Wall clock time and date at job start Tue Mar 31 2020 01:58:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08996 * 109.46945 * 304.99450 * 3 2 1 5 5 C 1.50703 * 109.47148 * 184.99915 * 3 2 1 6 6 H 1.07998 * 119.99948 * 239.99959 * 5 3 2 7 7 C 1.37883 * 119.99901 * 59.99690 * 5 3 2 8 8 N 1.31514 * 119.99866 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99806 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47093 * 60.00099 * 9 7 5 11 11 H 1.48503 * 109.47086 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47388 * 300.00253 * 9 7 5 13 13 N 1.46490 * 109.47115 * 64.99762 * 3 2 1 14 14 C 1.34777 * 120.00429 * 275.00047 * 13 3 2 15 15 O 1.21633 * 119.99446 * 359.97438 * 14 13 3 16 16 C 1.47259 * 120.00601 * 180.02562 * 14 13 3 17 17 N 1.33565 * 123.14203 * 359.70551 * 16 14 13 18 18 C 1.28644 * 115.76842 * 179.83157 * 17 16 14 19 19 S 1.70771 * 110.55815 * 0.42288 * 18 17 16 20 20 C 1.35208 * 123.14415 * 180.02562 * 16 14 13 21 21 C 1.50698 * 125.58740 * 359.95953 * 20 16 14 22 22 C 1.52995 * 117.50116 * 188.75111 * 21 20 16 23 23 C 1.53001 * 117.49818 * 120.08629 * 21 20 16 24 24 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 26 26 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 27 27 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 28 28 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 29 29 H 0.97000 * 119.99365 * 179.97438 * 8 7 5 30 30 H 0.97001 * 120.00176 * 95.00254 * 13 3 2 31 31 H 1.08006 * 124.72190 * 180.15277 * 18 17 16 32 32 H 1.09007 * 115.54616 * 334.41978 * 21 20 16 33 33 H 1.09000 * 117.49884 * 359.97438 * 22 21 20 34 34 H 1.09003 * 117.50282 * 145.02192 * 22 21 20 35 35 H 1.09000 * 117.49602 * 214.98332 * 23 21 20 36 36 H 1.08993 * 117.49894 * 0.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1733 9 14 6.0049 0.8813 -1.3817 10 1 6.5975 0.1474 -0.2348 11 1 6.3979 0.2166 -2.6503 12 1 6.4995 2.2815 -1.3821 13 7 1.6524 2.0975 1.2517 14 6 0.4351 2.6644 1.3669 15 8 -0.3415 2.6326 0.4313 16 6 0.0457 3.3233 2.6249 17 7 0.8460 3.3908 3.6921 18 6 0.3632 4.0029 4.7154 19 16 -1.2199 4.5555 4.3919 20 6 -1.1579 3.9111 2.8099 21 6 -2.2634 3.9860 1.7885 22 6 -3.4692 4.8689 2.1161 23 6 -3.6044 3.3445 2.1507 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 0.5139 0.8900 27 1 1.8934 -0.5137 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 3.8293 -0.0604 -2.9502 30 1 2.2719 2.1232 1.9977 31 1 0.8848 4.1435 5.6507 32 1 -1.9456 3.9341 0.7471 33 1 -3.4630 5.3953 3.0705 34 1 -3.9450 5.3977 1.2902 35 1 -4.1691 2.8710 1.3475 36 1 -3.6871 2.8687 3.1279 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879483138.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:58:23 Heat of formation + Delta-G solvation = 5.868763 kcal Electronic energy + Delta-G solvation = -19750.300988 eV Core-core repulsion = 16747.119522 eV Total energy + Delta-G solvation = -3003.181466 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.55338 -39.68916 -38.19952 -36.89569 -34.29555 -32.85083 -31.38568 -29.16411 -26.95440 -25.05120 -23.72049 -23.29938 -22.96996 -21.54815 -20.78947 -19.21510 -18.56254 -17.54071 -17.08117 -16.72181 -16.51237 -16.01068 -15.61988 -15.16452 -15.05810 -14.75570 -14.61125 -13.80464 -13.47316 -13.23492 -13.11908 -12.97967 -12.89521 -12.67414 -12.50228 -12.20493 -12.08262 -12.04217 -11.66471 -11.55586 -11.10292 -10.82135 -10.61436 -10.52188 -10.21095 -9.89692 -9.55665 -8.17877 -6.35275 -0.46564 0.26366 0.64057 1.07708 1.42936 1.45255 1.53187 2.35060 2.45119 2.65191 2.93152 3.11031 3.25024 3.51141 3.81109 4.05282 4.15698 4.22895 4.46240 4.53947 4.60137 4.67873 4.71348 4.88427 4.95968 5.04683 5.16121 5.20951 5.22303 5.40767 5.53084 5.59986 5.76275 5.88631 6.13551 6.47273 6.70486 6.98121 7.29780 7.49613 8.87508 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.025520 B = 0.004768 C = 0.004269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.913407 B = 5871.334204 C = 6557.807196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.119 4.119 3 C 0.279 3.721 4 H 0.003 0.997 5 C -0.553 4.553 6 H 0.064 0.936 7 C 0.019 3.981 8 N -0.913 5.913 9 Si 0.971 3.029 10 H -0.266 1.266 11 H -0.281 1.281 12 H -0.273 1.273 13 N -0.692 5.692 14 C 0.572 3.428 15 O -0.567 6.567 16 C -0.029 4.029 17 N -0.469 5.469 18 C -0.009 4.009 19 S 0.282 5.718 20 C -0.166 4.166 21 C -0.119 4.119 22 C -0.150 4.150 23 C -0.155 4.155 24 H 0.047 0.953 25 H 0.031 0.969 26 H 0.038 0.962 27 H 0.035 0.965 28 H 0.076 0.924 29 H 0.266 0.734 30 H 0.402 0.598 31 H 0.243 0.757 32 H 0.112 0.888 33 H 0.115 0.885 34 H 0.117 0.883 35 H 0.105 0.895 36 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.721 8.899 15.906 21.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.158 4.158 3 C 0.176 3.824 4 H 0.021 0.979 5 C -0.591 4.591 6 H 0.083 0.917 7 C -0.181 4.181 8 N -0.551 5.551 9 Si 0.796 3.204 10 H -0.191 1.191 11 H -0.207 1.207 12 H -0.198 1.198 13 N -0.339 5.339 14 C 0.357 3.643 15 O -0.448 6.448 16 C -0.162 4.162 17 N -0.184 5.184 18 C -0.308 4.308 19 S 0.539 5.461 20 C -0.290 4.290 21 C -0.140 4.140 22 C -0.188 4.188 23 C -0.193 4.193 24 H 0.066 0.934 25 H 0.050 0.950 26 H 0.057 0.943 27 H 0.054 0.946 28 H 0.095 0.905 29 H 0.076 0.924 30 H 0.237 0.763 31 H 0.259 0.741 32 H 0.130 0.870 33 H 0.133 0.867 34 H 0.135 0.865 35 H 0.123 0.877 36 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -12.346 9.061 15.689 21.925 hybrid contribution 1.812 -0.736 -1.146 2.267 sum -10.534 8.325 14.543 19.793 Atomic orbital electron populations 1.21651 0.96766 0.99191 1.00201 1.21775 0.93953 0.98925 1.01179 1.18447 0.93797 0.89289 0.80912 0.97923 1.21505 0.91379 1.39360 1.06815 0.91750 1.25744 1.03439 0.94151 0.94803 1.70029 1.37142 1.38125 1.09761 0.85417 0.78922 0.78438 0.77673 1.19065 1.20669 1.19773 1.46184 1.15086 1.54934 1.17671 1.17544 0.82292 0.78449 0.86007 1.90683 1.52243 1.61495 1.40421 1.20299 0.92926 1.07677 0.95322 1.66939 1.34258 1.17529 0.99674 1.29041 0.98501 1.00618 1.02649 1.82131 1.13867 1.49427 1.00725 1.25084 0.98655 1.02726 1.02569 1.20587 0.86649 1.09357 0.97420 1.23289 0.97885 0.93074 1.04525 1.23159 0.96006 0.96335 1.03824 0.93439 0.95010 0.94341 0.94627 0.90544 0.92433 0.76336 0.74078 0.86979 0.86732 0.86491 0.87651 0.87634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.72 8.51 71.98 0.61 -5.10 16 2 C -0.12 -6.22 5.45 30.60 0.17 -6.06 16 3 C 0.28 15.28 2.24 44.25 0.10 15.37 16 4 H 0.00 0.18 7.58 -2.39 -0.02 0.17 16 5 C -0.55 -31.05 8.73 25.60 0.22 -30.83 16 6 H 0.06 3.48 7.74 -2.91 -0.02 3.46 16 7 C 0.02 1.06 5.29 84.66 0.45 1.50 16 8 N -0.91 -53.32 11.29 21.45 0.24 -53.08 16 9 Si 0.97 43.53 29.54 68.60 2.03 45.56 16 10 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 11 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 12 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 13 N -0.69 -32.93 5.02 -449.53 -2.26 -35.19 16 14 C 0.57 25.90 6.36 86.61 0.55 26.45 16 15 O -0.57 -28.07 11.29 -4.14 -0.05 -28.11 16 16 C -0.03 -1.03 6.70 40.55 0.27 -0.76 16 17 N -0.47 -14.70 10.12 -193.03 -1.95 -16.66 16 18 C -0.01 -0.19 12.17 130.71 1.59 1.41 16 19 S 0.28 4.84 21.77 -56.49 -1.23 3.61 16 20 C -0.17 -4.79 6.04 24.99 0.15 -4.64 16 21 C -0.12 -3.35 5.40 -11.54 -0.06 -3.41 16 22 C -0.15 -2.72 10.03 30.62 0.31 -2.41 16 23 C -0.16 -3.30 10.24 30.62 0.31 -2.98 16 24 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 25 H 0.03 1.58 7.84 -2.39 -0.02 1.56 16 26 H 0.04 1.79 5.65 -2.38 -0.01 1.78 16 27 H 0.03 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.08 4.36 5.95 -2.39 -0.01 4.35 16 29 H 0.27 14.70 8.31 -92.71 -0.77 13.93 16 30 H 0.40 17.95 8.06 -92.71 -0.75 17.21 16 31 H 0.24 2.53 8.06 -2.91 -0.02 2.51 16 32 H 0.11 4.04 6.17 -2.38 -0.01 4.03 16 33 H 0.11 1.56 7.28 -2.39 -0.02 1.54 16 34 H 0.12 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 36 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -70.59 310.86 1.82 -68.77 By element: Atomic # 1 Polarization: 26.19 SS G_CDS: 0.36 Total: 26.55 kcal Atomic # 6 Polarization: -16.13 SS G_CDS: 4.67 Total: -11.46 kcal Atomic # 7 Polarization: -100.96 SS G_CDS: -3.97 Total: -104.92 kcal Atomic # 8 Polarization: -28.07 SS G_CDS: -0.05 Total: -28.11 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Atomic # 16 Polarization: 4.84 SS G_CDS: -1.23 Total: 3.61 kcal Total: -70.59 1.82 -68.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879483138.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.641 kcal (2) G-P(sol) polarization free energy of solvation -70.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.772 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds