Wall clock time and date at job start Tue Mar 31 2020 01:57:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.81396 * 103.00069 * 2 1 4 4 C 1.52994 * 109.47407 * 59.99780 * 3 2 1 5 5 C 1.53002 * 109.47081 * 299.99948 * 3 2 1 6 6 C 1.50699 * 109.47172 * 180.02562 * 3 2 1 7 7 O 1.21270 * 119.99958 * 359.97438 * 6 3 2 8 8 N 1.34776 * 120.00012 * 179.97438 * 6 3 2 9 9 C 1.39269 * 119.99964 * 185.57631 * 8 6 3 10 10 C 1.39677 * 119.57439 * 18.84009 * 9 8 6 11 11 C 1.38648 * 119.49539 * 180.02562 * 10 9 8 12 12 C 1.38350 * 118.67018 * 359.74722 * 11 10 9 13 13 C 1.40580 * 119.12988 * 0.49956 * 12 11 10 14 14 C 1.41334 * 119.78852 * 179.76636 * 13 12 11 15 15 H 1.08006 * 120.00068 * 8.66345 * 14 13 12 16 16 C 1.40023 * 120.00186 * 188.65792 * 14 13 12 17 17 N 1.30745 * 120.00258 * 195.97429 * 16 14 13 18 18 Si 1.86807 * 119.99714 * 15.97708 * 16 14 13 19 19 H 1.48493 * 109.47324 * 269.99737 * 18 16 14 20 20 H 1.48498 * 109.47024 * 30.00182 * 18 16 14 21 21 H 1.48506 * 109.46658 * 149.99722 * 18 16 14 22 22 N 1.31903 * 119.57571 * 198.86332 * 9 8 6 23 23 H 1.09000 * 109.46981 * 59.99682 * 1 2 3 24 24 H 1.08997 * 109.47584 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46964 * 300.00719 * 1 2 3 26 26 H 1.09009 * 109.47344 * 179.97438 * 4 3 2 27 27 H 1.09003 * 109.47523 * 299.99931 * 4 3 2 28 28 H 1.08995 * 109.47452 * 60.00349 * 4 3 2 29 29 H 1.09002 * 109.46970 * 300.00223 * 5 3 2 30 30 H 1.08996 * 109.47532 * 59.99972 * 5 3 2 31 31 H 1.08998 * 109.47371 * 180.02562 * 5 3 2 32 32 H 0.96998 * 120.00306 * 5.58151 * 8 6 3 33 33 H 1.08001 * 120.25259 * 0.02562 * 10 9 8 34 34 H 1.08000 * 120.66569 * 180.02562 * 11 10 9 35 35 H 1.07999 * 120.43419 * 180.24614 * 12 11 10 36 36 H 0.96992 * 119.99715 * 354.93531 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 1.6341 2.4267 1.2491 5 6 1.6341 2.4266 -1.2493 6 6 3.7195 1.9373 -0.0006 7 8 4.4403 0.9621 -0.0006 8 7 4.2575 3.1730 -0.0013 9 6 5.6361 3.3322 -0.1191 10 6 6.4104 2.2848 -0.6233 11 6 7.7827 2.4448 -0.7394 12 6 8.3455 3.6484 -0.3539 13 6 7.5131 4.6626 0.1509 14 6 8.0740 5.8959 0.5535 15 1 9.1117 6.1108 0.3451 16 6 7.2843 6.8391 1.2224 17 7 7.6879 8.0789 1.3192 18 14 5.6541 6.3259 1.9765 19 1 4.5704 6.4958 0.9757 20 1 5.7268 4.9016 2.3905 21 1 5.3694 7.1724 3.1630 22 7 6.1937 4.4700 0.2474 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 1.8797 3.4888 1.2494 27 1 0.5510 2.3039 1.2492 28 1 2.0530 1.9572 2.1392 29 1 2.0530 1.9570 -2.1392 30 1 0.5510 2.3038 -1.2493 31 1 1.8796 3.4886 -1.2495 32 1 3.6847 3.9515 0.0804 33 1 5.9437 1.3572 -0.9205 34 1 8.3994 1.6475 -1.1272 35 1 9.4109 3.8053 -0.4359 36 1 8.5662 8.3298 0.9929 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882471392.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:57:21 Heat of formation + Delta-G solvation = -9.898975 kcal Electronic energy + Delta-G solvation = -19770.604306 eV Core-core repulsion = 16766.739100 eV Total energy + Delta-G solvation = -3003.865206 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.38815 -38.26256 -35.25255 -34.52403 -33.41669 -31.09707 -29.54377 -28.92919 -27.73245 -25.45688 -24.11979 -22.00183 -21.64227 -19.64203 -18.38501 -17.90015 -16.48773 -16.03860 -15.33277 -15.03363 -14.80328 -14.54063 -14.18398 -14.03452 -13.83393 -13.35325 -13.15658 -12.90749 -12.56843 -12.43570 -12.31945 -12.27900 -11.90747 -11.81846 -11.59754 -11.13949 -10.88413 -10.36322 -10.02200 -9.89084 -9.76825 -9.23732 -9.11476 -8.54279 -7.94660 -7.76910 -7.44874 -7.30187 -4.78211 1.34498 2.14143 2.36921 2.64852 2.96682 3.17922 3.43076 3.57416 3.86647 4.29764 4.42021 4.49908 4.59511 4.63518 4.88381 4.94302 5.21047 5.30282 5.35422 5.40464 5.50920 5.52095 5.78669 5.84612 5.87277 6.05118 6.43354 6.51167 6.53567 7.10321 7.16146 7.41567 7.53035 7.58581 7.74484 8.08396 8.23959 8.38382 8.63067 9.40533 9.95117 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.025295 B = 0.005393 C = 0.004649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.663043 B = 5190.530211 C = 6021.671502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 S -0.176 6.176 3 C -0.064 4.064 4 C -0.147 4.147 5 C -0.144 4.144 6 C 0.539 3.461 7 O -0.490 6.490 8 N -0.647 5.647 9 C 0.383 3.617 10 C -0.310 4.310 11 C -0.036 4.036 12 C -0.276 4.276 13 C 0.275 3.725 14 C -0.481 4.481 15 H 0.084 0.916 16 C 0.050 3.950 17 N -0.804 5.804 18 Si 1.141 2.859 19 H -0.288 1.288 20 H -0.280 1.280 21 H -0.326 1.326 22 N -0.594 5.594 23 H 0.076 0.924 24 H 0.102 0.898 25 H 0.077 0.923 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.406 0.594 33 H 0.138 0.862 34 H 0.106 0.894 35 H 0.105 0.895 36 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.727 -9.078 -2.268 17.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.312 4.312 2 S 0.050 5.950 3 C -0.177 4.177 4 C -0.206 4.206 5 C -0.203 4.203 6 C 0.323 3.677 7 O -0.363 6.363 8 N -0.293 5.293 9 C 0.152 3.848 10 C -0.334 4.334 11 C -0.060 4.060 12 C -0.298 4.298 13 C 0.151 3.849 14 C -0.513 4.513 15 H 0.102 0.898 16 C -0.172 4.172 17 N -0.425 5.425 18 Si 0.974 3.026 19 H -0.215 1.215 20 H -0.207 1.207 21 H -0.258 1.258 22 N -0.319 5.319 23 H 0.095 0.905 24 H 0.120 0.880 25 H 0.096 0.904 26 H 0.092 0.908 27 H 0.090 0.910 28 H 0.096 0.904 29 H 0.095 0.905 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.242 0.758 33 H 0.155 0.845 34 H 0.124 0.876 35 H 0.123 0.877 36 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -15.252 -9.375 -1.223 17.945 hybrid contribution 0.967 0.407 -1.192 1.588 sum -14.285 -8.968 -2.414 17.039 Atomic orbital electron populations 1.23612 0.96291 1.06434 1.04885 1.87410 1.04170 1.05593 1.97787 1.23007 0.95906 0.97860 1.00965 1.22169 1.01400 1.01360 0.95654 1.22139 1.01271 1.01349 0.95539 1.19507 0.88412 0.83081 0.76705 1.90668 1.60749 1.38562 1.46350 1.43110 1.06644 1.08439 1.71081 1.18041 0.82151 0.91579 0.93032 1.21510 0.94144 1.01595 1.16177 1.20918 0.94184 0.95882 0.95013 1.21626 0.99314 0.95389 1.13509 1.18174 0.85323 0.92618 0.88817 1.20666 0.99363 0.99034 1.32267 0.89775 1.27633 1.06066 0.91428 0.92102 1.70610 1.19935 1.17319 1.34666 0.82170 0.72222 0.74217 0.73964 1.21530 1.20677 1.25814 1.66166 1.13786 1.22965 1.29008 0.90468 0.87959 0.90446 0.90817 0.91029 0.90432 0.90527 0.91123 0.90817 0.75799 0.84458 0.87577 0.87653 0.90408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.10 9.87 101.05 1.00 -0.11 16 2 S -0.18 -2.22 20.43 -107.50 -2.20 -4.41 16 3 C -0.06 -0.79 0.80 -91.77 -0.07 -0.87 16 4 C -0.15 -1.51 8.21 37.15 0.31 -1.20 16 5 C -0.14 -1.43 8.22 37.16 0.31 -1.12 16 6 C 0.54 9.26 6.34 -10.99 -0.07 9.19 16 7 O -0.49 -10.06 12.66 5.57 0.07 -9.99 16 8 N -0.65 -12.00 5.19 -11.40 -0.06 -12.06 16 9 C 0.38 8.81 7.51 -154.98 -1.16 7.65 16 10 C -0.31 -7.08 8.83 -38.89 -0.34 -7.42 16 11 C -0.04 -0.79 10.15 -39.39 -0.40 -1.19 16 12 C -0.28 -6.63 9.83 -38.66 -0.38 -7.01 16 13 C 0.27 7.22 6.27 -85.00 -0.53 6.69 16 14 C -0.48 -13.05 9.51 -37.74 -0.36 -13.41 16 15 H 0.08 2.27 8.06 -52.48 -0.42 1.85 16 16 C 0.05 1.33 5.51 -17.35 -0.10 1.24 16 17 N -0.80 -21.61 13.65 55.55 0.76 -20.86 16 18 Si 1.14 27.26 25.93 -169.99 -4.41 22.85 16 19 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.28 -6.87 6.55 56.52 0.37 -6.50 16 21 H -0.33 -7.63 7.11 56.52 0.40 -7.23 16 22 N -0.59 -15.01 5.07 -10.25 -0.05 -15.06 16 23 H 0.08 0.51 6.99 -51.92 -0.36 0.14 16 24 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 25 H 0.08 0.52 6.99 -51.92 -0.36 0.15 16 26 H 0.07 0.71 7.45 -51.92 -0.39 0.32 16 27 H 0.07 0.55 6.68 -51.93 -0.35 0.20 16 28 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.07 0.53 6.68 -51.93 -0.35 0.18 16 31 H 0.07 0.69 7.70 -51.93 -0.40 0.29 16 32 H 0.41 6.55 7.69 -40.82 -0.31 6.24 16 33 H 0.14 3.10 5.33 -52.50 -0.28 2.82 16 34 H 0.11 2.02 8.06 -52.49 -0.42 1.59 16 35 H 0.11 2.35 8.06 -52.49 -0.42 1.93 16 36 H 0.28 7.33 8.72 -40.82 -0.36 6.98 16 LS Contribution 307.60 15.07 4.64 4.64 Total: -1.00 -30.93 307.60 -7.58 -38.51 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -4.52 Total: 3.95 kcal Atomic # 6 Polarization: -5.76 SS G_CDS: -1.81 Total: -7.57 kcal Atomic # 7 Polarization: -48.62 SS G_CDS: 0.65 Total: -47.98 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: 0.07 Total: -9.99 kcal Atomic # 14 Polarization: 27.26 SS G_CDS: -4.41 Total: 22.85 kcal Atomic # 16 Polarization: -2.22 SS G_CDS: -2.20 Total: -4.41 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -30.93 -7.58 -38.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882471392.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.613 kcal (2) G-P(sol) polarization free energy of solvation -30.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds