Wall clock time and date at job start Tue Mar 31 2020 01:57:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.81396 * 103.00069 * 2 1 4 4 C 1.52994 * 109.47407 * 59.99780 * 3 2 1 5 5 C 1.53002 * 109.47081 * 299.99948 * 3 2 1 6 6 C 1.50699 * 109.47172 * 180.02562 * 3 2 1 7 7 O 1.21270 * 119.99958 * 359.97438 * 6 3 2 8 8 N 1.34776 * 120.00012 * 179.97438 * 6 3 2 9 9 C 1.39269 * 119.99964 * 185.57631 * 8 6 3 10 10 C 1.39677 * 119.57439 * 18.84009 * 9 8 6 11 11 C 1.38648 * 119.49539 * 180.02562 * 10 9 8 12 12 C 1.38350 * 118.67018 * 359.74722 * 11 10 9 13 13 C 1.40580 * 119.12988 * 0.49956 * 12 11 10 14 14 C 1.41334 * 119.78852 * 179.76636 * 13 12 11 15 15 H 1.08006 * 120.00068 * 8.66345 * 14 13 12 16 16 C 1.40023 * 120.00186 * 188.65792 * 14 13 12 17 17 N 1.30745 * 120.00258 * 195.97429 * 16 14 13 18 18 Si 1.86807 * 119.99714 * 15.97708 * 16 14 13 19 19 H 1.48493 * 109.47324 * 269.99737 * 18 16 14 20 20 H 1.48498 * 109.47024 * 30.00182 * 18 16 14 21 21 H 1.48506 * 109.46658 * 149.99722 * 18 16 14 22 22 N 1.31903 * 119.57571 * 198.86332 * 9 8 6 23 23 H 1.09000 * 109.46981 * 59.99682 * 1 2 3 24 24 H 1.08997 * 109.47584 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46964 * 300.00719 * 1 2 3 26 26 H 1.09009 * 109.47344 * 179.97438 * 4 3 2 27 27 H 1.09003 * 109.47523 * 299.99931 * 4 3 2 28 28 H 1.08995 * 109.47452 * 60.00349 * 4 3 2 29 29 H 1.09002 * 109.46970 * 300.00223 * 5 3 2 30 30 H 1.08996 * 109.47532 * 59.99972 * 5 3 2 31 31 H 1.08998 * 109.47371 * 180.02562 * 5 3 2 32 32 H 0.96998 * 120.00306 * 5.58151 * 8 6 3 33 33 H 1.08001 * 120.25259 * 0.02562 * 10 9 8 34 34 H 1.08000 * 120.66569 * 180.02562 * 11 10 9 35 35 H 1.07999 * 120.43419 * 180.24614 * 12 11 10 36 36 H 0.96992 * 119.99715 * 354.93531 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 1.6341 2.4267 1.2491 5 6 1.6341 2.4266 -1.2493 6 6 3.7195 1.9373 -0.0006 7 8 4.4403 0.9621 -0.0006 8 7 4.2575 3.1730 -0.0013 9 6 5.6361 3.3322 -0.1191 10 6 6.4104 2.2848 -0.6233 11 6 7.7827 2.4448 -0.7394 12 6 8.3455 3.6484 -0.3539 13 6 7.5131 4.6626 0.1509 14 6 8.0740 5.8959 0.5535 15 1 9.1117 6.1108 0.3451 16 6 7.2843 6.8391 1.2224 17 7 7.6879 8.0789 1.3192 18 14 5.6541 6.3259 1.9765 19 1 4.5704 6.4958 0.9757 20 1 5.7268 4.9016 2.3905 21 1 5.3694 7.1724 3.1630 22 7 6.1937 4.4700 0.2474 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 1.8797 3.4888 1.2494 27 1 0.5510 2.3039 1.2492 28 1 2.0530 1.9572 2.1392 29 1 2.0530 1.9570 -2.1392 30 1 0.5510 2.3038 -1.2493 31 1 1.8796 3.4886 -1.2495 32 1 3.6847 3.9515 0.0804 33 1 5.9437 1.3572 -0.9205 34 1 8.3994 1.6475 -1.1272 35 1 9.4109 3.8053 -0.4359 36 1 8.5662 8.3298 0.9929 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882471392.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:57:20 Heat of formation + Delta-G solvation = -28.522707 kcal Electronic energy + Delta-G solvation = -19771.411892 eV Core-core repulsion = 16766.739100 eV Total energy + Delta-G solvation = -3004.672792 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.89252 -40.01282 -36.45443 -36.15151 -35.18311 -32.98253 -31.27602 -29.62369 -28.50030 -27.35605 -25.41388 -23.69925 -23.27151 -21.20257 -20.23664 -19.35202 -17.96249 -17.32823 -16.89834 -16.66447 -16.24546 -15.69442 -15.62414 -15.34296 -14.99685 -14.68047 -14.48327 -14.27908 -13.97451 -13.78062 -13.71206 -13.40607 -13.00797 -12.88351 -12.71819 -12.63355 -12.43536 -12.18992 -11.87750 -11.60657 -11.06436 -10.76227 -10.70928 -10.41896 -9.87312 -9.34236 -9.25790 -8.69359 -6.81548 0.40941 0.47934 0.73977 1.43407 1.49406 1.59130 1.69892 1.80653 1.98772 2.39152 2.61308 3.28201 3.54139 3.65879 3.68564 4.05547 4.35339 4.36744 4.41705 4.53530 4.55546 4.59379 4.64443 4.67473 4.67940 4.74743 4.89707 5.10726 5.11596 5.32604 5.36809 5.40247 5.70286 5.78011 5.91657 6.21715 6.38832 6.62901 6.91896 7.49175 7.91946 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.025295 B = 0.005393 C = 0.004649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.663043 B = 5190.530211 C = 6021.671502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 S -0.249 6.249 3 C -0.048 4.048 4 C -0.147 4.147 5 C -0.142 4.142 6 C 0.536 3.464 7 O -0.526 6.526 8 N -0.643 5.643 9 C 0.375 3.625 10 C -0.311 4.311 11 C -0.030 4.030 12 C -0.292 4.292 13 C 0.259 3.741 14 C -0.512 4.512 15 H 0.069 0.931 16 C 0.023 3.977 17 N -0.823 5.823 18 Si 1.171 2.829 19 H -0.268 1.268 20 H -0.293 1.293 21 H -0.319 1.319 22 N -0.605 5.605 23 H 0.094 0.906 24 H 0.114 0.886 25 H 0.093 0.907 26 H 0.081 0.919 27 H 0.105 0.895 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.103 0.897 31 H 0.081 0.919 32 H 0.418 0.582 33 H 0.144 0.856 34 H 0.142 0.858 35 H 0.115 0.885 36 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.762 -10.068 -2.627 20.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 S -0.023 6.023 3 C -0.161 4.161 4 C -0.206 4.206 5 C -0.201 4.201 6 C 0.322 3.678 7 O -0.401 6.401 8 N -0.290 5.290 9 C 0.143 3.857 10 C -0.335 4.335 11 C -0.054 4.054 12 C -0.314 4.314 13 C 0.134 3.866 14 C -0.544 4.544 15 H 0.088 0.912 16 C -0.195 4.195 17 N -0.446 5.446 18 Si 1.001 2.999 19 H -0.194 1.194 20 H -0.221 1.221 21 H -0.251 1.251 22 N -0.330 5.330 23 H 0.113 0.887 24 H 0.132 0.868 25 H 0.112 0.888 26 H 0.100 0.900 27 H 0.123 0.877 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.121 0.879 31 H 0.099 0.901 32 H 0.256 0.744 33 H 0.161 0.839 34 H 0.159 0.841 35 H 0.133 0.867 36 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -18.319 -10.355 -1.597 21.104 hybrid contribution 1.858 0.486 -1.142 2.235 sum -16.461 -9.870 -2.739 19.387 Atomic orbital electron populations 1.23677 0.91130 1.07792 1.06540 1.87677 1.09866 1.06732 1.98035 1.22923 0.91916 0.97884 1.03338 1.22239 1.03320 1.01290 0.93750 1.22191 1.03087 1.01258 0.93557 1.20476 0.90636 0.81804 0.74849 1.90634 1.62321 1.39524 1.47639 1.43153 1.04997 1.09760 1.71055 1.18378 0.84214 0.90920 0.92183 1.21823 0.94673 1.01733 1.15251 1.21304 0.94408 0.96041 0.93615 1.21790 0.99845 0.95722 1.14081 1.18367 0.86294 0.92898 0.89040 1.20672 0.99088 1.00317 1.34361 0.91233 1.28424 1.07816 0.91269 0.91988 1.70633 1.20203 1.17614 1.36160 0.81794 0.70919 0.73114 0.74104 1.19437 1.22093 1.25103 1.66174 1.13481 1.24000 1.29339 0.88681 0.86781 0.88782 0.90047 0.87670 0.91836 0.91646 0.87872 0.90055 0.74369 0.83898 0.84059 0.86671 0.90665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.40 9.87 113.37 1.12 -0.28 16 2 S -0.25 -5.78 20.43 -56.49 -1.15 -6.93 16 3 C -0.05 -1.06 0.80 -11.54 -0.01 -1.07 16 4 C -0.15 -2.53 8.21 71.98 0.59 -1.94 16 5 C -0.14 -2.33 8.22 71.98 0.59 -1.74 16 6 C 0.54 17.66 6.34 87.66 0.56 18.21 16 7 O -0.53 -21.28 12.66 -3.00 -0.04 -21.32 16 8 N -0.64 -22.87 5.19 -308.37 -1.60 -24.47 16 9 C 0.37 16.90 7.51 133.25 1.00 17.90 16 10 C -0.31 -13.85 8.83 22.72 0.20 -13.65 16 11 C -0.03 -1.27 10.15 22.39 0.23 -1.04 16 12 C -0.29 -13.97 9.83 22.87 0.22 -13.74 16 13 C 0.26 13.72 6.27 40.19 0.25 13.97 16 14 C -0.51 -28.48 9.51 23.46 0.22 -28.26 16 15 H 0.07 3.93 8.06 -2.91 -0.02 3.90 16 16 C 0.02 1.24 5.51 85.29 0.47 1.71 16 17 N -0.82 -45.05 13.65 21.84 0.30 -44.76 16 18 Si 1.17 54.83 25.93 68.60 1.78 56.61 16 19 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 20 H -0.29 -14.23 6.55 99.48 0.65 -13.58 16 21 H -0.32 -14.44 7.11 99.48 0.71 -13.73 16 22 N -0.60 -30.26 5.07 -186.35 -0.95 -31.20 16 23 H 0.09 0.78 6.99 -2.39 -0.02 0.76 16 24 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 25 H 0.09 0.79 6.99 -2.39 -0.02 0.78 16 26 H 0.08 1.29 7.45 -2.38 -0.02 1.27 16 27 H 0.10 1.11 6.68 -2.39 -0.02 1.09 16 28 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.10 1.04 6.68 -2.39 -0.02 1.02 16 31 H 0.08 1.23 7.70 -2.39 -0.02 1.21 16 32 H 0.42 12.60 7.69 -92.71 -0.71 11.89 16 33 H 0.14 6.29 5.33 -3.17 -0.02 6.28 16 34 H 0.14 5.00 8.06 -2.91 -0.02 4.98 16 35 H 0.12 5.15 8.06 -2.91 -0.02 5.13 16 36 H 0.28 15.00 8.72 -92.71 -0.81 14.20 16 Total: -1.00 -68.17 307.60 4.08 -64.08 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: 0.30 Total: 17.92 kcal Atomic # 6 Polarization: -15.38 SS G_CDS: 5.45 Total: -9.94 kcal Atomic # 7 Polarization: -98.18 SS G_CDS: -2.25 Total: -100.43 kcal Atomic # 8 Polarization: -21.28 SS G_CDS: -0.04 Total: -21.32 kcal Atomic # 14 Polarization: 54.83 SS G_CDS: 1.78 Total: 56.61 kcal Atomic # 16 Polarization: -5.78 SS G_CDS: -1.15 Total: -6.93 kcal Total: -68.17 4.08 -64.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882471392.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.561 kcal (2) G-P(sol) polarization free energy of solvation -68.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds