Wall clock time and date at job start Tue Mar 31 2020 01:59:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47164 * 2 1 4 4 H 1.09002 * 109.47212 * 54.26831 * 3 2 1 5 5 S 1.81404 * 109.47032 * 294.27121 * 3 2 1 6 6 C 1.81405 * 102.99955 * 173.38400 * 5 3 2 7 7 C 1.50697 * 109.47133 * 174.27091 * 3 2 1 8 8 O 1.21269 * 120.00279 * 34.99866 * 7 3 2 9 9 N 1.34786 * 119.99564 * 215.00197 * 7 3 2 10 10 C 1.39268 * 119.99567 * 174.97953 * 9 7 3 11 11 C 1.39674 * 119.57565 * 185.41936 * 10 9 7 12 12 C 1.38654 * 119.50013 * 179.97438 * 11 10 9 13 13 C 1.38344 * 118.66445 * 0.02562 * 12 11 10 14 14 C 1.40580 * 119.13332 * 359.97438 * 13 12 11 15 15 C 1.41339 * 119.78479 * 180.02562 * 14 13 12 16 16 H 1.07998 * 120.00043 * 0.02562 * 15 14 13 17 17 C 1.40031 * 119.99543 * 180.02562 * 15 14 13 18 18 N 1.30745 * 120.00075 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 119.99772 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.46958 * 90.00217 * 19 17 15 21 21 H 1.48496 * 109.47167 * 210.00000 * 19 17 15 22 22 H 1.48500 * 109.47005 * 330.00448 * 19 17 15 23 23 N 1.31902 * 119.57830 * 5.14450 * 10 9 7 24 24 H 1.08997 * 109.47049 * 305.11770 * 1 2 3 25 25 H 1.09004 * 109.46788 * 65.11607 * 1 2 3 26 26 H 1.09000 * 109.46884 * 185.11304 * 1 2 3 27 27 H 1.08996 * 109.47276 * 240.00030 * 2 1 3 28 28 H 1.09003 * 109.46949 * 119.99867 * 2 1 3 29 29 H 1.08999 * 109.46897 * 295.11931 * 6 5 3 30 30 H 1.08993 * 109.47023 * 175.11604 * 6 5 3 31 31 H 1.08998 * 109.47281 * 55.11732 * 6 5 3 32 32 H 0.97001 * 120.00135 * 354.97402 * 9 7 3 33 33 H 1.08006 * 120.24618 * 359.97438 * 11 10 9 34 34 H 1.07995 * 120.66653 * 180.02562 * 12 11 10 35 35 H 1.08007 * 120.43072 * 179.97438 * 13 12 11 36 36 H 0.97002 * 119.99422 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5953 1.9851 0.8342 5 16 1.5788 2.2469 -1.5591 6 6 2.0786 3.9702 -1.2926 7 6 3.5403 1.4448 0.1418 8 8 4.1993 0.5659 -0.3718 9 7 4.1496 2.4238 0.8397 10 6 5.5238 2.3703 1.0597 11 6 6.1286 3.3267 1.8785 12 6 7.4968 3.2716 2.0969 13 6 8.2253 2.2633 1.4915 14 6 7.5584 1.3305 0.6783 15 6 8.2891 0.2945 0.0536 16 1 9.3563 0.2210 0.2020 17 6 7.6293 -0.6367 -0.7578 18 7 6.3374 -0.5475 -0.9378 19 14 8.5950 -2.0065 -1.5829 20 1 8.6388 -3.1902 -0.6872 21 1 7.9353 -2.3769 -2.8607 22 1 9.9784 -1.5413 -1.8565 23 7 6.2366 1.4140 0.4965 24 1 -0.3633 0.5912 0.8406 25 1 -0.3633 0.4324 -0.9323 26 1 -0.3633 -1.0236 0.0916 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.4783 4.4030 -0.4923 30 1 1.9255 4.5389 -2.2098 31 1 3.1322 4.0043 -1.0156 32 1 3.6311 3.1657 1.1886 33 1 5.5351 4.1032 2.3380 34 1 7.9838 4.0011 2.7269 35 1 9.2926 2.1937 1.6418 36 1 5.8803 -1.1928 -1.4996 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882473686.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:59:16 Heat of formation + Delta-G solvation = 14.635322 kcal Electronic energy + Delta-G solvation = -19955.389153 eV Core-core repulsion = 16952.587833 eV Total energy + Delta-G solvation = -3002.801319 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.40324 -37.60883 -34.45759 -33.96221 -33.04163 -30.36077 -29.63544 -28.70764 -27.48884 -25.50428 -22.62443 -21.53946 -20.99465 -19.45883 -17.83590 -16.51741 -16.35748 -16.10665 -15.01336 -14.68979 -14.48792 -14.14785 -13.77496 -13.68063 -13.48867 -13.19201 -12.87921 -12.67208 -12.28288 -12.11639 -11.85729 -11.55179 -11.16857 -11.07024 -10.96324 -10.88006 -10.67105 -10.49105 -9.96296 -9.93838 -9.68195 -9.10236 -9.03507 -7.99482 -7.58085 -7.19931 -7.01049 -6.15565 -4.41753 1.59815 2.46015 2.81998 3.08810 3.17681 3.19798 3.25846 3.65682 3.90467 4.06030 4.77886 4.91163 4.93938 5.15157 5.18542 5.23699 5.44824 5.54518 5.76600 5.80290 6.01516 6.03686 6.09109 6.21186 6.40081 6.44673 6.62842 6.79304 6.82248 7.22011 7.51231 7.58639 7.78381 8.00813 8.16688 8.41559 8.71574 9.02465 9.18519 10.21412 10.46767 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.015857 B = 0.006613 C = 0.005196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1765.411411 B = 4232.899176 C = 5387.542664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.091 4.091 3 C -0.075 4.075 4 H 0.094 0.906 5 S -0.219 6.219 6 C -0.134 4.134 7 C 0.472 3.528 8 O -0.387 6.387 9 N -0.667 5.667 10 C 0.372 3.628 11 C -0.359 4.359 12 C -0.036 4.036 13 C -0.305 4.305 14 C 0.270 3.730 15 C -0.423 4.423 16 H 0.083 0.917 17 C 0.057 3.943 18 N -0.654 5.654 19 Si 0.896 3.104 20 H -0.271 1.271 21 H -0.277 1.277 22 H -0.263 1.263 23 N -0.473 5.473 24 H 0.052 0.948 25 H 0.064 0.936 26 H 0.056 0.944 27 H 0.084 0.916 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.100 0.900 31 H 0.082 0.918 32 H 0.395 0.605 33 H 0.090 0.910 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.852 4.222 1.031 11.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.130 4.130 3 C -0.208 4.208 4 H 0.112 0.888 5 S 0.006 5.994 6 C -0.303 4.303 7 C 0.251 3.749 8 O -0.249 6.249 9 N -0.315 5.315 10 C 0.133 3.867 11 C -0.385 4.385 12 C -0.060 4.060 13 C -0.328 4.328 14 C 0.145 3.855 15 C -0.454 4.454 16 H 0.101 0.899 17 C -0.172 4.172 18 N -0.273 5.273 19 Si 0.721 3.279 20 H -0.197 1.197 21 H -0.202 1.202 22 H -0.188 1.188 23 N -0.192 5.192 24 H 0.072 0.928 25 H 0.083 0.917 26 H 0.075 0.925 27 H 0.102 0.898 28 H 0.096 0.904 29 H 0.095 0.905 30 H 0.119 0.881 31 H 0.101 0.899 32 H 0.228 0.772 33 H 0.108 0.892 34 H 0.114 0.886 35 H 0.115 0.885 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -11.473 2.314 -0.951 11.743 hybrid contribution 1.098 1.237 1.560 2.273 sum -10.375 3.551 0.609 10.983 Atomic orbital electron populations 1.21831 0.94967 1.01646 1.02354 1.21167 0.95727 0.91706 1.04357 1.23532 0.97295 1.01871 0.98055 0.88798 1.86776 1.80700 1.07116 1.24775 1.23509 1.05068 0.95704 1.06009 1.20475 0.88440 0.84333 0.81694 1.91153 1.63119 1.32245 1.38384 1.43496 1.06959 1.25392 1.55606 1.18591 0.83469 0.92418 0.92226 1.20473 0.95756 1.06866 1.15357 1.20552 0.93128 0.96060 0.96253 1.21627 0.98968 1.02178 1.10005 1.18384 0.87307 0.90930 0.88848 1.19595 0.95147 1.07508 1.23120 0.89932 1.26178 0.95192 0.98839 0.96989 1.70301 1.07019 1.27804 1.22177 0.86512 0.80785 0.81520 0.79133 1.19652 1.20246 1.18755 1.68681 1.06343 1.20202 1.23943 0.92840 0.91726 0.92452 0.89770 0.90376 0.90537 0.88084 0.89904 0.77192 0.89220 0.88635 0.88550 0.91483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.66 37.16 0.36 -1.30 16 2 C -0.09 -1.29 4.96 -26.73 -0.13 -1.43 16 3 C -0.08 -1.12 2.60 -27.89 -0.07 -1.19 16 4 H 0.09 1.15 8.13 -51.92 -0.42 0.73 16 5 S -0.22 -3.15 20.71 -107.50 -2.23 -5.38 16 6 C -0.13 -1.58 10.60 101.05 1.07 -0.51 16 7 C 0.47 9.42 6.43 -10.98 -0.07 9.35 16 8 O -0.39 -9.63 12.16 5.57 0.07 -9.57 16 9 N -0.67 -12.98 4.93 -11.40 -0.06 -13.04 16 10 C 0.37 9.00 7.43 -154.98 -1.15 7.85 16 11 C -0.36 -8.01 9.95 -38.89 -0.39 -8.40 16 12 C -0.04 -0.81 10.15 -39.39 -0.40 -1.21 16 13 C -0.30 -7.67 9.83 -38.66 -0.38 -8.05 16 14 C 0.27 7.59 6.55 -85.00 -0.56 7.03 16 15 C -0.42 -11.65 9.14 -37.73 -0.34 -11.99 16 16 H 0.08 2.13 7.85 -52.49 -0.41 1.71 16 17 C 0.06 1.51 5.50 -17.34 -0.10 1.42 16 18 N -0.65 -18.13 9.00 55.55 0.50 -17.63 16 19 Si 0.90 19.33 29.56 -169.99 -5.02 14.31 16 20 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 21 H -0.28 -5.92 7.11 56.52 0.40 -5.51 16 22 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 23 N -0.47 -13.22 5.74 -10.25 -0.06 -13.28 16 24 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.06 0.72 7.35 -51.93 -0.38 0.34 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.08 1.36 8.04 -51.93 -0.42 0.95 16 28 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.08 0.72 8.14 -51.92 -0.42 0.29 16 30 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.08 1.13 7.48 -51.93 -0.39 0.74 16 32 H 0.39 5.98 8.69 -40.82 -0.35 5.63 16 33 H 0.09 1.71 8.06 -52.48 -0.42 1.29 16 34 H 0.10 1.84 8.06 -52.49 -0.42 1.41 16 35 H 0.10 2.25 8.06 -52.48 -0.42 1.83 16 36 H 0.27 7.13 8.29 -40.82 -0.34 6.79 16 LS Contribution 316.94 15.07 4.78 4.78 Total: -1.00 -31.92 316.94 -9.08 -40.99 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: -4.89 Total: 7.25 kcal Atomic # 6 Polarization: -6.27 SS G_CDS: -2.16 Total: -8.43 kcal Atomic # 7 Polarization: -44.33 SS G_CDS: 0.38 Total: -43.95 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: 0.07 Total: -9.57 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -5.02 Total: 14.31 kcal Atomic # 16 Polarization: -3.15 SS G_CDS: -2.23 Total: -5.38 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -31.92 -9.08 -40.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882473686.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.628 kcal (2) G-P(sol) polarization free energy of solvation -31.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds