Wall clock time and date at job start Tue Mar 31 2020 01:20:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.33826 * 122.44913 * 2 1 4 4 S 1.70618 * 110.95950 * 179.76913 * 3 2 1 5 5 C 1.75834 * 91.56629 * 0.32833 * 4 3 2 6 6 C 1.46535 * 125.45783 * 179.97438 * 5 4 3 7 7 O 1.21731 * 119.99544 * 179.68887 * 6 5 4 8 8 N 1.34774 * 120.00033 * 359.69540 * 6 5 4 9 9 N 1.40104 * 119.99615 * 180.02562 * 8 6 5 10 10 C 1.28014 * 119.99535 * 179.97438 * 9 8 6 11 11 C 1.50701 * 119.99868 * 180.02562 * 10 9 8 12 12 H 1.08998 * 109.47390 * 359.97438 * 11 10 9 13 13 C 1.53004 * 109.47545 * 119.99697 * 11 10 9 14 14 C 1.53005 * 109.47000 * 239.99888 * 11 10 9 15 15 C 1.50697 * 109.47115 * 175.00072 * 14 11 10 16 16 H 1.07995 * 120.00020 * 359.97438 * 15 14 11 17 17 C 1.37874 * 119.99706 * 179.97438 * 15 14 11 18 18 N 1.31517 * 119.99954 * 179.97438 * 17 15 14 19 19 Si 1.86802 * 120.00317 * 359.97438 * 17 15 14 20 20 H 1.48503 * 109.47301 * 89.99888 * 19 17 15 21 21 H 1.48504 * 109.47028 * 210.00017 * 19 17 15 22 22 H 1.48501 * 109.46945 * 329.99766 * 19 17 15 23 23 C 1.36678 * 109.07942 * 359.67572 * 5 4 3 24 24 H 1.08997 * 109.47209 * 269.97705 * 1 2 3 25 25 H 1.09005 * 109.47259 * 29.97887 * 1 2 3 26 26 H 1.09002 * 109.47189 * 149.97457 * 1 2 3 27 27 H 1.07993 * 124.51596 * 0.04420 * 3 2 1 28 28 H 0.96999 * 120.00054 * 359.97438 * 8 6 5 29 29 H 1.08000 * 120.00571 * 359.71666 * 10 9 8 30 30 H 1.08998 * 109.46756 * 59.99636 * 13 11 10 31 31 H 1.08996 * 109.47135 * 179.97438 * 13 11 10 32 32 H 1.08998 * 109.46853 * 299.99681 * 13 11 10 33 33 H 1.09006 * 109.46780 * 294.99797 * 14 11 10 34 34 H 1.08991 * 109.47300 * 54.99520 * 14 11 10 35 35 H 0.97001 * 119.99992 * 179.97438 * 18 17 15 36 36 H 1.08007 * 123.35643 * 180.26564 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2250 1.1293 0.0000 4 16 3.8970 0.7895 0.0064 5 6 3.5940 -0.9426 -0.0009 6 6 4.6233 -1.9856 -0.0004 7 8 4.3003 -3.1593 -0.0001 8 7 5.9274 -1.6454 -0.0001 9 7 6.9114 -2.6427 -0.0001 10 6 8.1501 -2.3196 -0.0003 11 6 9.2086 -3.3923 -0.0009 12 1 8.7323 -4.3727 -0.0006 13 6 10.0799 -3.2484 -1.2503 14 6 10.0805 -3.2491 1.2483 15 6 11.0597 -4.3928 1.3111 16 1 11.0599 -5.1467 0.5378 17 6 11.9554 -4.4768 2.3560 18 7 12.8097 -5.4752 2.4111 19 14 11.9556 -3.1724 3.6932 20 1 11.0297 -3.5785 4.7809 21 1 13.3281 -3.0251 4.2407 22 1 11.5091 -1.8769 3.1210 23 6 2.2446 -1.1601 -0.0005 24 1 -0.3633 -0.0004 1.0276 25 1 -0.3634 0.8902 -0.5135 26 1 -0.3634 -0.8898 -0.5142 27 1 1.8024 2.1231 0.0007 28 1 6.1847 -0.7102 -0.0005 29 1 8.4366 -1.2783 -0.0050 30 1 10.5561 -2.2680 -1.2501 31 1 10.8457 -4.0240 -1.2504 32 1 9.4588 -3.3505 -2.1401 33 1 10.6255 -2.3061 1.2047 34 1 9.4484 -3.2627 2.1361 35 1 13.4401 -5.5340 3.1460 36 1 1.8019 -2.1452 -0.0002 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000863155268.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:20:01 Heat of formation + Delta-G solvation = 0.499244 kcal Electronic energy + Delta-G solvation = -18177.591300 eV Core-core repulsion = 15174.176994 eV Total energy + Delta-G solvation = -3003.414306 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.93988 -39.20828 -38.38086 -36.43985 -34.42109 -32.95544 -31.54288 -29.41718 -28.72694 -26.38645 -25.20177 -23.12721 -22.02870 -20.82526 -20.03884 -19.57332 -18.86576 -18.31498 -17.06073 -16.47883 -16.40161 -16.18584 -15.28637 -15.01992 -14.83585 -14.78793 -14.48921 -14.11200 -14.04457 -13.45038 -13.23766 -12.98059 -12.89675 -12.82722 -12.76178 -12.44371 -11.98260 -11.88585 -11.74450 -11.63156 -11.44432 -11.31569 -10.98214 -10.71540 -10.13809 -9.87162 -9.41099 -8.22879 -6.26019 -0.64214 0.36831 0.83209 0.85279 1.32198 1.38708 1.40426 1.41036 1.52067 2.09478 2.40525 3.12675 3.43081 3.75911 3.94245 4.01943 4.11505 4.33937 4.38315 4.47045 4.59756 4.66597 4.78119 4.86619 4.94263 5.02426 5.06236 5.19806 5.34246 5.35144 5.43549 5.48611 5.59813 5.70340 5.94157 6.33807 6.39388 6.81417 7.26168 7.37156 8.93544 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.030954 B = 0.002964 C = 0.002894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.339665 B = 9442.919255 C = 9672.215961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.131 4.131 3 C -0.215 4.215 4 S 0.243 5.757 5 C -0.301 4.301 6 C 0.604 3.396 7 O -0.552 6.552 8 N -0.579 5.579 9 N -0.290 5.290 10 C 0.116 3.884 11 C -0.029 4.029 12 H 0.057 0.943 13 C -0.123 4.123 14 C 0.000 4.000 15 C -0.519 4.519 16 H 0.039 0.961 17 C 0.003 3.997 18 N -0.953 5.953 19 Si 0.945 3.055 20 H -0.278 1.278 21 H -0.286 1.286 22 H -0.235 1.235 23 C -0.048 4.048 24 H 0.078 0.922 25 H 0.085 0.915 26 H 0.069 0.931 27 H 0.204 0.796 28 H 0.395 0.605 29 H 0.146 0.854 30 H 0.073 0.927 31 H 0.051 0.949 32 H 0.058 0.942 33 H 0.042 0.958 34 H 0.010 0.990 35 H 0.264 0.736 36 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.567 21.850 -6.027 31.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.143 4.143 3 C -0.352 4.352 4 S 0.512 5.488 5 C -0.422 4.422 6 C 0.393 3.607 7 O -0.430 6.430 8 N -0.321 5.321 9 N -0.092 5.092 10 C -0.098 4.098 11 C -0.051 4.051 12 H 0.075 0.925 13 C -0.181 4.181 14 C -0.038 4.038 15 C -0.557 4.557 16 H 0.058 0.942 17 C -0.193 4.193 18 N -0.594 5.594 19 Si 0.769 3.231 20 H -0.203 1.203 21 H -0.212 1.212 22 H -0.158 1.158 23 C -0.083 4.083 24 H 0.097 0.903 25 H 0.104 0.896 26 H 0.088 0.912 27 H 0.221 0.779 28 H 0.235 0.765 29 H 0.162 0.838 30 H 0.092 0.908 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.060 0.940 34 H 0.029 0.971 35 H 0.073 0.927 36 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -22.094 21.245 -5.936 31.221 hybrid contribution -0.256 -0.122 0.770 0.820 sum -22.350 21.123 -5.166 31.184 Atomic orbital electron populations 1.20584 0.87300 1.03965 1.03328 1.18979 0.99446 0.90661 1.05214 1.25642 0.97811 1.04674 1.07113 1.82790 1.04833 0.94350 1.66783 1.24228 0.97095 0.98556 1.22363 1.17198 0.80424 0.87897 0.75203 1.90814 1.81694 1.20518 1.49933 1.46727 1.04376 1.07018 1.73963 1.74518 1.01077 1.17995 1.15562 1.26591 0.90362 1.01602 0.91288 1.19961 0.92153 0.95170 0.97790 0.92453 1.21605 0.98804 1.03051 0.94646 1.19529 0.94058 0.96971 0.93252 1.21369 1.16323 1.09326 1.08673 0.94233 1.25962 0.94872 0.97894 1.00622 1.70068 1.22285 1.33464 1.33564 0.85740 0.77246 0.81062 0.79074 1.20330 1.21209 1.15826 1.20892 0.90732 1.01021 0.95629 0.90325 0.89567 0.91169 0.77903 0.76457 0.83753 0.90762 0.93007 0.92274 0.94022 0.97119 0.92680 0.83627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.80 10.13 71.23 0.72 -0.08 16 2 C -0.13 -1.83 5.78 -21.05 -0.12 -1.96 16 3 C -0.21 -2.31 10.67 66.82 0.71 -1.60 16 4 S 0.24 3.29 22.15 -56.49 -1.25 2.04 16 5 C -0.30 -6.93 6.45 24.07 0.16 -6.77 16 6 C 0.60 19.31 7.90 86.41 0.68 20.00 16 7 O -0.55 -22.96 17.18 -4.45 -0.08 -23.04 16 8 N -0.58 -16.88 6.25 -176.47 -1.10 -17.99 16 9 N -0.29 -10.30 10.93 -50.46 -0.55 -10.85 16 10 C 0.12 3.59 9.66 88.67 0.86 4.45 16 11 C -0.03 -1.11 2.75 -11.54 -0.03 -1.14 16 12 H 0.06 2.47 8.11 -2.39 -0.02 2.45 16 13 C -0.12 -4.07 8.99 71.98 0.65 -3.42 16 14 C 0.00 0.02 3.50 29.85 0.10 0.12 16 15 C -0.52 -28.93 8.96 25.60 0.23 -28.70 16 16 H 0.04 2.43 7.30 -2.91 -0.02 2.41 16 17 C 0.00 0.16 5.47 84.65 0.46 0.63 16 18 N -0.95 -59.49 13.96 21.45 0.30 -59.19 16 19 Si 0.95 43.28 27.47 68.60 1.88 45.16 16 20 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 21 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 22 H -0.24 -9.53 6.54 99.48 0.65 -8.88 16 23 C -0.05 -0.98 9.80 21.72 0.21 -0.77 16 24 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 25 H 0.09 0.43 8.12 -2.38 -0.02 0.41 16 26 H 0.07 0.62 8.13 -2.39 -0.02 0.60 16 27 H 0.20 0.80 8.06 -2.91 -0.02 0.77 16 28 H 0.39 8.21 7.74 -213.32 -1.65 6.55 16 29 H 0.15 3.21 8.00 -2.91 -0.02 3.19 16 30 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.05 2.00 6.95 -2.39 -0.02 1.98 16 32 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.04 1.69 7.20 -2.38 -0.02 1.67 16 34 H 0.01 0.47 7.57 -2.39 -0.02 0.46 16 35 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 36 H 0.15 3.15 8.06 -2.91 -0.02 3.13 16 Total: -1.00 -76.72 326.70 3.22 -73.51 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -0.62 Total: 9.59 kcal Atomic # 6 Polarization: -23.87 SS G_CDS: 4.63 Total: -19.23 kcal Atomic # 7 Polarization: -86.67 SS G_CDS: -1.35 Total: -88.02 kcal Atomic # 8 Polarization: -22.96 SS G_CDS: -0.08 Total: -23.04 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 1.88 Total: 45.16 kcal Atomic # 16 Polarization: 3.29 SS G_CDS: -1.25 Total: 2.04 kcal Total: -76.72 3.22 -73.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000863155268.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.005 kcal (2) G-P(sol) polarization free energy of solvation -76.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds