Wall clock time and date at job start Tue Mar 31 2020 01:58:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08996 * 109.46945 * 304.99450 * 3 2 1 5 5 C 1.50703 * 109.47148 * 184.99915 * 3 2 1 6 6 H 1.07998 * 119.99948 * 239.99959 * 5 3 2 7 7 C 1.37883 * 119.99901 * 59.99690 * 5 3 2 8 8 N 1.31514 * 119.99866 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99806 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47093 * 60.00099 * 9 7 5 11 11 H 1.48503 * 109.47086 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47388 * 300.00253 * 9 7 5 13 13 N 1.46490 * 109.47115 * 64.99762 * 3 2 1 14 14 C 1.34777 * 120.00429 * 275.00047 * 13 3 2 15 15 O 1.21633 * 119.99446 * 359.97438 * 14 13 3 16 16 C 1.47259 * 120.00601 * 180.02562 * 14 13 3 17 17 N 1.33565 * 123.14203 * 359.70551 * 16 14 13 18 18 C 1.28644 * 115.76842 * 179.83157 * 17 16 14 19 19 S 1.70771 * 110.55815 * 0.42288 * 18 17 16 20 20 C 1.35208 * 123.14415 * 180.02562 * 16 14 13 21 21 C 1.50698 * 125.58740 * 359.95953 * 20 16 14 22 22 C 1.52995 * 117.50116 * 188.75111 * 21 20 16 23 23 C 1.53001 * 117.49818 * 120.08629 * 21 20 16 24 24 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 26 26 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 27 27 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 28 28 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 29 29 H 0.97000 * 119.99365 * 179.97438 * 8 7 5 30 30 H 0.97001 * 120.00176 * 95.00254 * 13 3 2 31 31 H 1.08006 * 124.72190 * 180.15277 * 18 17 16 32 32 H 1.09007 * 115.54616 * 334.41978 * 21 20 16 33 33 H 1.09000 * 117.49884 * 359.97438 * 22 21 20 34 34 H 1.09003 * 117.50282 * 145.02192 * 22 21 20 35 35 H 1.09000 * 117.49602 * 214.98332 * 23 21 20 36 36 H 1.08993 * 117.49894 * 0.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1733 9 14 6.0049 0.8813 -1.3817 10 1 6.5975 0.1474 -0.2348 11 1 6.3979 0.2166 -2.6503 12 1 6.4995 2.2815 -1.3821 13 7 1.6524 2.0975 1.2517 14 6 0.4351 2.6644 1.3669 15 8 -0.3415 2.6326 0.4313 16 6 0.0457 3.3233 2.6249 17 7 0.8460 3.3908 3.6921 18 6 0.3632 4.0029 4.7154 19 16 -1.2199 4.5555 4.3919 20 6 -1.1579 3.9111 2.8099 21 6 -2.2634 3.9860 1.7885 22 6 -3.4692 4.8689 2.1161 23 6 -3.6044 3.3445 2.1507 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 0.5139 0.8900 27 1 1.8934 -0.5137 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 3.8293 -0.0604 -2.9502 30 1 2.2719 2.1232 1.9977 31 1 0.8848 4.1435 5.6507 32 1 -1.9456 3.9341 0.7471 33 1 -3.4630 5.3953 3.0705 34 1 -3.9450 5.3977 1.2902 35 1 -4.1691 2.8710 1.3475 36 1 -3.6871 2.8687 3.1279 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879483138.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:58:23 Heat of formation + Delta-G solvation = 25.867665 kcal Electronic energy + Delta-G solvation = -19749.433770 eV Core-core repulsion = 16747.119522 eV Total energy + Delta-G solvation = -3002.314249 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.25388 -38.14860 -37.22740 -34.99664 -32.31111 -30.97322 -30.21269 -27.25524 -25.65210 -23.20595 -22.54067 -22.20817 -21.82345 -19.70133 -19.15456 -18.03860 -16.97181 -16.09115 -15.36696 -15.25895 -14.95741 -14.60789 -14.17104 -14.11364 -13.78570 -13.10232 -12.65609 -12.15857 -12.00367 -11.86642 -11.67020 -11.46539 -11.20828 -11.05117 -10.96508 -10.78937 -10.60560 -10.27793 -10.13728 -9.76346 -9.59144 -9.29937 -9.06728 -8.99555 -8.72897 -8.45995 -7.75653 -6.08690 -4.17419 0.58839 1.22634 1.64445 2.29664 3.29179 3.33738 3.35844 3.77962 4.02484 4.07204 4.30997 4.44184 4.57345 4.80695 4.94397 5.19567 5.22663 5.37856 5.50086 5.61992 5.78142 5.98637 6.09666 6.32642 6.42503 6.49923 6.69635 7.08988 7.21262 7.39098 7.46298 7.51263 7.67753 7.80310 7.94698 8.21027 8.72964 8.80774 9.15011 9.49461 10.96752 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.025520 B = 0.004768 C = 0.004269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.913407 B = 5871.334204 C = 6557.807196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.270 3.730 4 H 0.051 0.949 5 C -0.533 4.533 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.883 5.883 9 Si 0.902 3.098 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.686 5.686 14 C 0.578 3.422 15 O -0.540 6.540 16 C 0.011 3.989 17 N -0.432 5.432 18 C -0.008 4.008 19 S 0.172 5.828 20 C -0.153 4.153 21 C -0.080 4.080 22 C -0.181 4.181 23 C -0.161 4.161 24 H 0.022 0.978 25 H 0.050 0.950 26 H 0.038 0.962 27 H 0.031 0.969 28 H 0.100 0.900 29 H 0.265 0.735 30 H 0.397 0.603 31 H 0.202 0.798 32 H 0.152 0.848 33 H 0.093 0.907 34 H 0.104 0.896 35 H 0.104 0.896 36 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.067 7.711 12.989 18.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.168 3.832 4 H 0.069 0.931 5 C -0.571 4.571 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.521 5.521 9 Si 0.729 3.271 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.333 5.333 14 C 0.360 3.640 15 O -0.419 6.419 16 C -0.123 4.123 17 N -0.146 5.146 18 C -0.308 4.308 19 S 0.428 5.572 20 C -0.277 4.277 21 C -0.101 4.101 22 C -0.219 4.219 23 C -0.198 4.198 24 H 0.041 0.959 25 H 0.069 0.931 26 H 0.057 0.943 27 H 0.050 0.950 28 H 0.118 0.882 29 H 0.075 0.925 30 H 0.231 0.769 31 H 0.218 0.782 32 H 0.169 0.831 33 H 0.111 0.889 34 H 0.122 0.878 35 H 0.122 0.878 36 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -11.675 7.854 12.738 18.980 hybrid contribution 1.751 -0.472 -0.314 1.841 sum -9.924 7.382 12.423 17.531 Atomic orbital electron populations 1.21837 0.98343 0.98032 1.01205 1.21935 0.92633 0.99706 1.02334 1.18851 0.94340 0.89238 0.80774 0.93142 1.21205 0.90667 1.38973 1.06296 0.92079 1.24870 0.98596 0.94785 0.95343 1.69887 1.35180 1.37686 1.09330 0.86508 0.84886 0.78311 0.77400 1.20151 1.21144 1.20197 1.46388 1.14062 1.54093 1.18712 1.16974 0.83299 0.79170 0.84597 1.90706 1.51739 1.60674 1.38815 1.20837 0.90914 1.04731 0.95843 1.66995 1.33305 1.15231 0.99056 1.28299 0.97297 1.02675 1.02535 1.82589 1.16276 1.52602 1.05770 1.24751 0.99611 1.03760 0.99560 1.20720 0.85294 1.04984 0.99073 1.23155 1.01823 0.93653 1.03225 1.23050 0.98474 0.95049 1.03276 0.95879 0.93083 0.94321 0.95013 0.88187 0.92548 0.76944 0.78160 0.83064 0.88911 0.87782 0.87753 0.88848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.12 8.51 37.16 0.32 -2.80 16 2 C -0.13 -3.18 5.45 -26.73 -0.15 -3.32 16 3 C 0.27 6.99 2.24 -69.08 -0.15 6.83 16 4 H 0.05 1.48 7.58 -51.93 -0.39 1.09 16 5 C -0.53 -14.48 8.73 -34.44 -0.30 -14.78 16 6 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 7 C 0.07 1.83 5.29 -17.82 -0.09 1.73 16 8 N -0.88 -24.96 11.29 55.43 0.63 -24.33 16 9 Si 0.90 20.99 29.54 -169.99 -5.02 15.97 16 10 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 11 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 12 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 13 N -0.69 -15.51 5.02 -56.06 -0.28 -15.79 16 14 C 0.58 12.39 6.36 -12.59 -0.08 12.31 16 15 O -0.54 -12.44 11.29 5.25 0.06 -12.38 16 16 C 0.01 0.20 6.70 -84.53 -0.57 -0.37 16 17 N -0.43 -6.95 10.12 -12.36 -0.13 -7.08 16 18 C -0.01 -0.10 12.17 51.43 0.63 0.53 16 19 S 0.17 1.81 21.77 -107.50 -2.34 -0.53 16 20 C -0.15 -2.29 6.04 -35.39 -0.21 -2.50 16 21 C -0.08 -1.13 5.40 -91.77 -0.50 -1.63 16 22 C -0.18 -1.87 10.03 -26.69 -0.27 -2.14 16 23 C -0.16 -1.83 10.24 -26.69 -0.27 -2.11 16 24 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.05 1.21 7.84 -51.93 -0.41 0.81 16 26 H 0.04 0.87 5.65 -51.93 -0.29 0.57 16 27 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.10 2.73 5.95 -51.93 -0.31 2.42 16 29 H 0.26 7.11 8.31 -40.82 -0.34 6.78 16 30 H 0.40 8.48 8.06 -40.82 -0.33 8.15 16 31 H 0.20 1.52 8.06 -52.48 -0.42 1.10 16 32 H 0.15 2.54 6.17 -51.93 -0.32 2.22 16 33 H 0.09 0.84 7.28 -51.93 -0.38 0.46 16 34 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 310.86 15.07 4.68 4.68 Total: -1.00 -30.30 310.86 -8.55 -38.85 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -4.51 Total: 8.86 kcal Atomic # 6 Polarization: -6.60 SS G_CDS: -1.65 Total: -8.25 kcal Atomic # 7 Polarization: -47.42 SS G_CDS: 0.22 Total: -47.20 kcal Atomic # 8 Polarization: -12.44 SS G_CDS: 0.06 Total: -12.38 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 16 Polarization: 1.81 SS G_CDS: -2.34 Total: -0.53 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -30.30 -8.55 -38.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879483138.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.721 kcal (2) G-P(sol) polarization free energy of solvation -30.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds