 28 H 0.375 0.625 29 H 0.103 0.897 30 H 0.049 0.951 31 H 0.080 0.920 32 H 0.038 0.962 33 H 0.021 0.979 34 H 0.014 0.986 35 H 0.263 0.737 36 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.984 17.341 -6.173 27.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.130 4.130 3 C -0.370 4.370 4 S 0.464 5.536 5 C -0.379 4.379 6 C 0.393 3.607 7 O -0.368 6.368 8 N -0.330 5.330 9 N -0.050 5.050 10 C -0.110 4.110 11 C -0.053 4.053 12 H 0.105 0.895 13 C -0.188 4.188 14 C -0.042 4.042 15 C -0.554 4.554 16 H 0.096 0.904 17 C -0.133 4.133 18 N -0.540 5.540 19 Si 0.705 3.295 20 H -0.203 1.203 21 H -0.214 1.214 22 H -0.191 1.191 23 C -0.082 4.082 24 H 0.090 0.910 25 H 0.086 0.914 26 H 0.089 0.911 27 H 0.187 0.813 28 H 0.213 0.787 29 H 0.120 0.880 30 H 0.068 0.932 31 H 0.099 0.901 32 H 0.057 0.943 33 H 0.039 0.961 34 H 0.032 0.968 35 H 0.073 0.927 36 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -20.517 16.686 -6.061 27.131 hybrid contribution -0.669 1.276 0.888 1.693 sum -21.186 17.962 -5.173 28.253 Atomic orbital electron populations 1.20524 0.89150 1.03026 1.02602 1.18807 0.98103 0.91396 1.04651 1.25141 0.98285 1.03446 1.10127 1.83017 1.04388 0.98163 1.68025 1.24494 0.97803 0.96939 1.18706 1.16569 0.79859 0.87641 0.76665 1.90859 1.80856 1.17995 1.47123 1.46929 1.05057 1.06575 1.74398 1.74630 0.99896 1.15484 1.15031 1.26835 0.91518 1.00742 0.91911 1.20189 0.91547 0.95274 0.98312 0.89488 1.21688 0.99494 1.02775 0.94807 1.19615 0.94599 0.98261 0.91704 1.21036 1.15598 1.08784 1.09955 0.90439 1.24991 0.95205 0.95403 0.97747 1.69904 1.20897 1.30894 1.32301 0.86827 0.77225 0.82910 0.82576 1.20335 1.21398 1.19090 1.20703 0.90722 1.00253 0.96511 0.90983 0.91425 0.91097 0.81298 0.78704 0.87968 0.93161 0.90133 0.94280 0.96097 0.96756 0.92697 0.82582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.53 10.13 36.00 0.36 -0.17 16 2 C -0.12 -0.96 5.78 -106.45 -0.62 -1.58 16 3 C -0.23 -1.71 10.67 29.18 0.31 -1.40 16 4 S 0.20 1.63 22.15 -107.50 -2.38 -0.75 16 5 C -0.26 -3.07 6.45 -36.80 -0.24 -3.31 16 6 C 0.61 9.63 7.90 -12.92 -0.10 9.53 16 7 O -0.49 -9.84 17.18 5.16 0.09 -9.75 16 8 N -0.59 -8.91 6.25 30.23 0.19 -8.72 16 9 N -0.25 -4.51 10.93 32.67 0.36 -4.15 16 10 C 0.10 1.73 9.66 -13.87 -0.13 1.60 16 11 C -0.03 -0.61 2.75 -91.77 -0.25 -0.86 16 12 H 0.09 1.80 8.11 -51.93 -0.42 1.38 16 13 C -0.13 -2.20 8.99 37.16 0.33 -1.87 16 14 C 0.00 -0.07 3.50 -27.88 -0.10 -0.17 16 15 C -0.52 -14.05 8.96 -34.44 -0.31 -14.36 16 16 H 0.08 2.25 7.30 -52.49 -0.38 1.87 16 17 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 18 N -0.90 -27.28 13.96 55.43 0.77 -26.50 16 19 Si 0.88 21.25 27.47 -169.99 -4.67 16.58 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.27 -6.09 6.54 56.52 0.37 -5.72 16 23 C -0.05 -0.51 9.80 -40.42 -0.40 -0.91 16 24 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.07 0.30 8.12 -51.93 -0.42 -0.13 16 26 H 0.07 0.37 8.13 -51.93 -0.42 -0.05 16 27 H 0.17 0.81 8.06 -52.49 -0.42 0.38 16 28 H 0.38 4.35 7.74 -182.60 -1.41 2.94 16 29 H 0.10 1.36 8.00 -52.49 -0.42 0.94 16 30 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.08 1.52 6.95 -51.93 -0.36 1.16 16 32 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.02 0.46 7.20 -51.93 -0.37 0.08 16 34 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 35 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 36 H 0.16 1.61 8.06 -52.48 -0.42 1.19 16 LS Contribution 326.70 15.07 4.92 4.92 Total: -1.00 -33.47 326.70 -7.84 -41.31 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: -5.89 Total: -1.27 kcal Atomic # 6 Polarization: -10.44 SS G_CDS: -1.23 Total: -11.67 kcal Atomic # 7 Polarization: -40.69 SS G_CDS: 1.32 Total: -39.37 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: 0.09 Total: -9.75 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.67 Total: 16.58 kcal Atomic # 16 Polarization: 1.63 SS G_CDS: -2.38 Total: -0.75 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -33.47 -7.84 -41.31 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000863155268.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.038 kcal (2) G-P(sol) polarization free energy of solvation -33.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds